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2FBW
Asym. Unit
Info
Asym.Unit (409 KB)
Biol.Unit 1 (203 KB)
Biol.Unit 2 (203 KB)
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(1)
Title
:
AVIAN RESPIRATORY COMPLEX II WITH CARBOXIN BOUND
Authors
:
L. S. Huang, G. Sun, D. Cobessi, A. C. Wang, J. T. Shen, E. Y. Tung, V. E. And E. A. Berry
Date
:
10 Dec 05 (Deposition) - 20 Dec 05 (Release) - 29 Oct 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.10
Chains
:
Asym. Unit : A,B,C,D,N,O,P,Q
Biol. Unit 1: A,B,C,D (1x)
Biol. Unit 2: N,O,P,Q (1x)
Keywords
:
Complex Ii, Membrane Protein, Heme Protein, Iron Sulfur Protein, Cytochrome B, Oxidoreductase, Redox Enzyme, Respiratory Chain, Oxaloacetate Nitropropionate Ubiquinone
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
L. S. Huang, G. Sun, D. Cobessi, A. C. Wang, J. T. Shen, E. Y. Tung, V. E. Anderson, E. A. Berry
3-Nitropropionic Acid Is A Suicide Inhibitor Of Mitochondrial Respiration That, Upon Oxidation By Complex Ii, Forms A Covalent Adduct With A Catalytic Base Arginine In The Active Site Of The Enzyme.
J. Biol. Chem. V. 281 5965 2006
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(13, 122)
Info
All Hetero Components
01a: AZIDE ION (AZIa)
02a: 2-HEXYLOXY-6-HYDROXYMETHYL-TETRAHY... (BHGa)
02b: 2-HEXYLOXY-6-HYDROXYMETHYL-TETRAHY... (BHGb)
03a: 2-METHYL-N-PHENYL-5,6-DIHYDRO-1,4-... (CBEa)
03b: 2-METHYL-N-PHENYL-5,6-DIHYDRO-1,4-... (CBEb)
04a: FE3-S4 CLUSTER (F3Sa)
04b: FE3-S4 CLUSTER (F3Sb)
05a: FLAVIN-ADENINE DINUCLEOTIDE (FADa)
05b: FLAVIN-ADENINE DINUCLEOTIDE (FADb)
06a: FE2/S2 (INORGANIC) CLUSTER (FESa)
06b: FE2/S2 (INORGANIC) CLUSTER (FESb)
07a: GLYCEROL (GOLa)
07b: GLYCEROL (GOLb)
07c: GLYCEROL (GOLc)
07d: GLYCEROL (GOLd)
08a: PROTOPORPHYRIN IX CONTAINING FE (HEMa)
08b: PROTOPORPHYRIN IX CONTAINING FE (HEMb)
09a: POTASSIUM ION (Ka)
09b: POTASSIUM ION (Kb)
09c: POTASSIUM ION (Kc)
09d: POTASSIUM ION (Kd)
10a: 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOE... (PEEa)
10b: 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOE... (PEEb)
11a: IRON/SULFUR CLUSTER (SF4a)
11b: IRON/SULFUR CLUSTER (SF4b)
12a: MALATE LIKE INTERMEDIATE (TEOa)
12b: MALATE LIKE INTERMEDIATE (TEOb)
13a: UNKNOWN LIGAND (UNLa)
13aa: UNKNOWN LIGAND (UNLaa)
13ab: UNKNOWN LIGAND (UNLab)
13ac: UNKNOWN LIGAND (UNLac)
13ad: UNKNOWN LIGAND (UNLad)
13ae: UNKNOWN LIGAND (UNLae)
13af: UNKNOWN LIGAND (UNLaf)
13ag: UNKNOWN LIGAND (UNLag)
13ah: UNKNOWN LIGAND (UNLah)
13ai: UNKNOWN LIGAND (UNLai)
13aj: UNKNOWN LIGAND (UNLaj)
13ak: UNKNOWN LIGAND (UNLak)
13al: UNKNOWN LIGAND (UNLal)
13am: UNKNOWN LIGAND (UNLam)
13an: UNKNOWN LIGAND (UNLan)
13ao: UNKNOWN LIGAND (UNLao)
13ap: UNKNOWN LIGAND (UNLap)
13aq: UNKNOWN LIGAND (UNLaq)
13ar: UNKNOWN LIGAND (UNLar)
13as: UNKNOWN LIGAND (UNLas)
13at: UNKNOWN LIGAND (UNLat)
13au: UNKNOWN LIGAND (UNLau)
13av: UNKNOWN LIGAND (UNLav)
13aw: UNKNOWN LIGAND (UNLaw)
13ax: UNKNOWN LIGAND (UNLax)
13ay: UNKNOWN LIGAND (UNLay)
13az: UNKNOWN LIGAND (UNLaz)
13b: UNKNOWN LIGAND (UNLb)
13ba: UNKNOWN LIGAND (UNLba)
13bb: UNKNOWN LIGAND (UNLbb)
13bc: UNKNOWN LIGAND (UNLbc)
13bd: UNKNOWN LIGAND (UNLbd)
13be: UNKNOWN LIGAND (UNLbe)
13bf: UNKNOWN LIGAND (UNLbf)
13bg: UNKNOWN LIGAND (UNLbg)
13bh: UNKNOWN LIGAND (UNLbh)
13bi: UNKNOWN LIGAND (UNLbi)
13bj: UNKNOWN LIGAND (UNLbj)
13bk: UNKNOWN LIGAND (UNLbk)
13bl: UNKNOWN LIGAND (UNLbl)
13bm: UNKNOWN LIGAND (UNLbm)
13bn: UNKNOWN LIGAND (UNLbn)
13bo: UNKNOWN LIGAND (UNLbo)
13bp: UNKNOWN LIGAND (UNLbp)
13bq: UNKNOWN LIGAND (UNLbq)
13br: UNKNOWN LIGAND (UNLbr)
13bs: UNKNOWN LIGAND (UNLbs)
13bt: UNKNOWN LIGAND (UNLbt)
13bu: UNKNOWN LIGAND (UNLbu)
13bv: UNKNOWN LIGAND (UNLbv)
13bw: UNKNOWN LIGAND (UNLbw)
13bx: UNKNOWN LIGAND (UNLbx)
13by: UNKNOWN LIGAND (UNLby)
13bz: UNKNOWN LIGAND (UNLbz)
13c: UNKNOWN LIGAND (UNLc)
13ca: UNKNOWN LIGAND (UNLca)
13cb: UNKNOWN LIGAND (UNLcb)
13cc: UNKNOWN LIGAND (UNLcc)
13cd: UNKNOWN LIGAND (UNLcd)
13ce: UNKNOWN LIGAND (UNLce)
13cf: UNKNOWN LIGAND (UNLcf)
13cg: UNKNOWN LIGAND (UNLcg)
13ch: UNKNOWN LIGAND (UNLch)
13ci: UNKNOWN LIGAND (UNLci)
13cj: UNKNOWN LIGAND (UNLcj)
13ck: UNKNOWN LIGAND (UNLck)
13cl: UNKNOWN LIGAND (UNLcl)
13cm: UNKNOWN LIGAND (UNLcm)
13cn: UNKNOWN LIGAND (UNLcn)
13co: UNKNOWN LIGAND (UNLco)
13cp: UNKNOWN LIGAND (UNLcp)
13cq: UNKNOWN LIGAND (UNLcq)
13d: UNKNOWN LIGAND (UNLd)
13e: UNKNOWN LIGAND (UNLe)
13f: UNKNOWN LIGAND (UNLf)
13g: UNKNOWN LIGAND (UNLg)
13h: UNKNOWN LIGAND (UNLh)
13i: UNKNOWN LIGAND (UNLi)
13j: UNKNOWN LIGAND (UNLj)
13k: UNKNOWN LIGAND (UNLk)
13l: UNKNOWN LIGAND (UNLl)
13m: UNKNOWN LIGAND (UNLm)
13n: UNKNOWN LIGAND (UNLn)
13o: UNKNOWN LIGAND (UNLo)
13p: UNKNOWN LIGAND (UNLp)
13q: UNKNOWN LIGAND (UNLq)
13r: UNKNOWN LIGAND (UNLr)
13s: UNKNOWN LIGAND (UNLs)
13t: UNKNOWN LIGAND (UNLt)
13u: UNKNOWN LIGAND (UNLu)
13v: UNKNOWN LIGAND (UNLv)
13w: UNKNOWN LIGAND (UNLw)
13x: UNKNOWN LIGAND (UNLx)
13y: UNKNOWN LIGAND (UNLy)
13z: UNKNOWN LIGAND (UNLz)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
AZI
1
Ligand/Ion
AZIDE ION
2
BHG
2
Ligand/Ion
2-HEXYLOXY-6-HYDROXYMETHYL-TETRAHYDRO-PYRAN-3,4,5-TRIOL
3
CBE
2
Ligand/Ion
2-METHYL-N-PHENYL-5,6-DIHYDRO-1,4-OXATHIINE-3-CARBOXAMIDE
4
F3S
2
Ligand/Ion
FE3-S4 CLUSTER
5
FAD
2
Ligand/Ion
FLAVIN-ADENINE DINUCLEOTIDE
6
FES
2
Ligand/Ion
FE2/S2 (INORGANIC) CLUSTER
7
GOL
4
Ligand/Ion
GLYCEROL
8
HEM
2
Ligand/Ion
PROTOPORPHYRIN IX CONTAINING FE
9
K
4
Ligand/Ion
POTASSIUM ION
10
PEE
2
Ligand/Ion
1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOETHANOLAMINE
11
SF4
2
Ligand/Ion
IRON/SULFUR CLUSTER
12
TEO
2
Ligand/Ion
MALATE LIKE INTERMEDIATE
13
UNL
95
Ligand/Ion
UNKNOWN LIGAND
[
close Hetero Component info
]
Sites
(64, 64)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
30: DC3 (SOFTWARE)
31: DC4 (SOFTWARE)
32: DC5 (SOFTWARE)
33: DC6 (SOFTWARE)
34: DC7 (SOFTWARE)
35: DC8 (SOFTWARE)
36: DC9 (SOFTWARE)
37: EC1 (SOFTWARE)
38: EC2 (SOFTWARE)
39: EC3 (SOFTWARE)
40: EC4 (SOFTWARE)
41: EC5 (SOFTWARE)
42: EC6 (SOFTWARE)
43: EC7 (SOFTWARE)
44: EC8 (SOFTWARE)
45: EC9 (SOFTWARE)
46: FC1 (SOFTWARE)
47: FC2 (SOFTWARE)
48: FC3 (SOFTWARE)
49: FC4 (SOFTWARE)
50: FC5 (SOFTWARE)
51: FC6 (SOFTWARE)
52: FC7 (SOFTWARE)
53: FC8 (SOFTWARE)
54: FC9 (SOFTWARE)
55: GC1 (SOFTWARE)
56: GC2 (SOFTWARE)
57: GC3 (SOFTWARE)
58: GC4 (SOFTWARE)
59: GC5 (SOFTWARE)
60: GC6 (SOFTWARE)
61: GC7 (SOFTWARE)
62: GC8 (SOFTWARE)
63: GC9 (SOFTWARE)
64: HC1 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
LYS C:31 , TRP C:32 , SER C:33 , LEU C:34 , PRO C:35 , GLU C:120 , UNL C:289 , HOH C:1750 , HOH C:2605 , TYR P:85
BINDING SITE FOR RESIDUE BHG C 142
02
AC2
SOFTWARE
ALA C:139 , TRP P:32 , LEU P:34 , PRO P:35 , GLU P:120 , HOH P:1172 , HOH P:2485 , HOH P:2548
BINDING SITE FOR RESIDUE BHG P 204
03
AC3
SOFTWARE
TYR A:365 , ASN A:366 , MET A:367 , GLY A:368 , GLU A:397 , ALA A:399
BINDING SITE FOR RESIDUE K A 622
04
AC4
SOFTWARE
MET B:191 , ASP B:193 , ASP B:196 , THR B:199 , HOH B:1900
BINDING SITE FOR RESIDUE K B 253
05
AC5
SOFTWARE
TYR N:365 , ASN N:366 , MET N:367 , GLY N:368 , GLU N:397 , ALA N:399
BINDING SITE FOR RESIDUE K N 622
06
AC6
SOFTWARE
MET O:191 , ASP O:193 , ASP O:196 , THR O:199 , HOH O:1041
BINDING SITE FOR RESIDUE K O 253
07
AC7
SOFTWARE
TYR A:172 , VAL A:174 , HOH A:1854
BINDING SITE FOR RESIDUE AZI A 623
08
AC8
SOFTWARE
VAL A:24 , GLY A:25 , ALA A:26 , GLY A:27 , GLY A:28 , ALA A:29 , THR A:48 , LYS A:49 , LEU A:50 , SER A:55 , HIS A:56 , THR A:57 , ALA A:59 , ALA A:60 , GLN A:61 , GLY A:62 , GLY A:63 , TYR A:176 , PHE A:177 , ALA A:178 , ALA A:212 , THR A:213 , THR A:224 , ASP A:232 , LEU A:263 , HIS A:364 , TYR A:365 , GLY A:396 , GLU A:397 , ARG A:408 , ALA A:411 , ASN A:412 , SER A:413 , LEU A:414 , LEU A:417 , TEO A:1002 , HOH A:1692 , HOH A:1708 , HOH A:1735 , HOH A:1880
BINDING SITE FOR RESIDUE FAD A 1001
09
AC9
SOFTWARE
SER B:64 , CYS B:65 , ARG B:66 , GLY B:68 , CYS B:70 , GLY B:71 , CYS B:73 , CYS B:85
BINDING SITE FOR RESIDUE FES B 1002
10
BC1
SOFTWARE
CYS B:158 , ILE B:159 , CYS B:161 , ALA B:162 , CYS B:164 , CYS B:225 , PRO B:226 , LYS B:227
BINDING SITE FOR RESIDUE SF4 B 1003
11
BC2
SOFTWARE
CYS B:168 , TYR B:178 , CYS B:215 , HIS B:216 , THR B:217 , ILE B:218 , MET B:219 , ASN B:220 , CYS B:221 , ILE B:235
BINDING SITE FOR RESIDUE F3S B 1004
12
BC3
SOFTWARE
GLY N:25 , ALA N:26 , GLY N:27 , GLY N:28 , ALA N:29 , THR N:48 , LYS N:49 , LEU N:50 , SER N:55 , HIS N:56 , THR N:57 , ALA N:59 , ALA N:60 , GLN N:61 , GLY N:62 , GLY N:63 , TYR N:176 , PHE N:177 , ALA N:178 , ALA N:212 , THR N:213 , THR N:224 , ASP N:232 , LEU N:263 , HIS N:364 , TYR N:365 , GLY N:396 , GLU N:397 , ARG N:408 , ALA N:411 , ASN N:412 , SER N:413 , LEU N:414 , LEU N:417 , TEO N:1002 , HOH N:1026 , HOH N:1038 , HOH N:1051 , HOH N:1054 , HOH N:1133
BINDING SITE FOR RESIDUE FAD N 1001
13
BC4
SOFTWARE
SER O:64 , CYS O:65 , ARG O:66 , GLY O:68 , CYS O:70 , GLY O:71 , CYS O:73 , CYS O:85
BINDING SITE FOR RESIDUE FES O 1002
14
BC5
SOFTWARE
CYS O:158 , ILE O:159 , CYS O:161 , ALA O:162 , CYS O:164 , ALA O:182 , CYS O:225 , PRO O:226
BINDING SITE FOR RESIDUE SF4 O 1003
15
BC6
SOFTWARE
CYS O:168 , TYR O:178 , CYS O:215 , HIS O:216 , THR O:217 , ILE O:218 , MET O:219 , ASN O:220 , CYS O:221 , ILE O:235
BINDING SITE FOR RESIDUE F3S O 1004
16
BC7
SOFTWARE
HIS C:42 , ARG C:43 , GLY C:46 , LEU C:49 , SER C:50 , HIS C:98 , GLY C:102 , HIS C:105 , HOH C:1879 , HOH C:1903 , HOH C:2103 , ARG D:14 , LEU D:20 , LEU D:43 , HIS D:46 , GLY D:50
BINDING SITE FOR RESIDUE HEM C 143
17
BC8
SOFTWARE
PRO B:169 , TRP B:173 , HIS B:216 , ILE C:27 , TRP C:32 , MET C:36 , SER C:39 , ILE C:40 , ARG C:43 , HOH C:1687 , TYR D:58
BINDING SITE FOR RESIDUE CBE C 144
18
BC9
SOFTWARE
GLY A:62 , HIS A:253 , LEU A:263 , THR A:265 , GLU A:266 , ARG A:297 , HIS A:364 , ARG A:408 , GLY A:410 , ALA A:411 , FAD A:1001
BINDING SITE FOR RESIDUE TEO A 1002
19
CC1
SOFTWARE
GOL C:294 , ALA D:27 , TYR D:28 , TRP D:101
BINDING SITE FOR RESIDUE PEE D 109
20
CC2
SOFTWARE
HOH C:2865
BINDING SITE FOR RESIDUE UNL C 145
21
CC3
SOFTWARE
HOH O:1079 , HIS P:42 , ARG P:43 , GLY P:46 , LEU P:49 , SER P:50 , HIS P:98 , THR P:99 , GLY P:102 , HIS P:105 , HOH P:1002 , HOH P:1199 , ARG Q:14 , LEU Q:20 , LEU Q:43 , HIS Q:46 , GLY Q:50
BINDING SITE FOR RESIDUE HEM P 201
22
CC4
SOFTWARE
PRO O:169 , TRP O:173 , HIS O:216 , ILE O:218 , ILE P:27 , TRP P:32 , MET P:36 , SER P:39 , ILE P:40 , ARG P:43 , HOH P:1004 , TYR Q:58
BINDING SITE FOR RESIDUE CBE P 202
23
CC5
SOFTWARE
GLY N:62 , HIS N:253 , LEU N:263 , THR N:265 , GLU N:266 , ARG N:297 , HIS N:364 , ARG N:408 , GLY N:410 , ALA N:411 , FAD N:1001
BINDING SITE FOR RESIDUE TEO N 1002
24
CC6
SOFTWARE
SER P:141 , GOL P:208 , UNL P:211 , ALA Q:27 , VAL Q:97 , TRP Q:101
BINDING SITE FOR RESIDUE PEE Q 210
25
CC7
SOFTWARE
GOL P:208 , PEE Q:210
BINDING SITE FOR RESIDUE UNL P 211
26
CC8
SOFTWARE
GLN N:11 , TYR N:12 , GLN N:136 , ARG N:457
BINDING SITE FOR RESIDUE UNL N 1003
27
CC9
SOFTWARE
ASP O:176 , TRP P:13
BINDING SITE FOR RESIDUE UNL O 1005
28
DC1
SOFTWARE
TYR C:85 , HOH C:2876 , LEU P:127
BINDING SITE FOR RESIDUE UNL C 214
29
DC2
SOFTWARE
ALA B:78 , HOH B:1906 , HOH B:2343 , LYS C:31
BINDING SITE FOR RESIDUE UNL B 1005
30
DC3
SOFTWARE
PHE A:137 , SER A:612 , HOH A:2231
BINDING SITE FOR RESIDUE UNL A 1003
31
DC4
SOFTWARE
GLY A:272 , HOH A:2942
BINDING SITE FOR RESIDUE UNL A 1004
32
DC5
SOFTWARE
GLN N:11
BINDING SITE FOR RESIDUE UNL N 1006
33
DC6
SOFTWARE
GLN P:118
BINDING SITE FOR RESIDUE UNL P 224
34
DC7
SOFTWARE
GLU N:608
BINDING SITE FOR RESIDUE UNL N 1007
35
DC8
SOFTWARE
TYR N:258
BINDING SITE FOR RESIDUE UNL N 1011
36
DC9
SOFTWARE
PHE O:210
BINDING SITE FOR RESIDUE UNL O 1008
37
EC1
SOFTWARE
THR C:41
BINDING SITE FOR RESIDUE UNL C 240
38
EC2
SOFTWARE
TYR D:73
BINDING SITE FOR RESIDUE UNL D 245
39
EC3
SOFTWARE
UNL C:251
BINDING SITE FOR RESIDUE UNL C 248
40
EC4
SOFTWARE
UNL C:248
BINDING SITE FOR RESIDUE UNL C 251
41
EC5
SOFTWARE
ASP B:46
BINDING SITE FOR RESIDUE UNL B 258
42
EC6
SOFTWARE
LYS A:442 , ASN A:444
BINDING SITE FOR RESIDUE UNL A 1009
43
EC7
SOFTWARE
HOH A:2810
BINDING SITE FOR RESIDUE UNL A 1011
44
EC8
SOFTWARE
PRO B:209
BINDING SITE FOR RESIDUE UNL B 268
45
EC9
SOFTWARE
LYS A:354 , GLU A:355
BINDING SITE FOR RESIDUE UNL A 1014
46
FC1
SOFTWARE
HOH A:2544 , HOH A:2640 , HOH A:2892
BINDING SITE FOR RESIDUE UNL B 277
47
FC2
SOFTWARE
LYS A:593
BINDING SITE FOR RESIDUE UNL A 1017
48
FC3
SOFTWARE
TYR A:500
BINDING SITE FOR RESIDUE UNL A 1018
49
FC4
SOFTWARE
ARG B:10
BINDING SITE FOR RESIDUE UNL B 280
50
FC5
SOFTWARE
ALA A:451 , ASP A:454 , LYS A:455
BINDING SITE FOR RESIDUE UNL A 1019
51
FC6
SOFTWARE
TYR Q:73
BINDING SITE FOR RESIDUE UNL Q 288
52
FC7
SOFTWARE
BHG C:142
BINDING SITE FOR RESIDUE UNL C 289
53
FC8
SOFTWARE
PHE N:137 , SER N:612
BINDING SITE FOR RESIDUE UNL N 1017
54
FC9
SOFTWARE
GLU N:491
BINDING SITE FOR RESIDUE UNL N 1019
55
GC1
SOFTWARE
GLU N:18 , HOH N:1566
BINDING SITE FOR RESIDUE UNL N 1020
56
GC2
SOFTWARE
LYS N:474
BINDING SITE FOR RESIDUE UNL N 1021
57
GC3
SOFTWARE
PRO A:13 , GLY A:199
BINDING SITE FOR RESIDUE UNL A 1020
58
GC4
SOFTWARE
HIS A:326 , HIS A:327 , HOH A:2959
BINDING SITE FOR RESIDUE UNL A 1021
59
GC5
SOFTWARE
LYS N:474
BINDING SITE FOR RESIDUE UNL N 1022
60
GC6
SOFTWARE
LEU A:567 , PRO A:615
BINDING SITE FOR RESIDUE UNL A 1023
61
GC7
SOFTWARE
PHE C:56 , ILE D:93 , PEE D:109
BINDING SITE FOR RESIDUE GOL C 294
62
GC8
SOFTWARE
HIS B:104 , MET B:105 , TYR B:171 , HOH B:1772 , HOH B:1792 , HOH B:1821 , HOH B:1952 , HOH B:2154 , TRP C:13
BINDING SITE FOR RESIDUE GOL B 1010
63
GC9
SOFTWARE
HIS O:104 , MET O:105 , GLY O:175 , HOH O:1039 , HOH O:1047 , HOH O:1055 , HOH O:1099 , HOH O:1156 , PHE P:12 , TRP P:13
BINDING SITE FOR RESIDUE GOL O 1009
64
HC1
SOFTWARE
LEU P:91 , UNL P:211 , PEE Q:210
BINDING SITE FOR RESIDUE GOL P 208
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(5, 10)
Info
All PROSITE Patterns/Profiles
1: 2FE2S_FER_2 (B:12-105,O:12-105)
2: FRD_SDH_FAD_BINDING (A:54-63,N:54-63)
3: 2FE2S_FER_1 (B:65-73,O:65-73)
4: 4FE4S_FER_2 (B:148-178,O:148-178)
5: 4FE4S_FER_1 (B:158-169,O:158-169)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
2FE2S_FER_2
PS51085
2Fe-2S ferredoxin-type iron-sulfur binding domain profile.
SDHB_CHICK
50-143
2
B:12-105
O:12-105
2
FRD_SDH_FAD_BINDING
PS00504
Fumarate reductase / succinate dehydrogenase FAD-binding site.
SDHA_CHICK
98-107
2
A:54-63
N:54-63
3
2FE2S_FER_1
PS00197
2Fe-2S ferredoxin-type iron-sulfur binding region signature.
SDHB_CHICK
103-111
2
B:65-73
O:65-73
4
4FE4S_FER_2
PS51379
4Fe-4S ferredoxin-type iron-sulfur binding domain profile.
SDHB_CHICK
186-216
2
B:148-178
O:148-178
5
4FE4S_FER_1
PS00198
4Fe-4S ferredoxin-type iron-sulfur binding region signature.
SDHB_CHICK
196-207
2
B:158-169
O:158-169
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Exons
(0, 0)
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SCOP Domains
(3, 8)
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All SCOP Domains
1a: SCOP_d2fbwb2 (B:115-246)
1b: SCOP_d2fbwo2 (O:115-246)
2a: SCOP_d2fbwb1 (B:8-114)
2b: SCOP_d2fbwo1 (O:8-114)
3a: SCOP_d2fbwc_ (C:)
3b: SCOP_d2fbwd_ (D:)
3c: SCOP_d2fbwp_ (P:)
3d: SCOP_d2fbwq_ (Q:)
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Protein Domains
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Class
:
All alpha proteins
(14657)
Fold
:
Globin-like
(1351)
Superfamily
:
alpha-helical ferredoxin
(43)
Family
:
Fumarate reductase/Succinate dehydogenase iron-sulfur protein, C-terminal domain
(35)
Protein domain
:
Succinate dehydogenase
(16)
Chicken (Gallus gallus) [TaxId: 9031]
(6)
1a
d2fbwb2
B:115-246
1b
d2fbwo2
O:115-246
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
beta-Grasp (ubiquitin-like)
(1032)
Superfamily
:
2Fe-2S ferredoxin-like
(174)
Family
:
2Fe-2S ferredoxin domains from multidomain proteins
(82)
Protein domain
:
Succinate dehydogenase iron-sulfur protein, N-terminal domain
(16)
Chicken (Gallus gallus) [TaxId: 9031]
(6)
2a
d2fbwb1
B:8-114
2b
d2fbwo1
O:8-114
Class
:
Membrane and cell surface proteins and peptides
(2046)
Fold
:
Heme-binding four-helical bundle
(113)
Superfamily
:
Fumarate reductase respiratory complex transmembrane subunits
(55)
Family
:
Succinate dehydrogenase/Fumarate reductase transmembrane subunits (SdhC/FrdC and SdhD/FrdD)
(48)
Protein domain
:
automated matches
(11)
Chicken (Gallus gallus) [TaxId: 9031]
(6)
3a
d2fbwc_
C:
3b
d2fbwd_
D:
3c
d2fbwp_
P:
3d
d2fbwq_
Q:
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CATH Domains
(7, 16)
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all CATH domains
1a: CATH_2fbwN01 (N:10-256,N:361-439)
1b: CATH_2fbwA01 (A:9-256,A:361-439)
2a: CATH_2fbwB01 (B:8-114)
2b: CATH_2fbwO01 (O:8-114)
3a: CATH_2fbwA04 (A:557-621)
3b: CATH_2fbwN04 (N:557-621)
4a: CATH_2fbwB02 (B:115-246)
4b: CATH_2fbwO02 (O:115-246)
5a: CATH_2fbwC02 (C:33-141)
5b: CATH_2fbwD00 (D:3-103)
5c: CATH_2fbwQ00 (Q:3-103)
5d: CATH_2fbwP02 (P:33-141)
6a: CATH_2fbwA03 (A:440-556)
6b: CATH_2fbwN03 (N:440-556)
7a: CATH_2fbwC01 (C:2-32)
7b: CATH_2fbwP01 (P:2-32)
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Organisms
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Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(bba) Sandwich
(528)
Topology
:
FAD/NAD(P)-binding domain
(373)
Homologous Superfamily
:
[code=3.50.50.60, no name defined]
(373)
Chicken (Gallus gallus)
(6)
1a
2fbwN01
N:10-256,N:361-439
1b
2fbwA01
A:9-256,A:361-439
Architecture
:
Roll
(3276)
Topology
:
Ubiquitin-like (UB roll)
(674)
Homologous Superfamily
:
[code=3.10.20.30, no name defined]
(153)
Chicken (Gallus gallus)
(6)
2a
2fbwB01
B:8-114
2b
2fbwO01
O:8-114
Class
:
Few Secondary Structures
(1120)
Architecture
:
Irregular
(1120)
Topology
:
Rhinovirus 14, subunit 4
(101)
Homologous Superfamily
:
succinate dehydrogenase protein domain
(23)
Chicken (Gallus gallus)
(6)
3a
2fbwA04
A:557-621
3b
2fbwN04
N:557-621
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Fumarate Reductase Iron-sulfur Protein; Chain B, domain 2
(33)
Homologous Superfamily
:
Fumarate Reductase Iron-sulfur Protein; Chain B, domain 2
(33)
Chicken (Gallus gallus)
(6)
4a
2fbwB02
B:115-246
4b
2fbwO02
O:115-246
Architecture
:
Up-down Bundle
(3216)
Topology
:
3 helical TM bundles of succinate and fumarate reductases
(23)
Homologous Superfamily
:
Fumarate reductase respiratory complex transmembrane subunits
(23)
Chicken (Gallus gallus)
(6)
5a
2fbwC02
C:33-141
5b
2fbwD00
D:3-103
5c
2fbwQ00
Q:3-103
5d
2fbwP02
P:33-141
Topology
:
Methane Monooxygenase Hydroxylase; Chain G, domain 1
(192)
Homologous Superfamily
:
[code=1.20.58.100, no name defined]
(37)
Chicken (Gallus gallus)
(6)
6a
2fbwA03
A:440-556
6b
2fbwN03
N:440-556
Topology
:
Single alpha-helices involved in coiled-coils or other helix-helix interfaces
(552)
Homologous Superfamily
:
Single helix bin
(17)
Chicken (Gallus gallus)
(8)
7a
2fbwC01
C:2-32
7b
2fbwP01
P:2-32
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Pfam Domains
(0, 0)
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