PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
Getting 'PROSITE' information from database.
2FG4
Biol. Unit 1
Info
Asym.Unit (39 KB)
Biol.Unit 1 (748 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
(1)
Title
:
STRUCTURE OF HUMAN FERRITIN L CHAIN
Authors
:
Z. Wang, C. Li, M. Ellenburg, J. Ruble, J. X. Ho, D. C. Carter
Date
:
21 Dec 05 (Deposition) - 04 Jul 06 (Release) - 16 Nov 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.10
Chains
:
Asym. Unit : A
Biol. Unit 1: A (24x)
Keywords
:
Human Light Chain Ferritin, Metal Binding Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Z. Wang, C. Li, M. Ellenburg, E. Soistman, J. Ruble, B. Wright, J. X. Ho, D. C. Carter
Structure Of Human Ferritin L Chain.
Acta Crystallogr. , Sect. D V. 62 800 2006
[
close entry info
]
Hetero Components
(0, 0)
Info
All Hetero Components
1a: CADMIUM ION (CDa)
1b: CADMIUM ION (CDb)
1c: CADMIUM ION (CDc)
1d: CADMIUM ION (CDd)
1e: CADMIUM ION (CDe)
1f: CADMIUM ION (CDf)
1g: CADMIUM ION (CDg)
1h: CADMIUM ION (CDh)
1i: CADMIUM ION (CDi)
1j: CADMIUM ION (CDj)
1k: CADMIUM ION (CDk)
1l: CADMIUM ION (CDl)
1m: CADMIUM ION (CDm)
View:
Select:
Label:
Sorry, no Info available
[
close Hetero component info
]
Sites
(13, 13)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASP A:131 , HOH A:394
BINDING SITE FOR RESIDUE CD A 191
02
AC2
SOFTWARE
ASP A:15
BINDING SITE FOR RESIDUE CD A 192
03
AC3
SOFTWARE
CD A:202 , CD A:204 , HOH A:397
BINDING SITE FOR RESIDUE CD A 201
04
AC4
SOFTWARE
HIS A:118 , SER A:122 , CYS A:130 , GLU A:134 , CD A:201 , HOH A:395 , HOH A:396 , HOH A:397
BINDING SITE FOR RESIDUE CD A 202
05
AC5
SOFTWARE
HIS A:136 , CD A:210
BINDING SITE FOR RESIDUE CD A 203
06
AC6
SOFTWARE
CYS A:130 , GLU A:134 , CD A:201 , HOH A:397
BINDING SITE FOR RESIDUE CD A 204
07
AC7
SOFTWARE
GLU A:60
BINDING SITE FOR RESIDUE CD A 205
08
AC8
SOFTWARE
GLU A:61 , GLU A:64 , CD A:207 , HOH A:301
BINDING SITE FOR RESIDUE CD A 206
09
AC9
SOFTWARE
GLU A:61 , GLU A:140 , CD A:206 , HOH A:301
BINDING SITE FOR RESIDUE CD A 207
10
BC1
SOFTWARE
HOH A:341
BINDING SITE FOR RESIDUE CD A 208
11
BC2
SOFTWARE
GLU A:90
BINDING SITE FOR RESIDUE CD A 209
12
BC3
SOFTWARE
HIS A:136 , ASP A:139 , CD A:203 , HOH A:384
BINDING SITE FOR RESIDUE CD A 210
13
BC4
SOFTWARE
HIS A:53 , GLU A:57
BINDING SITE FOR RESIDUE CD A 211
[
close Site info
]
SAPs(SNPs)/Variants
(2, 48)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
1: VAR_070948 (T33I, chain A, )
2: VAR_026633 (A99T, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_070948
T
30
I
FRIL_HUMAN
Disease (HHCS)
---
A
T
33
I
2
UniProt
VAR_026633
A
96
T
FRIL_HUMAN
Disease (NBIA3)
---
A
A
99
T
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(3, 72)
Info
All PROSITE Patterns/Profiles
1: FERRITIN_LIKE (A:10-159)
2: FERRITIN_1 (A:61-79)
3: FERRITIN_2 (A:126-146)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
FERRITIN_LIKE
PS50905
Ferritin-like diiron domain profile.
FRIL_HUMAN
7-156
24
A:10-159
2
FERRITIN_1
PS00540
Ferritin iron-binding regions signature 1.
FRIL_HUMAN
58-76
24
A:61-79
3
FERRITIN_2
PS00204
Ferritin iron-binding regions signature 2.
FRIL_HUMAN
123-143
24
A:126-146
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
View:
Select:
Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d2fg4a_ (A:)
View:
Select:
Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
Ferritin-like
(533)
Superfamily
:
Ferritin-like
(489)
Family
:
Ferritin
(232)
Protein domain
:
(Apo)ferritin
(68)
Human (Homo sapiens) [TaxId: 9606]
(7)
1a
d2fg4a_
A:
[
close SCOP info
]
CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_2fg4A00 (A:5-175)
View:
Select:
Label:
Classes
(
)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Up-down Bundle
(3216)
Topology
:
Ferritin;
(180)
Homologous Superfamily
:
[code=1.20.1260.10, no name defined]
(180)
Human (Homo sapiens)
(16)
1a
2fg4A00
A:5-175
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Asymmetric Unit 1
Asymmetric Unit 2
Asymmetric Unit 3
Asymmetric Unit 4
Asymmetric Unit 5
Asymmetric Unit 6
Asymmetric Unit 7
Asymmetric Unit 8
Asymmetric Unit 9
Asymmetric Unit 10
Asymmetric Unit 11
Asymmetric Unit 12
Asymmetric Unit 13
Asymmetric Unit 14
Asymmetric Unit 15
Asymmetric Unit 16
Asymmetric Unit 17
Asymmetric Unit 18
Asymmetric Unit 19
Asymmetric Unit 20
Asymmetric Unit 21
Asymmetric Unit 22
Asymmetric Unit 23
Asymmetric Unit 24
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (39 KB)
Header - Asym.Unit
Biol.Unit 1 (748 KB)
Header - Biol.Unit 1
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
2FG4
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help