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2FNA
Asym. Unit
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Asym.Unit (133 KB)
Biol.Unit 1 (65 KB)
Biol.Unit 2 (65 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF AN ARCHAEAL AAA+ ATPASE (SSO1545) FROM SULFOLOBUS SOLFATARICUS P2 AT 2.00 A RESOLUTION
Authors
:
Joint Center For Structural Genomics (Jcsg)
Date
:
10 Jan 06 (Deposition) - 07 Feb 06 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.00
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Structural Genomics, Joint Center For Structural Genomics, Jcsg, Protein Structure Initiative, Psi-2, Atp-Binding Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Q. Xu, C. L. Rife, D. Carlton, M. D. Miller, S. S. Krishna, M. A. Elsliger P. Abdubek, T. Astakhova, H. J. Chiu, T. Clayton, L. Duan, J. Feuerhelm S. K. Grzechnik, J. Hale, G. W. Han, L. Jaroszewski, K. K. Jin, H. E. Klock, M. W. Knuth, A. Kumar, D. Mcmullan, A. T. Morse, E. Nigoghossian, L. Okach, S. Oommachen, J. Paulsen, R. Reyes, H. Van Den Bedem, K. O. Hodgson, J. Wooley, A. M. Deacon, A. Godzik, S. A. Lesley, I. A. Wilson
Crystal Structure Of A Novel Archaeal Aaa+ Atpase Sso1545 From Sulfolobus Solfataricus.
Proteins V. 74 1041 2009
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Hetero Components
(4, 21)
Info
All Hetero Components
1a: ADENOSINE-5'-DIPHOSPHATE (ADPa)
1b: ADENOSINE-5'-DIPHOSPHATE (ADPb)
2a: 1,2-ETHANEDIOL (EDOa)
2b: 1,2-ETHANEDIOL (EDOb)
2c: 1,2-ETHANEDIOL (EDOc)
2d: 1,2-ETHANEDIOL (EDOd)
2e: 1,2-ETHANEDIOL (EDOe)
2f: 1,2-ETHANEDIOL (EDOf)
2g: 1,2-ETHANEDIOL (EDOg)
3a: MAGNESIUM ION (MGa)
3b: MAGNESIUM ION (MGb)
4a: SELENOMETHIONINE (MSEa)
4b: SELENOMETHIONINE (MSEb)
4c: SELENOMETHIONINE (MSEc)
4d: SELENOMETHIONINE (MSEd)
4e: SELENOMETHIONINE (MSEe)
4f: SELENOMETHIONINE (MSEf)
4g: SELENOMETHIONINE (MSEg)
4h: SELENOMETHIONINE (MSEh)
4i: SELENOMETHIONINE (MSEi)
4j: SELENOMETHIONINE (MSEj)
View:
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Label:
No.
Name
Count
Type
Full Name
1
ADP
2
Ligand/Ion
ADENOSINE-5'-DIPHOSPHATE
2
EDO
7
Ligand/Ion
1,2-ETHANEDIOL
3
MG
2
Ligand/Ion
MAGNESIUM ION
4
MSE
10
Mod. Amino Acid
SELENOMETHIONINE
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Sites
(11, 11)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
SER A:43 , ADP A:500 , HOH A:637 , HOH A:668 , HOH A:669 , HOH A:670
BINDING SITE FOR RESIDUE MG A 400
02
AC2
SOFTWARE
SER B:43 , ADP B:500 , HOH B:666 , HOH B:667 , HOH B:683 , HOH B:684
BINDING SITE FOR RESIDUE MG B 400
03
AC3
SOFTWARE
ASP A:4 , SER A:6 , PRO A:7 , LYS A:8 , ASP A:13 , PHE A:14 , PHE A:15 , ARG A:39 , THR A:40 , GLY A:41 , LYS A:42 , SER A:43 , SER A:44 , PHE A:216 , PRO A:242 , GLY A:243 , THR A:246 , MG A:400 , EDO A:503 , HOH A:519 , HOH A:616 , HOH A:637 , HOH A:668 , HOH A:670
BINDING SITE FOR RESIDUE ADP A 500
04
AC4
SOFTWARE
ASP B:4 , THR B:5 , SER B:6 , PRO B:7 , LYS B:8 , PHE B:14 , PHE B:15 , ARG B:39 , THR B:40 , GLY B:41 , LYS B:42 , SER B:43 , SER B:44 , PHE B:216 , PRO B:242 , GLY B:243 , THR B:246 , MG B:400 , HOH B:515 , HOH B:600 , HOH B:628 , HOH B:666 , HOH B:683 , HOH B:684
BINDING SITE FOR RESIDUE ADP B 500
05
AC5
SOFTWARE
PRO A:56 , TYR A:57 , LYS A:86 , LEU A:87 , HOH A:579
BINDING SITE FOR RESIDUE EDO A 501
06
AC6
SOFTWARE
TYR A:183 , ALA A:199 , PHE A:200 , HOH A:627 , PHE B:250 , ILE B:251 , ASP B:254
BINDING SITE FOR RESIDUE EDO A 502
07
AC7
SOFTWARE
ARG A:39 , GLY A:243 , TYR A:268 , ADP A:500 , HOH A:589
BINDING SITE FOR RESIDUE EDO A 503
08
AC8
SOFTWARE
LYS A:47 , TYR A:57
BINDING SITE FOR RESIDUE EDO A 504
09
AC9
SOFTWARE
ASN A:155 , ARG A:187 , ASP A:190 , SER A:193 , PRO A:194
BINDING SITE FOR RESIDUE EDO A 505
10
BC1
SOFTWARE
ARG A:296 , ALA A:354 , PHE A:355
BINDING SITE FOR RESIDUE EDO A 506
11
BC2
SOFTWARE
LEU B:121 , SER B:122 , PHE B:123 , ALA B:124 , ALA B:159
BINDING SITE FOR RESIDUE EDO B 501
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
Info
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Exons
(0, 0)
Info
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 4)
Info
All SCOP Domains
1a: SCOP_d2fnaa1 (A:284-356)
1b: SCOP_d2fnab1 (B:284-356)
2a: SCOP_d2fnaa2 (A:1-283)
2b: SCOP_d2fnab2 (B:0-283)
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Protein Domains
(
)
(
)
Organisms
(
)
(
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Class
:
All alpha proteins
(14657)
Fold
:
DNA/RNA-binding 3-helical bundle
(1299)
Superfamily
:
Winged helix DNA-binding domain
(576)
Family
:
Helicase DNA-binding domain
(13)
Protein domain
:
Hypothetical protein SSO1545, C-terminal domain
(1)
Sulfolobus solfataricus [TaxId: 2287]
(1)
1a
d2fnaa1
A:284-356
1b
d2fnab1
B:284-356
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Superfamily
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Family
:
Extended AAA-ATPase domain
(92)
Protein domain
:
Archaeal ATPase SSO1545
(1)
Sulfolobus solfataricus [TaxId: 2287]
(1)
2a
d2fnaa2
A:1-283
2b
d2fnab2
B:0-283
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CATH Domains
(3, 6)
Info
all CATH domains
1a: CATH_2fnaA01 (A:0-207)
1b: CATH_2fnaB01 (B:0-207)
2a: CATH_2fnaA03 (A:284-356)
2b: CATH_2fnaB03 (B:284-356)
3a: CATH_2fnaA02 (A:208-283)
3b: CATH_2fnaB02 (B:208-283)
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)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
P-loop containing nucleotide triphosphate hydrolases
(1378)
Sulfolobus solfataricus p2. Organism_taxid: 273057. Strain: p2.
(4)
1a
2fnaA01
A:0-207
1b
2fnaB01
B:0-207
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Arc Repressor Mutant, subunit A
(1030)
Homologous Superfamily
:
'winged helix' repressor DNA binding domain
(507)
Sulfolobus solfataricus p2. Organism_taxid: 273057. Strain: p2.
(1)
2a
2fnaA03
A:284-356
2b
2fnaB03
B:284-356
Topology
:
Helicase, Ruva Protein; domain 3
(218)
Homologous Superfamily
:
[code=1.10.8.60, no name defined]
(73)
Sulfolobus solfataricus p2. Organism_taxid: 273057. Strain: p2.
(1)
3a
2fnaA02
A:208-283
3b
2fnaB02
B:208-283
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Pfam Domains
(0, 0)
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