PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
No precomputed SNP/Variant structure found.
Calculating the structure may take several minutes.
PLEASE WAIT...
Getting 'PROSITE' information from database.
2FBW
Biol. Unit 2
Info
Asym.Unit (409 KB)
Biol.Unit 1 (203 KB)
Biol.Unit 2 (203 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
(1)
Title
:
AVIAN RESPIRATORY COMPLEX II WITH CARBOXIN BOUND
Authors
:
L. S. Huang, G. Sun, D. Cobessi, A. C. Wang, J. T. Shen, E. Y. Tung, V. E. And E. A. Berry
Date
:
10 Dec 05 (Deposition) - 20 Dec 05 (Release) - 29 Oct 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.10
Chains
:
Asym. Unit : A,B,C,D,N,O,P,Q
Biol. Unit 1: A,B,C,D (1x)
Biol. Unit 2: N,O,P,Q (1x)
Keywords
:
Complex Ii, Membrane Protein, Heme Protein, Iron Sulfur Protein, Cytochrome B, Oxidoreductase, Redox Enzyme, Respiratory Chain, Oxaloacetate Nitropropionate Ubiquinone
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
L. S. Huang, G. Sun, D. Cobessi, A. C. Wang, J. T. Shen, E. Y. Tung, V. E. Anderson, E. A. Berry
3-Nitropropionic Acid Is A Suicide Inhibitor Of Mitochondrial Respiration That, Upon Oxidation By Complex Ii, Forms A Covalent Adduct With A Catalytic Base Arginine In The Active Site Of The Enzyme.
J. Biol. Chem. V. 281 5965 2006
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(11, 51)
Info
All Hetero Components
01a: AZIDE ION (AZIa)
02a: 2-HEXYLOXY-6-HYDROXYMETHYL-TETRAHY... (BHGa)
02b: 2-HEXYLOXY-6-HYDROXYMETHYL-TETRAHY... (BHGb)
03a: 2-METHYL-N-PHENYL-5,6-DIHYDRO-1,4-... (CBEa)
03b: 2-METHYL-N-PHENYL-5,6-DIHYDRO-1,4-... (CBEb)
04a: FE3-S4 CLUSTER (F3Sa)
04b: FE3-S4 CLUSTER (F3Sb)
05a: FLAVIN-ADENINE DINUCLEOTIDE (FADa)
05b: FLAVIN-ADENINE DINUCLEOTIDE (FADb)
06a: FE2/S2 (INORGANIC) CLUSTER (FESa)
06b: FE2/S2 (INORGANIC) CLUSTER (FESb)
07a: GLYCEROL (GOLa)
07b: GLYCEROL (GOLb)
07c: GLYCEROL (GOLc)
07d: GLYCEROL (GOLd)
08a: PROTOPORPHYRIN IX CONTAINING FE (HEMa)
08b: PROTOPORPHYRIN IX CONTAINING FE (HEMb)
09a: POTASSIUM ION (Ka)
09b: POTASSIUM ION (Kb)
09c: POTASSIUM ION (Kc)
09d: POTASSIUM ION (Kd)
10a: 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOE... (PEEa)
10b: 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOE... (PEEb)
11a: IRON/SULFUR CLUSTER (SF4a)
11b: IRON/SULFUR CLUSTER (SF4b)
12a: MALATE LIKE INTERMEDIATE (TEOa)
12b: MALATE LIKE INTERMEDIATE (TEOb)
13a: UNKNOWN LIGAND (UNLa)
13aa: UNKNOWN LIGAND (UNLaa)
13ab: UNKNOWN LIGAND (UNLab)
13ac: UNKNOWN LIGAND (UNLac)
13ad: UNKNOWN LIGAND (UNLad)
13ae: UNKNOWN LIGAND (UNLae)
13af: UNKNOWN LIGAND (UNLaf)
13ag: UNKNOWN LIGAND (UNLag)
13ah: UNKNOWN LIGAND (UNLah)
13ai: UNKNOWN LIGAND (UNLai)
13aj: UNKNOWN LIGAND (UNLaj)
13ak: UNKNOWN LIGAND (UNLak)
13al: UNKNOWN LIGAND (UNLal)
13am: UNKNOWN LIGAND (UNLam)
13an: UNKNOWN LIGAND (UNLan)
13ao: UNKNOWN LIGAND (UNLao)
13ap: UNKNOWN LIGAND (UNLap)
13aq: UNKNOWN LIGAND (UNLaq)
13ar: UNKNOWN LIGAND (UNLar)
13as: UNKNOWN LIGAND (UNLas)
13at: UNKNOWN LIGAND (UNLat)
13au: UNKNOWN LIGAND (UNLau)
13av: UNKNOWN LIGAND (UNLav)
13aw: UNKNOWN LIGAND (UNLaw)
13ax: UNKNOWN LIGAND (UNLax)
13ay: UNKNOWN LIGAND (UNLay)
13az: UNKNOWN LIGAND (UNLaz)
13b: UNKNOWN LIGAND (UNLb)
13ba: UNKNOWN LIGAND (UNLba)
13bb: UNKNOWN LIGAND (UNLbb)
13bc: UNKNOWN LIGAND (UNLbc)
13bd: UNKNOWN LIGAND (UNLbd)
13be: UNKNOWN LIGAND (UNLbe)
13bf: UNKNOWN LIGAND (UNLbf)
13bg: UNKNOWN LIGAND (UNLbg)
13bh: UNKNOWN LIGAND (UNLbh)
13bi: UNKNOWN LIGAND (UNLbi)
13bj: UNKNOWN LIGAND (UNLbj)
13bk: UNKNOWN LIGAND (UNLbk)
13bl: UNKNOWN LIGAND (UNLbl)
13bm: UNKNOWN LIGAND (UNLbm)
13bn: UNKNOWN LIGAND (UNLbn)
13bo: UNKNOWN LIGAND (UNLbo)
13bp: UNKNOWN LIGAND (UNLbp)
13bq: UNKNOWN LIGAND (UNLbq)
13br: UNKNOWN LIGAND (UNLbr)
13bs: UNKNOWN LIGAND (UNLbs)
13bt: UNKNOWN LIGAND (UNLbt)
13bu: UNKNOWN LIGAND (UNLbu)
13bv: UNKNOWN LIGAND (UNLbv)
13bw: UNKNOWN LIGAND (UNLbw)
13bx: UNKNOWN LIGAND (UNLbx)
13by: UNKNOWN LIGAND (UNLby)
13bz: UNKNOWN LIGAND (UNLbz)
13c: UNKNOWN LIGAND (UNLc)
13ca: UNKNOWN LIGAND (UNLca)
13cb: UNKNOWN LIGAND (UNLcb)
13cc: UNKNOWN LIGAND (UNLcc)
13cd: UNKNOWN LIGAND (UNLcd)
13ce: UNKNOWN LIGAND (UNLce)
13cf: UNKNOWN LIGAND (UNLcf)
13cg: UNKNOWN LIGAND (UNLcg)
13ch: UNKNOWN LIGAND (UNLch)
13ci: UNKNOWN LIGAND (UNLci)
13cj: UNKNOWN LIGAND (UNLcj)
13ck: UNKNOWN LIGAND (UNLck)
13cl: UNKNOWN LIGAND (UNLcl)
13cm: UNKNOWN LIGAND (UNLcm)
13cn: UNKNOWN LIGAND (UNLcn)
13co: UNKNOWN LIGAND (UNLco)
13cp: UNKNOWN LIGAND (UNLcp)
13cq: UNKNOWN LIGAND (UNLcq)
13d: UNKNOWN LIGAND (UNLd)
13e: UNKNOWN LIGAND (UNLe)
13f: UNKNOWN LIGAND (UNLf)
13g: UNKNOWN LIGAND (UNLg)
13h: UNKNOWN LIGAND (UNLh)
13i: UNKNOWN LIGAND (UNLi)
13j: UNKNOWN LIGAND (UNLj)
13k: UNKNOWN LIGAND (UNLk)
13l: UNKNOWN LIGAND (UNLl)
13m: UNKNOWN LIGAND (UNLm)
13n: UNKNOWN LIGAND (UNLn)
13o: UNKNOWN LIGAND (UNLo)
13p: UNKNOWN LIGAND (UNLp)
13q: UNKNOWN LIGAND (UNLq)
13r: UNKNOWN LIGAND (UNLr)
13s: UNKNOWN LIGAND (UNLs)
13t: UNKNOWN LIGAND (UNLt)
13u: UNKNOWN LIGAND (UNLu)
13v: UNKNOWN LIGAND (UNLv)
13w: UNKNOWN LIGAND (UNLw)
13x: UNKNOWN LIGAND (UNLx)
13y: UNKNOWN LIGAND (UNLy)
13z: UNKNOWN LIGAND (UNLz)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
AZI
-1
Ligand/Ion
AZIDE ION
2
BHG
1
Ligand/Ion
2-HEXYLOXY-6-HYDROXYMETHYL-TETRAHYDRO-PYRAN-3,4,5-TRIOL
3
CBE
1
Ligand/Ion
2-METHYL-N-PHENYL-5,6-DIHYDRO-1,4-OXATHIINE-3-CARBOXAMIDE
4
F3S
1
Ligand/Ion
FE3-S4 CLUSTER
5
FAD
1
Ligand/Ion
FLAVIN-ADENINE DINUCLEOTIDE
6
FES
1
Ligand/Ion
FE2/S2 (INORGANIC) CLUSTER
7
GOL
2
Ligand/Ion
GLYCEROL
8
HEM
1
Ligand/Ion
PROTOPORPHYRIN IX CONTAINING FE
9
K
-1
Ligand/Ion
POTASSIUM ION
10
PEE
1
Ligand/Ion
1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOETHANOLAMINE
11
SF4
1
Ligand/Ion
IRON/SULFUR CLUSTER
12
TEO
1
Ligand/Ion
MALATE LIKE INTERMEDIATE
13
UNL
40
Ligand/Ion
UNKNOWN LIGAND
[
close Hetero Component info
]
Sites
(29, 29)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC5 (SOFTWARE)
04: AC6 (SOFTWARE)
05: BC3 (SOFTWARE)
06: BC4 (SOFTWARE)
07: BC5 (SOFTWARE)
08: BC6 (SOFTWARE)
09: CC3 (SOFTWARE)
10: CC4 (SOFTWARE)
11: CC5 (SOFTWARE)
12: CC6 (SOFTWARE)
13: CC7 (SOFTWARE)
14: CC8 (SOFTWARE)
15: CC9 (SOFTWARE)
16: DC1 (SOFTWARE)
17: DC5 (SOFTWARE)
18: DC6 (SOFTWARE)
19: DC7 (SOFTWARE)
20: DC8 (SOFTWARE)
21: DC9 (SOFTWARE)
22: FC6 (SOFTWARE)
23: FC8 (SOFTWARE)
24: FC9 (SOFTWARE)
25: GC1 (SOFTWARE)
26: GC2 (SOFTWARE)
27: GC5 (SOFTWARE)
28: GC9 (SOFTWARE)
29: HC1 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
LYS C:31 , TRP C:32 , SER C:33 , LEU C:34 , PRO C:35 , GLU C:120 , UNL C:289 , HOH C:1750 , HOH C:2605 , TYR P:85
BINDING SITE FOR RESIDUE BHG C 142
02
AC2
SOFTWARE
ALA C:139 , TRP P:32 , LEU P:34 , PRO P:35 , GLU P:120 , HOH P:1172 , HOH P:2485 , HOH P:2548
BINDING SITE FOR RESIDUE BHG P 204
03
AC5
SOFTWARE
TYR N:365 , ASN N:366 , MET N:367 , GLY N:368 , GLU N:397 , ALA N:399
BINDING SITE FOR RESIDUE K N 622
04
AC6
SOFTWARE
MET O:191 , ASP O:193 , ASP O:196 , THR O:199 , HOH O:1041
BINDING SITE FOR RESIDUE K O 253
05
BC3
SOFTWARE
GLY N:25 , ALA N:26 , GLY N:27 , GLY N:28 , ALA N:29 , THR N:48 , LYS N:49 , LEU N:50 , SER N:55 , HIS N:56 , THR N:57 , ALA N:59 , ALA N:60 , GLN N:61 , GLY N:62 , GLY N:63 , TYR N:176 , PHE N:177 , ALA N:178 , ALA N:212 , THR N:213 , THR N:224 , ASP N:232 , LEU N:263 , HIS N:364 , TYR N:365 , GLY N:396 , GLU N:397 , ARG N:408 , ALA N:411 , ASN N:412 , SER N:413 , LEU N:414 , LEU N:417 , TEO N:1002 , HOH N:1026 , HOH N:1038 , HOH N:1051 , HOH N:1054 , HOH N:1133
BINDING SITE FOR RESIDUE FAD N 1001
06
BC4
SOFTWARE
SER O:64 , CYS O:65 , ARG O:66 , GLY O:68 , CYS O:70 , GLY O:71 , CYS O:73 , CYS O:85
BINDING SITE FOR RESIDUE FES O 1002
07
BC5
SOFTWARE
CYS O:158 , ILE O:159 , CYS O:161 , ALA O:162 , CYS O:164 , ALA O:182 , CYS O:225 , PRO O:226
BINDING SITE FOR RESIDUE SF4 O 1003
08
BC6
SOFTWARE
CYS O:168 , TYR O:178 , CYS O:215 , HIS O:216 , THR O:217 , ILE O:218 , MET O:219 , ASN O:220 , CYS O:221 , ILE O:235
BINDING SITE FOR RESIDUE F3S O 1004
09
CC3
SOFTWARE
HOH O:1079 , HIS P:42 , ARG P:43 , GLY P:46 , LEU P:49 , SER P:50 , HIS P:98 , THR P:99 , GLY P:102 , HIS P:105 , HOH P:1002 , HOH P:1199 , ARG Q:14 , LEU Q:20 , LEU Q:43 , HIS Q:46 , GLY Q:50
BINDING SITE FOR RESIDUE HEM P 201
10
CC4
SOFTWARE
PRO O:169 , TRP O:173 , HIS O:216 , ILE O:218 , ILE P:27 , TRP P:32 , MET P:36 , SER P:39 , ILE P:40 , ARG P:43 , HOH P:1004 , TYR Q:58
BINDING SITE FOR RESIDUE CBE P 202
11
CC5
SOFTWARE
GLY N:62 , HIS N:253 , LEU N:263 , THR N:265 , GLU N:266 , ARG N:297 , HIS N:364 , ARG N:408 , GLY N:410 , ALA N:411 , FAD N:1001
BINDING SITE FOR RESIDUE TEO N 1002
12
CC6
SOFTWARE
SER P:141 , GOL P:208 , UNL P:211 , ALA Q:27 , VAL Q:97 , TRP Q:101
BINDING SITE FOR RESIDUE PEE Q 210
13
CC7
SOFTWARE
GOL P:208 , PEE Q:210
BINDING SITE FOR RESIDUE UNL P 211
14
CC8
SOFTWARE
GLN N:11 , TYR N:12 , GLN N:136 , ARG N:457
BINDING SITE FOR RESIDUE UNL N 1003
15
CC9
SOFTWARE
ASP O:176 , TRP P:13
BINDING SITE FOR RESIDUE UNL O 1005
16
DC1
SOFTWARE
TYR C:85 , HOH C:2876 , LEU P:127
BINDING SITE FOR RESIDUE UNL C 214
17
DC5
SOFTWARE
GLN N:11
BINDING SITE FOR RESIDUE UNL N 1006
18
DC6
SOFTWARE
GLN P:118
BINDING SITE FOR RESIDUE UNL P 224
19
DC7
SOFTWARE
GLU N:608
BINDING SITE FOR RESIDUE UNL N 1007
20
DC8
SOFTWARE
TYR N:258
BINDING SITE FOR RESIDUE UNL N 1011
21
DC9
SOFTWARE
PHE O:210
BINDING SITE FOR RESIDUE UNL O 1008
22
FC6
SOFTWARE
TYR Q:73
BINDING SITE FOR RESIDUE UNL Q 288
23
FC8
SOFTWARE
PHE N:137 , SER N:612
BINDING SITE FOR RESIDUE UNL N 1017
24
FC9
SOFTWARE
GLU N:491
BINDING SITE FOR RESIDUE UNL N 1019
25
GC1
SOFTWARE
GLU N:18 , HOH N:1566
BINDING SITE FOR RESIDUE UNL N 1020
26
GC2
SOFTWARE
LYS N:474
BINDING SITE FOR RESIDUE UNL N 1021
27
GC5
SOFTWARE
LYS N:474
BINDING SITE FOR RESIDUE UNL N 1022
28
GC9
SOFTWARE
HIS O:104 , MET O:105 , GLY O:175 , HOH O:1039 , HOH O:1047 , HOH O:1055 , HOH O:1099 , HOH O:1156 , PHE P:12 , TRP P:13
BINDING SITE FOR RESIDUE GOL O 1009
29
HC1
SOFTWARE
LEU P:91 , UNL P:211 , PEE Q:210
BINDING SITE FOR RESIDUE GOL P 208
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(5, 5)
Info
All PROSITE Patterns/Profiles
1: 2FE2S_FER_2 (O:12-105)
2: FRD_SDH_FAD_BINDING (N:54-63)
3: 2FE2S_FER_1 (O:65-73)
4: 4FE4S_FER_2 (O:148-178)
5: 4FE4S_FER_1 (O:158-169)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
2FE2S_FER_2
PS51085
2Fe-2S ferredoxin-type iron-sulfur binding domain profile.
SDHB_CHICK
50-143
1
-
O:12-105
2
FRD_SDH_FAD_BINDING
PS00504
Fumarate reductase / succinate dehydrogenase FAD-binding site.
SDHA_CHICK
98-107
1
-
N:54-63
3
2FE2S_FER_1
PS00197
2Fe-2S ferredoxin-type iron-sulfur binding region signature.
SDHB_CHICK
103-111
1
-
O:65-73
4
4FE4S_FER_2
PS51379
4Fe-4S ferredoxin-type iron-sulfur binding domain profile.
SDHB_CHICK
186-216
1
-
O:148-178
5
4FE4S_FER_1
PS00198
4Fe-4S ferredoxin-type iron-sulfur binding region signature.
SDHB_CHICK
196-207
1
-
O:158-169
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
View:
Select:
Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(3, 8)
Info
All SCOP Domains
1a: SCOP_d2fbwb2 (B:115-246)
1b: SCOP_d2fbwo2 (O:115-246)
2a: SCOP_d2fbwb1 (B:8-114)
2b: SCOP_d2fbwo1 (O:8-114)
3a: SCOP_d2fbwc_ (C:)
3b: SCOP_d2fbwd_ (D:)
3c: SCOP_d2fbwp_ (P:)
3d: SCOP_d2fbwq_ (Q:)
View:
Select:
Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
Globin-like
(1351)
Superfamily
:
alpha-helical ferredoxin
(43)
Family
:
Fumarate reductase/Succinate dehydogenase iron-sulfur protein, C-terminal domain
(35)
Protein domain
:
Succinate dehydogenase
(16)
Chicken (Gallus gallus) [TaxId: 9031]
(6)
1a
d2fbwb2
B:115-246
1b
d2fbwo2
O:115-246
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
beta-Grasp (ubiquitin-like)
(1032)
Superfamily
:
2Fe-2S ferredoxin-like
(174)
Family
:
2Fe-2S ferredoxin domains from multidomain proteins
(82)
Protein domain
:
Succinate dehydogenase iron-sulfur protein, N-terminal domain
(16)
Chicken (Gallus gallus) [TaxId: 9031]
(6)
2a
d2fbwb1
B:8-114
2b
d2fbwo1
O:8-114
Class
:
Membrane and cell surface proteins and peptides
(2046)
Fold
:
Heme-binding four-helical bundle
(113)
Superfamily
:
Fumarate reductase respiratory complex transmembrane subunits
(55)
Family
:
Succinate dehydrogenase/Fumarate reductase transmembrane subunits (SdhC/FrdC and SdhD/FrdD)
(48)
Protein domain
:
automated matches
(11)
Chicken (Gallus gallus) [TaxId: 9031]
(6)
3a
d2fbwc_
C:
3b
d2fbwd_
D:
3c
d2fbwp_
P:
3d
d2fbwq_
Q:
[
close SCOP info
]
CATH Domains
(7, 16)
Info
all CATH domains
1a: CATH_2fbwN01 (N:10-256,N:361-439)
1b: CATH_2fbwA01 (A:9-256,A:361-439)
2a: CATH_2fbwB01 (B:8-114)
2b: CATH_2fbwO01 (O:8-114)
3a: CATH_2fbwA04 (A:557-621)
3b: CATH_2fbwN04 (N:557-621)
4a: CATH_2fbwB02 (B:115-246)
4b: CATH_2fbwO02 (O:115-246)
5a: CATH_2fbwC02 (C:33-141)
5b: CATH_2fbwD00 (D:3-103)
5c: CATH_2fbwQ00 (Q:3-103)
5d: CATH_2fbwP02 (P:33-141)
6a: CATH_2fbwA03 (A:440-556)
6b: CATH_2fbwN03 (N:440-556)
7a: CATH_2fbwC01 (C:2-32)
7b: CATH_2fbwP01 (P:2-32)
View:
Select:
Label:
Classes
(
)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(bba) Sandwich
(528)
Topology
:
FAD/NAD(P)-binding domain
(373)
Homologous Superfamily
:
[code=3.50.50.60, no name defined]
(373)
Chicken (Gallus gallus)
(6)
1a
2fbwN01
N:10-256,N:361-439
1b
2fbwA01
A:9-256,A:361-439
Architecture
:
Roll
(3276)
Topology
:
Ubiquitin-like (UB roll)
(674)
Homologous Superfamily
:
[code=3.10.20.30, no name defined]
(153)
Chicken (Gallus gallus)
(6)
2a
2fbwB01
B:8-114
2b
2fbwO01
O:8-114
Class
:
Few Secondary Structures
(1120)
Architecture
:
Irregular
(1120)
Topology
:
Rhinovirus 14, subunit 4
(101)
Homologous Superfamily
:
succinate dehydrogenase protein domain
(23)
Chicken (Gallus gallus)
(6)
3a
2fbwA04
A:557-621
3b
2fbwN04
N:557-621
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Fumarate Reductase Iron-sulfur Protein; Chain B, domain 2
(33)
Homologous Superfamily
:
Fumarate Reductase Iron-sulfur Protein; Chain B, domain 2
(33)
Chicken (Gallus gallus)
(6)
4a
2fbwB02
B:115-246
4b
2fbwO02
O:115-246
Architecture
:
Up-down Bundle
(3216)
Topology
:
3 helical TM bundles of succinate and fumarate reductases
(23)
Homologous Superfamily
:
Fumarate reductase respiratory complex transmembrane subunits
(23)
Chicken (Gallus gallus)
(6)
5a
2fbwC02
C:33-141
5b
2fbwD00
D:3-103
5c
2fbwQ00
Q:3-103
5d
2fbwP02
P:33-141
Topology
:
Methane Monooxygenase Hydroxylase; Chain G, domain 1
(192)
Homologous Superfamily
:
[code=1.20.58.100, no name defined]
(37)
Chicken (Gallus gallus)
(6)
6a
2fbwA03
A:440-556
6b
2fbwN03
N:440-556
Topology
:
Single alpha-helices involved in coiled-coils or other helix-helix interfaces
(552)
Homologous Superfamily
:
Single helix bin
(17)
Chicken (Gallus gallus)
(8)
7a
2fbwC01
C:2-32
7b
2fbwP01
P:2-32
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain N
Chain O
Chain P
Chain Q
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (409 KB)
Header - Asym.Unit
Biol.Unit 1 (203 KB)
Header - Biol.Unit 1
Biol.Unit 2 (203 KB)
Header - Biol.Unit 2
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
2FBW
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help