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2FJF
Biol. Unit 4
Info
Asym.Unit (801 KB)
Biol.Unit 1 (79 KB)
Biol.Unit 10 (79 KB)
Biol.Unit 11 (79 KB)
Biol.Unit 12 (78 KB)
Biol.Unit 2 (79 KB)
Biol.Unit 3 (79 KB)
Biol.Unit 4 (78 KB)
Biol.Unit 5 (80 KB)
Biol.Unit 6 (79 KB)
Biol.Unit 7 (79 KB)
Biol.Unit 8 (80 KB)
Biol.Unit 9 (78 KB)
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(1)
Title
:
STRUCTURE OF THE G6 FAB, A PHAGE DERIVED VEGF BINDING FAB
Authors
:
C. Wiesmann
Date
:
02 Jan 06 (Deposition) - 07 Feb 06 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.65
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X
Biol. Unit 1: H,L (1x)
Biol. Unit 2: A,B (1x)
Biol. Unit 3: C,D (1x)
Biol. Unit 4: E,F (1x)
Biol. Unit 5: G,I (1x)
Biol. Unit 6: J,K (1x)
Biol. Unit 7: M,N (1x)
Biol. Unit 8: O,P (1x)
Biol. Unit 9: Q,R (1x)
Biol. Unit 10: S,T (1x)
Biol. Unit 11: U,V (1x)
Biol. Unit 12: W,X (1x)
Keywords
:
Antibody, Fab, Dodecamer, Immune System
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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Reference
:
G. Fuh, P. Wu, W. C. Liang, M. Ultsch, C. V. Lee, B. Moffat, C. Wiesmann
Structure-Function Studies Of Two Synthetic Anti-Vascular Endothelial Growth Factor Fabs And Comparison With The Avastin Fab.
J. Biol. Chem. V. 281 6625 2006
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Hetero Components
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Sites
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PROSITE Patterns/Profiles
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Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
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SCOP Domains
(4, 48)
Info
All SCOP Domains
1a: SCOP_d2fjfa1 (A:1-107)
1b: SCOP_d2fjfc1 (C:1-107)
1c: SCOP_d2fjfe1 (E:1-107)
1d: SCOP_d2fjfg1 (G:1-107)
1e: SCOP_d2fjfj1 (J:1-107)
1f: SCOP_d2fjfl1 (L:1-107)
1g: SCOP_d2fjfm1 (M:1-107)
1h: SCOP_d2fjfo1 (O:1-107)
1i: SCOP_d2fjfq1 (Q:1-107)
1j: SCOP_d2fjfs1 (S:1-107)
1k: SCOP_d2fjfu1 (U:1-107)
1l: SCOP_d2fjfw1 (W:1-107)
2a: SCOP_d2fjfa2 (A:108-211)
2b: SCOP_d2fjfc2 (C:108-211)
2c: SCOP_d2fjfe2 (E:108-211)
2d: SCOP_d2fjfg2 (G:108-211)
2e: SCOP_d2fjfj2 (J:108-211)
2f: SCOP_d2fjfl2 (L:108-211)
2g: SCOP_d2fjfm2 (M:108-211)
2h: SCOP_d2fjfo2 (O:108-211)
2i: SCOP_d2fjfq2 (Q:108-211)
2j: SCOP_d2fjfs2 (S:108-211)
2k: SCOP_d2fjfu2 (U:108-211)
2l: SCOP_d2fjfw2 (W:108-211)
3a: SCOP_d2fjfb2 (B:121-223)
3b: SCOP_d2fjfd2 (D:121-223)
3c: SCOP_d2fjff2 (F:121-223)
3d: SCOP_d2fjfh2 (H:121-223)
3e: SCOP_d2fjfi2 (I:121-223)
3f: SCOP_d2fjfk2 (K:121-223)
3g: SCOP_d2fjfn2 (N:121-223)
3h: SCOP_d2fjfp2 (P:121-223)
3i: SCOP_d2fjfr2 (R:121-223)
3j: SCOP_d2fjft2 (T:121-223)
3k: SCOP_d2fjfv2 (V:121-223)
3l: SCOP_d2fjfx2 (X:121-223)
4a: SCOP_d2fjfb1 (B:1-120)
4b: SCOP_d2fjfd1 (D:1-120)
4c: SCOP_d2fjff1 (F:1-120)
4d: SCOP_d2fjfh1 (H:1-120)
4e: SCOP_d2fjfi1 (I:1-120)
4f: SCOP_d2fjfk1 (K:1-120)
4g: SCOP_d2fjfn1 (N:1-120)
4h: SCOP_d2fjfp1 (P:1-120)
4i: SCOP_d2fjfr1 (R:1-120)
4j: SCOP_d2fjft1 (T:1-120)
4k: SCOP_d2fjfv1 (V:1-120)
4l: SCOP_d2fjfx1 (X:1-120)
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)
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)
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Immunoglobulin-like beta-sandwich
(7299)
Superfamily
:
Immunoglobulin
(5995)
Family
:
automated matches
(864)
Protein domain
:
automated matches
(864)
Human (Homo sapiens) [TaxId: 9606]
(448)
1a
d2fjfa1
A:1-107
1b
d2fjfc1
C:1-107
1c
d2fjfe1
E:1-107
1d
d2fjfg1
G:1-107
1e
d2fjfj1
J:1-107
1f
d2fjfl1
L:1-107
1g
d2fjfm1
M:1-107
1h
d2fjfo1
O:1-107
1i
d2fjfq1
Q:1-107
1j
d2fjfs1
S:1-107
1k
d2fjfu1
U:1-107
1l
d2fjfw1
W:1-107
Family
:
C1 set domains (antibody constant domain-like)
(3013)
Protein domain
:
automated matches
(652)
Human (Homo sapiens) [TaxId: 9606]
(334)
2a
d2fjfa2
A:108-211
2b
d2fjfc2
C:108-211
2c
d2fjfe2
E:108-211
2d
d2fjfg2
G:108-211
2e
d2fjfj2
J:108-211
2f
d2fjfl2
L:108-211
2g
d2fjfm2
M:108-211
2h
d2fjfo2
O:108-211
2i
d2fjfq2
Q:108-211
2j
d2fjfs2
S:108-211
2k
d2fjfu2
U:108-211
2l
d2fjfw2
W:108-211
Protein domain
:
Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma
(608)
Human (Homo sapiens) [TaxId: 9606]
(179)
3a
d2fjfb2
B:121-223
3b
d2fjfd2
D:121-223
3c
d2fjff2
F:121-223
3d
d2fjfh2
H:121-223
3e
d2fjfi2
I:121-223
3f
d2fjfk2
K:121-223
3g
d2fjfn2
N:121-223
3h
d2fjfp2
P:121-223
3i
d2fjfr2
R:121-223
3j
d2fjft2
T:121-223
3k
d2fjfv2
V:121-223
3l
d2fjfx2
X:121-223
Family
:
V set domains (antibody variable domain-like)
(1919)
Protein domain
:
Immunoglobulin heavy chain variable domain, VH
(658)
Engineered (including hybrid species)
(68)
4a
d2fjfb1
B:1-120
4b
d2fjfd1
D:1-120
4c
d2fjff1
F:1-120
4d
d2fjfh1
H:1-120
4e
d2fjfi1
I:1-120
4f
d2fjfk1
K:1-120
4g
d2fjfn1
N:1-120
4h
d2fjfp1
P:1-120
4i
d2fjfr1
R:1-120
4j
d2fjft1
T:1-120
4k
d2fjfv1
V:1-120
4l
d2fjfx1
X:1-120
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CATH Domains
(1, 48)
Info
all CATH domains
1a: CATH_2fjfA02 (A:109-211)
1b: CATH_2fjfB02 (B:121-223)
1c: CATH_2fjfD02 (D:121-223)
1d: CATH_2fjfF02 (F:121-223)
1e: CATH_2fjfH02 (H:121-223)
1f: CATH_2fjfI02 (I:121-223)
1g: CATH_2fjfK02 (K:121-223)
1h: CATH_2fjfN02 (N:121-223)
1i: CATH_2fjfP02 (P:121-223)
1j: CATH_2fjfR02 (R:121-223)
1k: CATH_2fjfT02 (T:121-223)
1l: CATH_2fjfV02 (V:121-223)
1m: CATH_2fjfX02 (X:121-223)
1n: CATH_2fjfB01 (B:1-120)
1o: CATH_2fjfD01 (D:1-120)
1p: CATH_2fjfF01 (F:1-120)
1q: CATH_2fjfH01 (H:1-120)
1r: CATH_2fjfI01 (I:1-120)
1s: CATH_2fjfK01 (K:1-120)
1t: CATH_2fjfN01 (N:1-120)
1u: CATH_2fjfP01 (P:1-120)
1v: CATH_2fjfR01 (R:1-120)
1w: CATH_2fjfT01 (T:1-120)
1x: CATH_2fjfV01 (V:1-120)
1y: CATH_2fjfX01 (X:1-120)
1z: CATH_2fjfC02 (C:109-211)
1aa: CATH_2fjfE02 (E:109-211)
1ab: CATH_2fjfG02 (G:109-211)
1ac: CATH_2fjfJ02 (J:109-211)
1ad: CATH_2fjfL02 (L:109-211)
1ae: CATH_2fjfM02 (M:109-211)
1af: CATH_2fjfO02 (O:109-211)
1ag: CATH_2fjfQ02 (Q:109-211)
1ah: CATH_2fjfS02 (S:109-211)
1ai: CATH_2fjfU02 (U:109-211)
1aj: CATH_2fjfW02 (W:109-211)
1ak: CATH_2fjfA01 (A:1-108)
1al: CATH_2fjfC01 (C:1-108)
1am: CATH_2fjfE01 (E:1-108)
1an: CATH_2fjfG01 (G:1-108)
1ao: CATH_2fjfJ01 (J:1-108)
1ap: CATH_2fjfL01 (L:1-108)
1aq: CATH_2fjfM01 (M:1-108)
1ar: CATH_2fjfO01 (O:1-108)
1as: CATH_2fjfQ01 (Q:1-108)
1at: CATH_2fjfS01 (S:1-108)
1au: CATH_2fjfU01 (U:1-108)
1av: CATH_2fjfW01 (W:1-108)
View:
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Classes
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)
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)
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(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Immunoglobulin-like
(3897)
Homologous Superfamily
:
Immunoglobulins
(2282)
Human (Homo sapiens)
(912)
1a
2fjfA02
A:109-211
1b
2fjfB02
B:121-223
1c
2fjfD02
D:121-223
1d
2fjfF02
F:121-223
1e
2fjfH02
H:121-223
1f
2fjfI02
I:121-223
1g
2fjfK02
K:121-223
1h
2fjfN02
N:121-223
1i
2fjfP02
P:121-223
1j
2fjfR02
R:121-223
1k
2fjfT02
T:121-223
1l
2fjfV02
V:121-223
1m
2fjfX02
X:121-223
1n
2fjfB01
B:1-120
1o
2fjfD01
D:1-120
1p
2fjfF01
F:1-120
1q
2fjfH01
H:1-120
1r
2fjfI01
I:1-120
1s
2fjfK01
K:1-120
1t
2fjfN01
N:1-120
1u
2fjfP01
P:1-120
1v
2fjfR01
R:1-120
1w
2fjfT01
T:1-120
1x
2fjfV01
V:1-120
1y
2fjfX01
X:1-120
1z
2fjfC02
C:109-211
1aa
2fjfE02
E:109-211
1ab
2fjfG02
G:109-211
1ac
2fjfJ02
J:109-211
1ad
2fjfL02
L:109-211
1ae
2fjfM02
M:109-211
1af
2fjfO02
O:109-211
1ag
2fjfQ02
Q:109-211
1ah
2fjfS02
S:109-211
1ai
2fjfU02
U:109-211
1aj
2fjfW02
W:109-211
1ak
2fjfA01
A:1-108
1al
2fjfC01
C:1-108
1am
2fjfE01
E:1-108
1an
2fjfG01
G:1-108
1ao
2fjfJ01
J:1-108
1ap
2fjfL01
L:1-108
1aq
2fjfM01
M:1-108
1ar
2fjfO01
O:1-108
1as
2fjfQ01
Q:1-108
1at
2fjfS01
S:1-108
1au
2fjfU01
U:1-108
1av
2fjfW01
W:1-108
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Pfam Domains
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Asym.Unit (801 KB)
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Biol.Unit 1 (79 KB)
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Biol.Unit 10 (79 KB)
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Biol.Unit 11 (79 KB)
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Biol.Unit 12 (78 KB)
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