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2F8N
Asym. Unit
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Asym.Unit (248 KB)
Biol.Unit 1 (241 KB)
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Title
:
2.9 ANGSTROM X-RAY STRUCTURE OF HYBRID MACROH2A NUCLEOSOMES
Authors
:
S. Chakravarthy, K. Luger
Date
:
02 Dec 05 (Deposition) - 23 May 06 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.90
Chains
:
Asym. Unit : A,B,D,E,F,G,H,I,J,K
Biol. Unit 1: A,B,D,E,F,G,H,I,J,K (1x)
Keywords
:
Nucleosome, Ncp, Macroh2A, Histone Variant, Chromatin, X- Ray Structure, Crystallography, Structural Protein/Dna Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. Chakravarthy, K. Luger
Nucleosomes Containing The Histone Domain Of Macroh2A: In Vitro Possibilities.
To Be Published
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
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Sites
(0, 0)
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PROSITE Patterns/Profiles
(3, 5)
Info
All PROSITE Patterns/Profiles
1: HISTONE_H2A (K:21-27)
2: HISTONE_H3_2 (A:466-474,E:666-674)
3: HISTONE_H2B (H:1489-1511,D:1289-1311)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
HISTONE_H2A
PS00046
Histone H2A signature.
H2A1H_MOUSE
22-28
1
K:21-27
2
HISTONE_H3_2
PS00959
Histone H3 signature 2.
H32_XENLA
67-75
2
A:466-474
E:666-674
3
HISTONE_H2B
PS00357
Histone H2B signature.
H2B11_XENLA
93-115
1
H:1489-1511
H2B3A_MOUSE
93-115
1
D:1289-1311
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Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(6, 8)
Info
All SCOP Domains
1a: SCOP_d2f8nk1 (K:14-118)
2a: SCOP_d2f8nh_ (H:)
3a: SCOP_d2f8nd_ (D:)
4a: SCOP_d2f8na_ (A:)
4b: SCOP_d2f8ne_ (E:)
5a: SCOP_d2f8nb_ (B:)
5b: SCOP_d2f8nf_ (F:)
6a: SCOP_d2f8ng_ (G:)
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Protein Domains
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Class
:
All alpha proteins
(14657)
Fold
:
Histone-fold
(277)
Superfamily
:
Histone-fold
(277)
Family
:
Nucleosome core histones
(247)
Protein domain
:
Histone H2A
(45)
Mouse (Mus musculus), H2A.1 [TaxId: 10090]
(1)
1a
d2f8nk1
K:14-118
Protein domain
:
Histone H2B
(48)
African clawed frog (Xenopus laevis) [TaxId: 8355]
(35)
2a
d2f8nh_
H:
Mouse (Mus musculus), H2Ba [TaxId: 10090]
(2)
3a
d2f8nd_
D:
Protein domain
:
Histone H3
(58)
African clawed frog (Xenopus laevis) [TaxId: 8355]
(39)
4a
d2f8na_
A:
4b
d2f8ne_
E:
Protein domain
:
Histone H4
(60)
African clawed frog (Xenopus laevis) [TaxId: 8355]
(38)
5a
d2f8nb_
B:
5b
d2f8nf_
F:
Protein domain
:
macro-H2A.1, histone domain
(2)
Human (Homo sapiens) [TaxId: 9606]
(2)
6a
d2f8ng_
G:
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CATH Domains
(1, 8)
Info
all CATH domains
1a: CATH_2f8nA00 (A:438-535)
1b: CATH_2f8nK00 (K:14-118)
1c: CATH_2f8nG00 (G:1012-1119)
1d: CATH_2f8nB00 (B:24-102)
1e: CATH_2f8nE00 (E:638-735)
1f: CATH_2f8nH00 (H:1430-1522)
1g: CATH_2f8nD00 (D:1230-1322)
1h: CATH_2f8nF00 (F:219-302)
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Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Histone, subunit A
(62)
Homologous Superfamily
:
Histone, subunit A
(62)
Human (Homo sapiens)
(28)
1a
2f8nA00
A:438-535
1b
2f8nK00
K:14-118
1c
2f8nG00
G:1012-1119
1d
2f8nB00
B:24-102
1e
2f8nE00
E:638-735
1f
2f8nH00
H:1430-1522
1g
2f8nD00
D:1230-1322
1h
2f8nF00
F:219-302
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Pfam Domains
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Asymmetric Unit 1
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Asym.Unit (248 KB)
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