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2FVL
Biol. Unit 1
Info
Asym.Unit (185 KB)
Biol.Unit 1 (62 KB)
Biol.Unit 2 (61 KB)
Biol.Unit 3 (62 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF HUMAN 3-ALPHA HYDROXYSTEROID/DIHYDRODIOL DEHYDROGENASE (AKR1C4) COMPLEXED WITH NADP+
Authors
:
E. Ugochukwu, C. Smee, K. Guo, P. Lukacik, K. Kavanagh, J. E. Debreczeni Delft, J. Weigelt, M. Sundstrom, C. Arrowsmith, A. Edwards, U. Opperm Structural Genomics Consortium (Sgc)
Date
:
31 Jan 06 (Deposition) - 21 Feb 06 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.40
Chains
:
Asym. Unit : A,B,C
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Keywords
:
Chlordecone Reductase, Aldo-Keto Reductase, 3Alpha-Hsd1, Dd4, Structural Genomics, Structural Genomics Consortium, Sgc, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
E. Ugochukwu, C. Smee, K. Guo, P. Lukacik, K. Kavanagh, J. E. Debreczeni, F. Von Delft, J. Weigelt, M. Sundstrom, C. Arrowsmith, A. Edwards, U. Oppermann
Crystal Structure Of Human 3-Alpha Hydroxysteroid/Dihydrodiol Dehydrogenase (Akr1C4) Complexed With Nadp+
To Be Published
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Hetero Components
(1, 1)
Info
All Hetero Components
1a: NADP NICOTINAMIDE-ADENINE-DINUCLEO... (NAPa)
1b: NADP NICOTINAMIDE-ADENINE-DINUCLEO... (NAPb)
1c: NADP NICOTINAMIDE-ADENINE-DINUCLEO... (NAPc)
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Label:
No.
Name
Count
Type
Full Name
1
NAP
1
Ligand/Ion
NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
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Sites
(1, 1)
Info
All Sites
1: AC1 (SOFTWARE)
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
GLY A:22 , THR A:23 , TYR A:24 , ASP A:50 , TYR A:55 , HIS A:117 , SER A:166 , ASN A:167 , GLN A:190 , HIS A:216 , SER A:217 , ALA A:218 , LEU A:219 , GLY A:220 , THR A:221 , GLN A:222 , ALA A:253 , LEU A:268 , LYS A:270 , SER A:271 , TYR A:272 , ARG A:276 , GLU A:279 , ASN A:280 , HOH A:1052 , HOH A:1059 , HOH A:1084 , HOH A:1102 , HOH A:1232 , HOH A:1262 , HOH C:1169 , HOH C:1210
BINDING SITE FOR RESIDUE NAP A 1001
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SAPs(SNPs)/Variants
(5, 5)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
1: VAR_028240 (G135E, chain A, )
2: VAR_013290 (S145C, chain A, )
3: VAR_028241 (Y170Y, chain A, )
4: VAR_028242 (R250R, chain A, )
5: VAR_013291 (L311V, chain A, )
View:
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Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_028240
G
135
E
AK1C4_HUMAN
Polymorphism
11253043
A
G
135
E
2
UniProt
VAR_013290
S
145
C
AK1C4_HUMAN
Polymorphism
3829125
A
S
145
C
3
UniProt
VAR_028241
C
170
Y
AK1C4_HUMAN
Polymorphism
17851824
A
Y
170
Y
4
UniProt
VAR_028242
Q
250
R
AK1C4_HUMAN
Polymorphism
4880718
A
R
250
R
5
UniProt
VAR_013291
L
311
V
AK1C4_HUMAN
Polymorphism
17134592
A
L
311
V
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(3, 3)
Info
All PROSITE Patterns/Profiles
1: ALDOKETO_REDUCTASE_1 (A:45-62)
2: ALDOKETO_REDUCTASE_2 (A:151-168)
3: ALDOKETO_REDUCTASE_3 (A:268-283)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ALDOKETO_REDUCTASE_1
PS00798
Aldo/keto reductase family signature 1.
AK1C4_HUMAN
45-62
1
A:45-62
-
-
2
ALDOKETO_REDUCTASE_2
PS00062
Aldo/keto reductase family signature 2.
AK1C4_HUMAN
151-168
1
A:151-168
-
-
3
ALDOKETO_REDUCTASE_3
PS00063
Aldo/keto reductase family putative active site signature.
AK1C4_HUMAN
268-283
1
A:268-283
-
-
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Exons
(0, 0)
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All Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
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SCOP Domains
(1, 3)
Info
All SCOP Domains
1a: SCOP_d2fvla_ (A:)
1b: SCOP_d2fvlb_ (B:)
1c: SCOP_d2fvlc_ (C:)
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Organisms
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Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
TIM beta/alpha-barrel
(3956)
Superfamily
:
NAD(P)-linked oxidoreductase
(286)
Family
:
Aldo-keto reductases (NADP)
(251)
Protein domain
:
automated matches
(62)
Human (Homo sapiens) [TaxId: 9606]
(48)
1a
d2fvla_
A:
1b
d2fvlb_
B:
1c
d2fvlc_
C:
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CATH Domains
(1, 3)
Info
all CATH domains
1a: CATH_2fvlA00 (A:1-323)
1b: CATH_2fvlB00 (B:1-323)
1c: CATH_2fvlC00 (C:1-323)
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Class
:
Alpha Beta
(26913)
Architecture
:
Alpha-Beta Barrel
(2994)
Topology
:
TIM Barrel
(2806)
Homologous Superfamily
:
NADP-dependent oxidoreductase
(181)
Human (Homo sapiens)
(116)
1a
2fvlA00
A:1-323
1b
2fvlB00
B:1-323
1c
2fvlC00
C:1-323
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Pfam Domains
(0, 0)
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Chain A
Asymmetric Unit 1
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Asym.Unit (185 KB)
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Biol.Unit 3 (62 KB)
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