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Asym. Unit
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Asym.Unit (68 KB)
Biol.Unit 1 (32 KB)
Biol.Unit 2 (31 KB)
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(1)
Title
:
HUMAN CENTRIN 2 XERODERMA PIGMENTOSUM GROUP C PROTEIN COMPLEX
Authors
:
J. R. Thompson
Date
:
24 Mar 06 (Deposition) - 25 Apr 06 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.35
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,C (1x)
Biol. Unit 2: B,D (1x)
Keywords
:
Ef-Hand Superfamily, Dna Repair Complex, Cell Cycle
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. R. Thompson, Z. C. Ryan, J. L. Salisbury, R. Kumar
The Structure Of The Human Centrin 2-Xeroderma Pigmentosum Group C Protein Complex.
J. Biol. Chem. V. 281 18746 2006
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(2, 18)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
1b: CALCIUM ION (CAb)
1c: CALCIUM ION (CAc)
1d: CALCIUM ION (CAd)
2a: SELENOMETHIONINE (MSEa)
2b: SELENOMETHIONINE (MSEb)
2c: SELENOMETHIONINE (MSEc)
2d: SELENOMETHIONINE (MSEd)
2e: SELENOMETHIONINE (MSEe)
2f: SELENOMETHIONINE (MSEf)
2g: SELENOMETHIONINE (MSEg)
2h: SELENOMETHIONINE (MSEh)
2i: SELENOMETHIONINE (MSEi)
2j: SELENOMETHIONINE (MSEj)
2k: SELENOMETHIONINE (MSEk)
2l: SELENOMETHIONINE (MSEl)
2m: SELENOMETHIONINE (MSEm)
2n: SELENOMETHIONINE (MSEn)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CA
4
Ligand/Ion
CALCIUM ION
2
MSE
14
Mod. Amino Acid
SELENOMETHIONINE
[
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]
Sites
(4, 4)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASP A:114 , ASP A:116 , THR A:118 , LYS A:120 , ASN A:125 , HOH A:411
BINDING SITE FOR RESIDUE CA A 400
2
AC2
SOFTWARE
ASP A:150 , ASP A:152 , ASP A:154 , GLU A:156 , GLU A:161 , HOH A:490
BINDING SITE FOR RESIDUE CA A 401
3
AC3
SOFTWARE
ASP B:114 , ASP B:116 , THR B:118 , LYS B:120 , ASN B:125 , HOH B:437
BINDING SITE FOR RESIDUE CA B 402
4
AC4
SOFTWARE
ASP B:150 , ASP B:152 , ASP B:154 , GLU B:156 , GLU B:161 , HOH B:412
BINDING SITE FOR RESIDUE CA B 403
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
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PROSITE Patterns/Profiles
(2, 12)
Info
All PROSITE Patterns/Profiles
1: EF_HAND_2 (A:28-63,B:28-63|A:64-99,B:64-99|A:...)
2: EF_HAND_1 (A:41-53,B:41-53|A:150-162,B:150-16...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
EF_HAND_2
PS50222
EF-hand calcium-binding domain profile.
CETN2_HUMAN
28-63
64-99
101-136
137-172
8
A:28-63
B:28-63
A:64-99
B:64-99
A:101-136
B:101-136
A:137-172
B:137-168
2
EF_HAND_1
PS00018
EF-hand calcium-binding domain.
CETN2_HUMAN
41-53
150-162
4
A:41-53
B:41-53
A:150-162
B:150-162
[
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]
Exons
(5, 10)
Info
All Exons
Exon 1.15 (C:847-863 | D:847-863)
Exon 2.2a (A:24-54 | B:25-54)
Exon 2.3a (A:55-97 | B:55-97)
Exon 2.3c (A:98-143 | B:98-143)
Exon 2.4b (A:144-172 | B:144-168)
View:
Select:
Label:
All Exon Boundaries
1: Boundary 1.14a/1.15
2: Boundary 1.15/1.16c
3: Boundary 2.1/2.2a
4: Boundary 2.2a/2.3a
5: Boundary 2.3a/2.3c
6: Boundary 2.3c/2.4b
7: Boundary 2.4b/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000285021
1a
ENSE00002078782
chr3:
14220283-14219966
318
XPC_HUMAN
1-35
35
0
-
-
1.2
ENST00000285021
2
ENSE00001160413
chr3:
14214562-14214367
196
XPC_HUMAN
35-100
66
0
-
-
1.3c
ENST00000285021
3c
ENSE00001160407
chr3:
14212050-14211938
113
XPC_HUMAN
100-138
39
0
-
-
1.4b
ENST00000285021
4b
ENSE00001711961
chr3:
14209880-14209757
124
XPC_HUMAN
138-179
42
0
-
-
1.5b
ENST00000285021
5b
ENSE00001790537
chr3:
14208753-14208669
85
XPC_HUMAN
179-207
29
0
-
-
1.6
ENST00000285021
6
ENSE00001693781
chr3:
14207085-14206928
158
XPC_HUMAN
208-260
53
0
-
-
1.7b
ENST00000285021
7b
ENSE00001160376
chr3:
14206433-14206313
121
XPC_HUMAN
260-300
41
0
-
-
1.8
ENST00000285021
8
ENSE00001160371
chr3:
14201330-14201241
90
XPC_HUMAN
301-330
30
0
-
-
1.9b
ENST00000285021
9b
ENSE00001017578
chr3:
14200392-14199511
882
XPC_HUMAN
331-624
294
0
-
-
1.10
ENST00000285021
10
ENSE00001289098
chr3:
14197995-14197835
161
XPC_HUMAN
625-678
54
0
-
-
1.11
ENST00000285021
11
ENSE00001160334
chr3:
14193916-14193835
82
XPC_HUMAN
678-705
28
0
-
-
1.12a
ENST00000285021
12a
ENSE00001160328
chr3:
14190448-14190314
135
XPC_HUMAN
706-750
45
0
-
-
1.13
ENST00000285021
13
ENSE00001160320
chr3:
14190231-14190062
170
XPC_HUMAN
751-807
57
0
-
-
1.14a
ENST00000285021
14a
ENSE00001160311
chr3:
14189501-14189408
94
XPC_HUMAN
807-838
32
0
-
-
1.15
ENST00000285021
15
ENSE00001160303
chr3:
14188879-14188790
90
XPC_HUMAN
839-868
30
2
C:847-863
D:847-863
17
17
1.16c
ENST00000285021
16c
ENSE00001914924
chr3:
14187659-14186647
1013
XPC_HUMAN
869-940
72
0
-
-
2.1
ENST00000370277
1
ENSE00001452251
X:151999321-151999252
70
CETN2_HUMAN
1-1
1
0
-
-
2.2a
ENST00000370277
2a
ENSE00001302515
X:151998304-151998146
159
CETN2_HUMAN
2-54
53
2
A:24-54
B:25-54
31
30
2.3a
ENST00000370277
3a
ENSE00000979874
X:151997821-151997693
129
CETN2_HUMAN
55-97
43
2
A:55-97
B:55-97
43
43
2.3c
ENST00000370277
3c
ENSE00000979875
X:151997218-151997081
138
CETN2_HUMAN
98-143
46
2
A:98-143
B:98-143
46
46
2.4b
ENST00000370277
4b
ENSE00001452248
X:151996474-151995517
958
CETN2_HUMAN
144-172
29
2
A:144-172
B:144-168
29
25
[
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SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d2ggma1 (A:24-166)
1b: SCOP_d2ggmb1 (B:25-166)
View:
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(
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(
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Folds
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(
)
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(
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(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
EF Hand-like
(739)
Superfamily
:
EF-hand
(657)
Family
:
Calmodulin-like
(356)
Protein domain
:
Calmodulin
(152)
Human (Homo sapiens) [TaxId: 9606]
(74)
1a
d2ggma1
A:24-166
1b
d2ggmb1
B:25-166
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CATH Domains
(0, 0)
Info
all CATH domains
View:
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Sorry, no Info available
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
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Asym.Unit (68 KB)
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