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2GW6
Asym. Unit
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Asym.Unit (1.4 MB)
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Models
(20 )
Title
:
NMR STRUCTURE OF THE HUMAN TRNA ENDONUCLEASE SEN15 SUBUNIT
Authors
:
J. Song, J. L. Markley, Center For Eukaryotic Structural Genomics (Cesg)
Date
:
03 May 06 (Deposition) - 16 May 06 (Release) - 24 Feb 09 (Revision)
Method
:
SOLUTION NMR
Resolution
:
NOT APPLICABLE
Chains
:
Asym. Unit : A,B (20 x)
Keywords
:
Sen15_human, Trna Endonuclease, Structural Genomics, Psi, Protein Structure Initiative, Center For Eukaryotic Structural Genomics, Cesg, Protein Binding
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. Song, J. L. Markley
Three-Dimensional Structure Determined For A Subunit Of Human Trna Splicing Endonuclease (Sen15) Reveals A Novel Dimeric Fold.
J. Mol. Biol. V. 366 155 2007
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
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Sites
(0, 0)
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SAPs(SNPs)/Variants
(1, 2)
Info
(mutated residues are not available in "Model" view)
All SNPs/Variants
1: VAR_019458 (Q325H, chain A/B, )
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dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_019458
Q
59
H
SEN15_HUMAN
Polymorphism
1046934
A
B
Q
25
325
H
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
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Exons
(4, 8)
Info
All Exons
Exon 1.1a (A:1-11 | B:301-311)
Exon 1.2a (A:12-39 | B:312-339)
Exon 1.3a (A:39-84 | B:339-384)
Exon 1.6b (A:84-123 | B:384-423)
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1: Boundary -/1.1a
2: Boundary 1.1a/1.2a
3: Boundary 1.2a/1.3a
4: Boundary 1.3a/1.6b
5: Boundary 1.6b/1.7e
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000361641
1a
ENSE00000959414
chr1:
184020811-184021024
214
SEN15_HUMAN
1-45
45
2
A:1-11
B:301-311
11
11
1.2a
ENST00000361641
2a
ENSE00000822902
chr1:
184023488-184023569
82
SEN15_HUMAN
46-73
28
2
A:12-39
B:312-339
28
28
1.3a
ENST00000361641
3a
ENSE00000959415
chr1:
184023862-184023997
136
SEN15_HUMAN
73-118
46
2
A:39-84
B:339-384
46
46
1.6b
ENST00000361641
6b
ENSE00000959416
chr1:
184041291-184041432
142
SEN15_HUMAN
118-165
48
2
A:84-123
B:384-423
40
40
1.7e
ENST00000361641
7e
ENSE00001639873
chr1:
184041961-184043346
1386
SEN15_HUMAN
166-171
6
0
-
-
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SCOP Domains
(1, 2)
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All SCOP Domains
1a: SCOP_d2gw6a1 (A:2-123)
1b: SCOP_d2gw6b_ (B:)
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Protein Domains
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Organisms
(
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(
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Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Restriction endonuclease-like
(209)
Superfamily
:
tRNA-intron endonuclease catalytic domain-like
(6)
Family
:
tRNA-intron endonuclease catalytic domain-like
(6)
Protein domain
:
tRNA-splicing endonuclease subunit Sen15
(1)
Human (Homo sapiens) [TaxId: 9606]
(1)
1a
d2gw6a1
A:2-123
1b
d2gw6b_
B:
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