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Getting 'Exon' information from database.
2GXB
Asym. Unit
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Asym.Unit (34 KB)
Biol.Unit 1 (30 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE ZA DOMAIN BOUND TO Z-RNA
Authors
:
A. Athanasiadis, D. Placido, A. Rich
Date
:
08 May 06 (Deposition) - 01 May 07 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.25
Chains
:
Asym. Unit : A,B,E,F
Biol. Unit 1: A,B,E,F (1x)
Keywords
:
Z-Rna, Za, Adar1, Rna Editing, Protein-Rna Complex, Hydrolase/Rna Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
D. Placido, B. A. Brown, K. Lowenhaupt, A. Rich, A. Athanasiadis
A Left-Handed Rna Double Helix Bound By The Zalpha Domain Of The Rna-Editing Enzyme Adar1.
Structure V. 15 395 2007
(for further references see the
PDB file header
)
[
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Hetero Components
(2, 4)
Info
All Hetero Components
1a: (DUa)
2a: SODIUM ION (NAa)
2b: SODIUM ION (NAb)
2c: SODIUM ION (NAc)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
DU
1
Mod. Residue
2
NA
3
Ligand/Ion
SODIUM ION
[
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]
Sites
(3, 3)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASN B:173 , TRP B:195 , HOH B:211 , C F:3
BINDING SITE FOR RESIDUE NA B 203
2
AC2
SOFTWARE
C E:5 , HOH E:61 , C F:3
BINDING SITE FOR RESIDUE NA E 162
3
AC3
SOFTWARE
C E:3 , C F:5 , HOH F:189
BINDING SITE FOR RESIDUE NA F 163
[
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SAPs(SNPs)/Variants
(1, 2)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_069535 (P193A, chain A/B, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_069535
P
193
A
DSRAD_HUMAN
Disease (AGS6)
---
A/B
P
193
A
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
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]
PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: DRADA_REPEAT (A:140-198|-)
;
View:
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Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
DRADA_REPEAT
PS50139
DRADA repeat profile.
DSRAD_HUMAN
133-202
293-360
1
A:140-198
-
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Exons
(1, 2)
Info
All Exons
Exon 1.4d (A:137-198 (gaps) | B:139-201)
View:
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All Exon Boundaries
1: Boundary 1.3/1.4d
2: Boundary 1.4d/1.5
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.3
ENST00000368474
3
ENSE00002196212
chr1:
154580682-154580468
215
DSRAD_HUMAN
1-5
5
0
-
-
1.4d
ENST00000368474
4d
ENSE00001734708
chr1:
154575102-154573517
1586
DSRAD_HUMAN
6-534
529
2
A:137-198 (gaps)
B:139-201
71
63
1.5
ENST00000368474
5
ENSE00001053903
chr1:
154571061-154570878
184
DSRAD_HUMAN
534-595
62
0
-
-
1.6
ENST00000368474
6
ENSE00001053914
chr1:
154570452-154570304
149
DSRAD_HUMAN
596-645
50
0
-
-
1.7
ENST00000368474
7
ENSE00001174669
chr1:
154569743-154569599
145
DSRAD_HUMAN
645-693
49
0
-
-
1.8a
ENST00000368474
8a
ENSE00001053911
chr1:
154569471-154569281
191
DSRAD_HUMAN
694-757
64
0
-
-
1.9b
ENST00000368474
9b
ENSE00001053906
chr1:
154562885-154562660
226
DSRAD_HUMAN
757-832
76
0
-
-
1.10
ENST00000368474
10
ENSE00001053908
chr1:
154562404-154562233
172
DSRAD_HUMAN
833-890
58
0
-
-
1.11
ENST00000368474
11
ENSE00001053913
chr1:
154561938-154561845
94
DSRAD_HUMAN
890-921
32
0
-
-
1.12a
ENST00000368474
12a
ENSE00001200522
chr1:
154561149-154561027
123
DSRAD_HUMAN
921-962
42
0
-
-
1.12d
ENST00000368474
12d
ENSE00001174692
chr1:
154560734-154560601
134
DSRAD_HUMAN
962-1007
46
0
-
-
1.13a
ENST00000368474
13a
ENSE00001174687
chr1:
154558839-154558657
183
DSRAD_HUMAN
1007-1068
62
0
-
-
1.14a
ENST00000368474
14a
ENSE00001174682
chr1:
154558341-154558229
113
DSRAD_HUMAN
1068-1105
38
0
-
-
1.15b
ENST00000368474
15b
ENSE00001174679
chr1:
154557820-154557693
128
DSRAD_HUMAN
1106-1148
43
0
-
-
1.16c
ENST00000368474
16c
ENSE00001880831
chr1:
154557519-154554543
2977
DSRAD_HUMAN
1148-1226
79
0
-
-
[
close EXON info
]
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d2gxba_ (A:)
1b: SCOP_d2gxbb_ (B:)
View:
Select:
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Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
DNA/RNA-binding 3-helical bundle
(1299)
Superfamily
:
Winged helix DNA-binding domain
(576)
Family
:
Z-DNA binding domain
(15)
Protein domain
:
Z-alpha domain of dsRNA-specific adenosine deaminase, ADAR1
(8)
Human (Homo sapiens) [TaxId: 9606]
(8)
1a
d2gxba_
A:
1b
d2gxbb_
B:
[
close SCOP info
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_2gxbB00 (B:139-201)
1b: CATH_2gxbA00 (A:137-198)
View:
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(
)
(
)
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)
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)
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)
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)
(
)
Organisms
(
)
(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Arc Repressor Mutant, subunit A
(1030)
Homologous Superfamily
:
'winged helix' repressor DNA binding domain
(507)
[unclassified]
(77)
1a
2gxbB00
B:139-201
1b
2gxbA00
A:137-198
[
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]
Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
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Chain E
Chain F
Asymmetric Unit 1
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Asym.Unit (34 KB)
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