PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
No precomputed SNP/Variant structure found.
Calculating the structure may take several minutes.
PLEASE WAIT...
Getting 'PROSITE' information from database.
PLEASE WAIT...
Getting 'Exon' information from database.
2FZS
Asym. Unit
Info
Asym.Unit (497 KB)
Biol.Unit 1 (482 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
(1)
Title
:
CRYSTAL STRUCTURE OF E. COLI CLPP WITH A PEPTIDE CHLOROMETHYL KETONE COVALENTLY BOUND AT THE ACTIVE SITE
Authors
:
A. Szyk, M. R. Maurizi
Date
:
10 Feb 06 (Deposition) - 23 May 06 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.90
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L,M,N
Biol. Unit 1: A,B,C,D,E,F,G,H,I,J,K,L,M,N (1x)
Keywords
:
Atp-Dependent Clpp Protease, Z-Leu-Tyr Chloromethyl Ketone Inhibitor, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. Szyk, M. R. Maurizi
Crystal Structure At 1. 9A Of E. Coli Clpp With A Peptide Covalently Bound At The Active Site.
J. Struct. Biol. V. 156 165 2006
[
close entry info
]
Hetero Components
(3, 40)
Info
All Hetero Components
1a: N~2~-[(BENZYLOXY)CARBONYL]-N-[(1S,... (CMQa)
1b: N~2~-[(BENZYLOXY)CARBONYL]-N-[(1S,... (CMQb)
1c: N~2~-[(BENZYLOXY)CARBONYL]-N-[(1S,... (CMQc)
1d: N~2~-[(BENZYLOXY)CARBONYL]-N-[(1S,... (CMQd)
1e: N~2~-[(BENZYLOXY)CARBONYL]-N-[(1S,... (CMQe)
1f: N~2~-[(BENZYLOXY)CARBONYL]-N-[(1S,... (CMQf)
1g: N~2~-[(BENZYLOXY)CARBONYL]-N-[(1S,... (CMQg)
1h: N~2~-[(BENZYLOXY)CARBONYL]-N-[(1S,... (CMQh)
1i: N~2~-[(BENZYLOXY)CARBONYL]-N-[(1S,... (CMQi)
1j: N~2~-[(BENZYLOXY)CARBONYL]-N-[(1S,... (CMQj)
1k: N~2~-[(BENZYLOXY)CARBONYL]-N-[(1S,... (CMQk)
1l: N~2~-[(BENZYLOXY)CARBONYL]-N-[(1S,... (CMQl)
1m: N~2~-[(BENZYLOXY)CARBONYL]-N-[(1S,... (CMQm)
1n: N~2~-[(BENZYLOXY)CARBONYL]-N-[(1S,... (CMQn)
2a: GLYCEROL (GOLa)
2b: GLYCEROL (GOLb)
2c: GLYCEROL (GOLc)
2d: GLYCEROL (GOLd)
2e: GLYCEROL (GOLe)
2f: GLYCEROL (GOLf)
2g: GLYCEROL (GOLg)
2h: GLYCEROL (GOLh)
2i: GLYCEROL (GOLi)
2j: GLYCEROL (GOLj)
2k: GLYCEROL (GOLk)
3a: TRIETHYLENE GLYCOL (PGEa)
3b: TRIETHYLENE GLYCOL (PGEb)
3c: TRIETHYLENE GLYCOL (PGEc)
3d: TRIETHYLENE GLYCOL (PGEd)
3e: TRIETHYLENE GLYCOL (PGEe)
3f: TRIETHYLENE GLYCOL (PGEf)
3g: TRIETHYLENE GLYCOL (PGEg)
3h: TRIETHYLENE GLYCOL (PGEh)
3i: TRIETHYLENE GLYCOL (PGEi)
3j: TRIETHYLENE GLYCOL (PGEj)
3k: TRIETHYLENE GLYCOL (PGEk)
3l: TRIETHYLENE GLYCOL (PGEl)
3m: TRIETHYLENE GLYCOL (PGEm)
3n: TRIETHYLENE GLYCOL (PGEn)
3o: TRIETHYLENE GLYCOL (PGEo)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CMQ
14
Ligand/Ion
N~2~-[(BENZYLOXY)CARBONYL]-N-[(1S,2S)-2-HYDROXY-1-(4-HYDROXYBENZYL)PROPYL]-L-LEUCINAMIDE
2
GOL
11
Ligand/Ion
GLYCEROL
3
PGE
15
Ligand/Ion
TRIETHYLENE GLYCOL
[
close Hetero Component info
]
Sites
(40, 40)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
30: DC3 (SOFTWARE)
31: DC4 (SOFTWARE)
32: DC5 (SOFTWARE)
33: DC6 (SOFTWARE)
34: DC7 (SOFTWARE)
35: DC8 (SOFTWARE)
36: DC9 (SOFTWARE)
37: EC1 (SOFTWARE)
38: EC2 (SOFTWARE)
39: EC3 (SOFTWARE)
40: EC4 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLY A:67 , GLY A:68 , VAL A:69 , ILE A:70 , SER A:97 , MET A:98 , HIS A:122 , PRO A:124 , LEU A:125 , MET A:149 , HOH A:4017 , HOH A:4052 , HOH A:4117 , HOH A:4143 , HOH A:4174 , GOL B:3002 , HOH B:4046
BINDING SITE FOR RESIDUE CMQ A 501
02
AC2
SOFTWARE
GLY B:67 , GLY B:68 , VAL B:69 , ILE B:70 , SER B:97 , MET B:98 , HIS B:122 , PRO B:124 , LEU B:125 , ILE B:142 , MET B:149 , HOH B:4017 , HOH B:4021 , HOH B:4129 , GOL C:3005 , HOH C:4091
BINDING SITE FOR RESIDUE CMQ B 502
03
AC3
SOFTWARE
GLY C:67 , GLY C:68 , VAL C:69 , ILE C:70 , SER C:97 , MET C:98 , HIS C:122 , PRO C:124 , LEU C:125 , ILE C:142 , MET C:149 , GOL C:3006 , HOH C:4009 , HOH C:4057 , HOH C:4128
BINDING SITE FOR RESIDUE CMQ C 503
04
AC4
SOFTWARE
GLY D:67 , GLY D:68 , VAL D:69 , ILE D:70 , SER D:97 , MET D:98 , HIS D:122 , PRO D:124 , LEU D:125 , MET D:149 , HOH D:4010 , HOH D:4020 , HOH D:4121 , HOH D:4140
BINDING SITE FOR RESIDUE CMQ D 504
05
AC5
SOFTWARE
GLY E:67 , GLY E:68 , VAL E:69 , ILE E:70 , SER E:97 , MET E:98 , HIS E:122 , PRO E:124 , LEU E:125 , ILE E:142 , MET E:149 , HOH E:4012 , HOH E:4018 , HOH E:4102 , HOH E:4152 , ARG F:118 , HOH F:4158
BINDING SITE FOR RESIDUE CMQ E 505
06
AC6
SOFTWARE
GLY F:67 , GLY F:68 , VAL F:69 , ILE F:70 , SER F:97 , MET F:98 , HIS F:122 , PRO F:124 , LEU F:125 , ILE F:142 , MET F:149 , HOH F:4032 , HOH F:4045 , HOH F:4077 , HOH F:4167 , GOL G:3009
BINDING SITE FOR RESIDUE CMQ F 506
07
AC7
SOFTWARE
ARG A:118 , HOH A:4211 , GLY G:67 , GLY G:68 , VAL G:69 , ILE G:70 , SER G:97 , MET G:98 , HIS G:122 , PRO G:124 , LEU G:125 , ILE G:142 , MET G:149 , HOH G:4038 , HOH G:4043 , HOH G:4086 , HOH G:4090 , HOH G:4221
BINDING SITE FOR RESIDUE CMQ G 507
08
AC8
SOFTWARE
GLY H:67 , GLY H:68 , VAL H:69 , ILE H:70 , SER H:97 , MET H:98 , HIS H:122 , PRO H:124 , LEU H:125 , ILE H:142 , MET H:149 , HOH H:4021 , HOH H:4037 , HOH H:4076 , HOH H:4086 , GOL N:3007
BINDING SITE FOR RESIDUE CMQ H 508
09
AC9
SOFTWARE
GOL H:3008 , GLY I:67 , GLY I:68 , VAL I:69 , ILE I:70 , SER I:97 , MET I:98 , HIS I:122 , PRO I:124 , LEU I:125 , ILE I:142 , MET I:149 , ASN I:150 , HOH I:4016 , HOH I:4051 , HOH I:4126
BINDING SITE FOR RESIDUE CMQ I 509
10
BC1
SOFTWARE
HOH I:4063 , GLY J:67 , GLY J:68 , VAL J:69 , ILE J:70 , SER J:97 , MET J:98 , HIS J:122 , PRO J:124 , LEU J:125 , ILE J:142 , VAL J:145 , MET J:149 , HOH J:4063 , HOH J:4083 , HOH J:4099 , HOH J:4155 , HOH J:4159 , HOH J:4178 , HOH J:4180
BINDING SITE FOR RESIDUE CMQ J 510
11
BC2
SOFTWARE
HOH J:4045 , GLY K:67 , GLY K:68 , VAL K:69 , ILE K:70 , SER K:97 , MET K:98 , HIS K:122 , PRO K:124 , LEU K:125 , GLU K:141 , ILE K:142 , MET K:149 , HOH K:4021 , HOH K:4029 , HOH K:4053 , HOH K:4134
BINDING SITE FOR RESIDUE CMQ K 511
12
BC3
SOFTWARE
HOH E:4122 , GOL K:3010 , GLY L:67 , GLY L:68 , VAL L:69 , ILE L:70 , SER L:97 , MET L:98 , HIS L:122 , PRO L:124 , LEU L:125 , ILE L:142 , MET L:149 , HOH L:4015 , HOH L:4025 , HOH L:4079 , HOH L:4248
BINDING SITE FOR RESIDUE CMQ L 512
13
BC4
SOFTWARE
GOL L:3011 , GLY M:67 , GLY M:68 , VAL M:69 , ILE M:70 , SER M:97 , MET M:98 , HIS M:122 , PRO M:124 , LEU M:125 , ILE M:142 , MET M:149 , HOH M:4018 , HOH M:4034 , HOH M:4204
BINDING SITE FOR RESIDUE CMQ M 513
14
BC5
SOFTWARE
GLY N:67 , GLY N:68 , VAL N:69 , ILE N:70 , SER N:97 , MET N:98 , HIS N:122 , PRO N:124 , LEU N:125 , ILE N:142 , MET N:149 , HOH N:4017 , HOH N:4032 , HOH N:4092 , HOH N:4120 , HOH N:4122 , HOH N:4145
BINDING SITE FOR RESIDUE CMQ N 514
15
BC6
SOFTWARE
TYR A:60 , TYR A:62 , ARG A:192 , HOH A:4061 , HOH A:4132 , HOH A:4217
BINDING SITE FOR RESIDUE PGE A 4001
16
BC7
SOFTWARE
GLU B:26 , TYR B:62 , ILE B:90 , ARG B:192 , ASN B:193 , HOH B:4187
BINDING SITE FOR RESIDUE PGE B 4002
17
BC8
SOFTWARE
TYR C:62 , ARG C:192 , HOH C:4087
BINDING SITE FOR RESIDUE PGE C 4003
18
BC9
SOFTWARE
TYR D:60 , TYR D:62 , PHE D:112 , LEU D:189 , ARG D:192 , HOH D:4123
BINDING SITE FOR RESIDUE PGE D 4004
19
CC1
SOFTWARE
TYR E:60 , ARG E:192 , HOH E:4192
BINDING SITE FOR RESIDUE PGE E 4005
20
CC2
SOFTWARE
TYR F:60 , TYR F:62 , ARG F:192 , HOH F:4103 , HOH F:4201
BINDING SITE FOR RESIDUE PGE F 4006
21
CC3
SOFTWARE
VAL G:28 , TYR G:60 , TYR G:62 , ARG G:192 , HOH G:4082 , HOH G:4104
BINDING SITE FOR RESIDUE PGE G 4007
22
CC4
SOFTWARE
TYR H:60 , TYR H:62 , LEU H:189 , ARG H:192 , HOH H:4127 , HOH H:4165
BINDING SITE FOR RESIDUE PGE H 4008
23
CC5
SOFTWARE
TYR I:60 , ILE I:90 , ARG I:192
BINDING SITE FOR RESIDUE PGE I 4009
24
CC6
SOFTWARE
TYR J:62 , PHE J:112 , LEU J:189 , ARG J:192 , HOH J:4124 , HOH J:4171
BINDING SITE FOR RESIDUE PGE J 4010
25
CC7
SOFTWARE
TYR K:62 , LEU K:189 , ARG K:192
BINDING SITE FOR RESIDUE PGE K 4011
26
CC8
SOFTWARE
TYR L:62 , LEU L:189 , ARG L:192 , HOH L:4192
BINDING SITE FOR RESIDUE PGE L 4012
27
CC9
SOFTWARE
VAL M:28 , TYR M:62 , LEU M:189 , ARG M:192 , HOH M:4059 , HOH M:4210
BINDING SITE FOR RESIDUE PGE M 4013
28
DC1
SOFTWARE
VAL N:28 , TYR N:60 , TYR N:62 , ILE N:90 , PHE N:112 , LEU N:189 , ARG N:192 , HOH N:4132
BINDING SITE FOR RESIDUE PGE N 4014
29
DC2
SOFTWARE
THR K:157 , GLN K:159 , TYR K:182 , HOH K:4195 , HOH K:4201 , HOH N:4147
BINDING SITE FOR RESIDUE PGE K 4015
30
DC3
SOFTWARE
ARG A:118 , LEU A:174 , SER A:175 , HOH A:4124 , HOH A:4125 , HOH A:4230 , GLU G:141 , ARG G:148
BINDING SITE FOR RESIDUE GOL A 3001
31
DC4
SOFTWARE
GLU A:141 , CMQ A:501 , GLN B:94 , ARG B:118 , PHE B:173
BINDING SITE FOR RESIDUE GOL B 3002
32
DC5
SOFTWARE
THR B:157 , GLN B:159 , GLU B:181
BINDING SITE FOR RESIDUE GOL B 3003
33
DC6
SOFTWARE
GLU E:141 , LYS E:144 , VAL E:145 , ARG F:118 , LEU F:174 , SER F:175 , HOH F:4028 , HOH F:4054 , HOH F:4191
BINDING SITE FOR RESIDUE GOL F 3004
34
DC7
SOFTWARE
GLU B:141 , CMQ B:502 , GLN C:94 , ARG C:118 , MET C:120 , PHE C:173 , HOH C:4091 , HOH C:4111
BINDING SITE FOR RESIDUE GOL C 3005
35
DC8
SOFTWARE
THR C:71 , GLU C:141 , CMQ C:503 , HOH C:4108 , GLN D:94 , ARG D:118 , PHE D:173 , HOH D:4147
BINDING SITE FOR RESIDUE GOL C 3006
36
DC9
SOFTWARE
THR H:71 , GLU H:141 , CMQ H:508 , GLN N:94 , ARG N:118 , PHE N:173
BINDING SITE FOR RESIDUE GOL N 3007
37
EC1
SOFTWARE
GLN H:94 , ARG H:118 , HOH H:4097 , HOH H:4135 , GLU I:141 , VAL I:145 , CMQ I:509
BINDING SITE FOR RESIDUE GOL H 3008
38
EC2
SOFTWARE
GLU F:141 , CMQ F:506 , GLN G:94 , ARG G:118 , PHE G:173 , HOH G:4054 , HOH G:4194
BINDING SITE FOR RESIDUE GOL G 3009
39
EC3
SOFTWARE
GLN K:94 , PHE K:173 , HOH K:4104 , GLU L:141 , CMQ L:512
BINDING SITE FOR RESIDUE GOL K 3010
40
EC4
SOFTWARE
GLN L:94 , PHE L:173 , HOH L:4202 , HOH L:4240 , GLU M:141 , CMQ M:513
BINDING SITE FOR RESIDUE GOL L 3011
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(2, 28)
Info
All PROSITE Patterns/Profiles
1: CLP_PROTEASE_SER (A:89-100,B:89-100,C:89-100,D:89-10...)
2: CLP_PROTEASE_HIS (A:111-124,B:111-124,C:111-124,D:11...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
CLP_PROTEASE_SER
PS00381
Endopeptidase Clp serine active site.
CLPP_ECOLI
103-114
14
A:89-100
B:89-100
C:89-100
D:89-100
E:89-100
F:89-100
G:89-100
H:89-100
I:89-100
J:89-100
K:89-100
L:89-100
M:89-100
N:89-100
2
CLP_PROTEASE_HIS
PS00382
Endopeptidase Clp histidine active site.
CLPP_ECOLI
125-138
14
A:111-124
B:111-124
C:111-124
D:111-124
E:111-124
F:111-124
G:111-124
H:111-124
I:111-124
J:111-124
K:111-124
L:111-124
M:111-124
N:111-124
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
View:
Select:
Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 14)
Info
All SCOP Domains
1a: SCOP_d2fzsa_ (A:)
1b: SCOP_d2fzsb_ (B:)
1c: SCOP_d2fzsc_ (C:)
1d: SCOP_d2fzsd_ (D:)
1e: SCOP_d2fzse_ (E:)
1f: SCOP_d2fzsf_ (F:)
1g: SCOP_d2fzsg_ (G:)
1h: SCOP_d2fzsh_ (H:)
1i: SCOP_d2fzsi_ (I:)
1j: SCOP_d2fzsj_ (J:)
1k: SCOP_d2fzsk_ (K:)
1l: SCOP_d2fzsl_ (L:)
1m: SCOP_d2fzsm_ (M:)
1n: SCOP_d2fzsn_ (N:)
View:
Select:
Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
ClpP/crotonase
(207)
Superfamily
:
ClpP/crotonase
(207)
Family
:
Clp protease, ClpP subunit
(31)
Protein domain
:
automated matches
(16)
Escherichia coli [TaxId: 562]
(3)
1a
d2fzsa_
A:
1b
d2fzsb_
B:
1c
d2fzsc_
C:
1d
d2fzsd_
D:
1e
d2fzse_
E:
1f
d2fzsf_
F:
1g
d2fzsg_
G:
1h
d2fzsh_
H:
1i
d2fzsi_
I:
1j
d2fzsj_
J:
1k
d2fzsk_
K:
1l
d2fzsl_
L:
1m
d2fzsm_
M:
1n
d2fzsn_
N:
[
close SCOP info
]
CATH Domains
(1, 14)
Info
all CATH domains
1a: CATH_2fzsB00 (B:2-193)
1b: CATH_2fzsE00 (E:2-193)
1c: CATH_2fzsH00 (H:2-193)
1d: CATH_2fzsI00 (I:2-193)
1e: CATH_2fzsL00 (L:2-193)
1f: CATH_2fzsN00 (N:2-193)
1g: CATH_2fzsA00 (A:2-193)
1h: CATH_2fzsK00 (K:2-193)
1i: CATH_2fzsM00 (M:1-193)
1j: CATH_2fzsD00 (D:2-193)
1k: CATH_2fzsF00 (F:2-193)
1l: CATH_2fzsJ00 (J:2-193)
1m: CATH_2fzsC00 (C:3-193)
1n: CATH_2fzsG00 (G:2-193)
View:
Select:
Label:
Classes
(
)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Alpha-Beta Complex
(3881)
Topology
:
2-enoyl-CoA Hydratase; Chain A, domain 1
(89)
Homologous Superfamily
:
2-enoyl-CoA Hydratase; Chain A, domain 1
(89)
Escherichia coli. Organism_taxid: 562. Strain: k12, mg1655.
(1)
1a
2fzsB00
B:2-193
1b
2fzsE00
E:2-193
1c
2fzsH00
H:2-193
1d
2fzsI00
I:2-193
1e
2fzsL00
L:2-193
1f
2fzsN00
N:2-193
1g
2fzsA00
A:2-193
1h
2fzsK00
K:2-193
1i
2fzsM00
M:1-193
1j
2fzsD00
D:2-193
1k
2fzsF00
F:2-193
1l
2fzsJ00
J:2-193
1m
2fzsC00
C:3-193
1n
2fzsG00
G:2-193
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Chain B
Chain C
Chain D
Chain E
Chain F
Chain G
Chain H
Chain I
Chain J
Chain K
Chain L
Chain M
Chain N
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (497 KB)
Header - Asym.Unit
Biol.Unit 1 (482 KB)
Header - Biol.Unit 1
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
2FZS
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help
