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2F83
Asym. Unit
Info
Asym.Unit (103 KB)
Biol.Unit 1 (190 KB)
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(1)
Title
:
CRYSTAL STRUCTURE AT 2.9 ANGSTROMS RESOLUTION OF HUMAN PLASMA COAGULATION FACTOR XI ZYMOGEN
Authors
:
E. Papagrigoriou, P. A. Mcewan, P. N. Walsh, J. Emsley
Date
:
01 Dec 05 (Deposition) - 16 May 06 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.87
Chains
:
Asym. Unit : A
Biol. Unit 1: A (2x)
Keywords
:
Protease, Apple Domain, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
E. Papagrigoriou, P. A. Mcewan, P. N. Walsh, J. Emsley
Crystal Structure Of The Factor Xi Zymogen Reveals A Pathwa For Transactivation.
Nat. Struct. Mol. Biol. V. 13 557 2006
[
close entry info
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Hetero Components
(2, 6)
Info
All Hetero Components
1a: N-ACETYL-D-GLUCOSAMINE (NAGa)
1b: N-ACETYL-D-GLUCOSAMINE (NAGb)
1c: N-ACETYL-D-GLUCOSAMINE (NAGc)
1d: N-ACETYL-D-GLUCOSAMINE (NAGd)
2a: PLATINUM (II) ION (PTa)
2b: PLATINUM (II) ION (PTb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
NAG
4
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
2
PT
2
Ligand/Ion
PLATINUM (II) ION
[
close Hetero Component info
]
Sites
(4, 4)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASN A:72
BINDING SITE FOR RESIDUE NAG A 901
2
AC2
SOFTWARE
ASN A:108 , NAG A:911
BINDING SITE FOR RESIDUE NAG A 910
3
AC3
SOFTWARE
NAG A:910
BINDING SITE FOR RESIDUE NAG A 911
4
AC4
SOFTWARE
ASN A:432 , THR A:513
BINDING SITE FOR RESIDUE NAG A 920
[
close Site info
]
SAPs(SNPs)/Variants
(56, 56)
Info
(mutated residues are not available)
All SNPs/Variants
01: VAR_067929 (G14R, chain A, )
02: VAR_012085 (D16H, chain A, )
03: VAR_067930 (A25T, chain A, )
04: VAR_054894 (C28F, chain A, )
05: VAR_067931 (T33I, chain A, )
06: VAR_067932 (T33P, chain A, )
07: VAR_067933 (H35Q, chain A, )
08: VAR_054895 (C38R, chain A, )
09: VAR_067934 (A45V, chain A, )
10: VAR_011774 (P48L, chain A, )
11: VAR_054896 (K83R, chain A, )
12: VAR_067935 (C122Y, chain A, )
13: VAR_054897 (Y133C, chain A, )
14: VAR_067936 (D204Y, chain A, )
15: VAR_067937 (R210Q, chain A, )
16: VAR_067938 (F223L, chain A, )
17: VAR_011775 (Q226R, chain A, )
18: VAR_012086 (W228C, chain A, )
19: VAR_067939 (R234T, chain A, )
20: VAR_054898 (C237Y, chain A, )
21: VAR_054899 (G245E, chain A, )
22: VAR_012087 (S248N, chain A, )
23: VAR_054900 (K252I, chain A, )
24: VAR_067940 (S258C, chain A, )
25: VAR_067941 (G259D, chain A, )
26: VAR_006622 (F283L, chain A, )
27: VAR_011776 (I290F, chain A, )
28: VAR_067942 (E297K, chain A, )
29: VAR_012088 (L302P, chain A, )
30: VAR_012089 (T304I, chain A, )
31: VAR_012090 (R308C, chain A, )
32: VAR_067943 (T313I, chain A, )
33: VAR_011777 (C321F, chain A, )
34: VAR_012091 (E323K, chain A, )
35: VAR_067944 (L342P, chain A, )
36: VAR_011778 (W381R, chain A, )
37: VAR_067945 (W383R, chain A, )
38: VAR_067946 (V385M, chain A, )
39: VAR_012092 (T386N, chain A, )
40: VAR_054901 (G400V, chain A, )
41: VAR_012093 (A412V, chain A, )
42: VAR_067947 (I436K, chain A, )
43: VAR_012094 (F442V, chain A, )
44: VAR_067948 (I463S, chain A, )
45: VAR_012095 (T475I, chain A, )
46: VAR_067949 (S485P, chain A, )
47: VAR_067950 (D488G, chain A, )
48: VAR_054902 (Y493H, chain A, )
49: VAR_067951 (C496F, chain A, )
50: VAR_054903 (P520L, chain A, )
51: VAR_067953 (S557L, chain A, )
52: VAR_054905 (W569S, chain A, )
53: VAR_012096 (S576R, chain A, )
54: VAR_067954 (E579K, chain A, )
55: VAR_067955 (Y590H, chain A, )
56: VAR_054906 (I600S, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
01
UniProt
VAR_067929
G
32
R
FA11_HUMAN
Disease (FA11D)
281875259
A
G
14
R
02
UniProt
VAR_012085
D
34
H
FA11_HUMAN
Disease (FA11D)
281875267
A
D
16
H
03
UniProt
VAR_067930
A
43
T
FA11_HUMAN
Disease (FA11D)
281875264
A
A
25
T
04
UniProt
VAR_054894
C
46
F
FA11_HUMAN
Disease (FA11D)
281875271
A
C
28
F
05
UniProt
VAR_067931
T
51
I
FA11_HUMAN
Disease (FA11D)
281875252
A
T
33
I
06
UniProt
VAR_067932
T
51
P
FA11_HUMAN
Disease (FA11D)
281875243
A
T
33
P
07
UniProt
VAR_067933
H
53
Q
FA11_HUMAN
Disease (FA11D)
281875261
A
H
35
Q
08
UniProt
VAR_054895
C
56
R
FA11_HUMAN
Disease (FA11D)
121965069
A
C
38
R
09
UniProt
VAR_067934
A
63
V
FA11_HUMAN
Disease (FA11D)
281875244
A
A
45
V
10
UniProt
VAR_011774
P
66
L
FA11_HUMAN
Polymorphism
5968
A
P
48
L
11
UniProt
VAR_054896
K
101
R
FA11_HUMAN
Disease (FA11D)
281875272
A
K
83
R
12
UniProt
VAR_067935
C
140
Y
FA11_HUMAN
Disease (FA11D)
281875256
A
C
122
Y
13
UniProt
VAR_054897
Y
151
C
FA11_HUMAN
Disease (FA11D)
281875273
A
Y
133
C
14
UniProt
VAR_067936
D
222
Y
FA11_HUMAN
Disease (FA11D)
281875245
A
D
204
Y
15
UniProt
VAR_067937
R
228
Q
FA11_HUMAN
Disease (FA11D)
281875246
A
R
210
Q
16
UniProt
VAR_067938
F
241
L
FA11_HUMAN
Disease (FA11D)
281875265
A
F
223
L
17
UniProt
VAR_011775
Q
244
R
FA11_HUMAN
Polymorphism
5969
A
Q
226
R
18
UniProt
VAR_012086
W
246
C
FA11_HUMAN
Disease (FA11D)
281875279
A
W
228
C
19
UniProt
VAR_067939
R
252
T
FA11_HUMAN
Disease (FA11D)
281875260
A
R
234
T
20
UniProt
VAR_054898
C
255
Y
FA11_HUMAN
Disease (FA11D)
281875277
A
C
237
Y
21
UniProt
VAR_054899
G
263
E
FA11_HUMAN
Disease (FA11D)
281875274
A
G
245
E
22
UniProt
VAR_012087
S
266
N
FA11_HUMAN
Disease (FA11D)
145168351
A
S
248
N
23
UniProt
VAR_054900
K
270
I
FA11_HUMAN
Disease (FA11D)
121965070
A
K
252
I
24
UniProt
VAR_067940
S
276
C
FA11_HUMAN
Disease (FA11D)
281875247
A
S
258
C
25
UniProt
VAR_067941
G
277
D
FA11_HUMAN
Disease (FA11D)
281875248
A
G
259
D
26
UniProt
VAR_006622
F
301
L
FA11_HUMAN
Disease (FA11D)
121965064
A
F
283
L
27
UniProt
VAR_011776
I
308
F
FA11_HUMAN
Polymorphism
5972
A
I
290
F
28
UniProt
VAR_067942
E
315
K
FA11_HUMAN
Disease (FA11D)
281875257
A
E
297
K
29
UniProt
VAR_012088
L
320
P
FA11_HUMAN
Disease (FA11D)
281875268
A
L
302
P
30
UniProt
VAR_012089
T
322
I
FA11_HUMAN
Disease (FA11D)
281875269
A
T
304
I
31
UniProt
VAR_012090
R
326
C
FA11_HUMAN
Disease (FA11D)
28934608
A
R
308
C
32
UniProt
VAR_067943
T
331
I
FA11_HUMAN
Disease (FA11D)
281875253
A
T
313
I
33
UniProt
VAR_011777
C
339
F
FA11_HUMAN
Polymorphism
5967
A
C
321
F
34
UniProt
VAR_012091
E
341
K
FA11_HUMAN
Disease (FA11D)
281875270
A
E
323
K
35
UniProt
VAR_067944
L
360
P
FA11_HUMAN
Disease (FA11D)
281875254
A
L
342
P
36
UniProt
VAR_011778
W
399
R
FA11_HUMAN
Polymorphism
1800439
A
W
381
R
37
UniProt
VAR_067945
W
401
R
FA11_HUMAN
Disease (FA11D)
281875262
A
W
383
R
38
UniProt
VAR_067946
V
403
M
FA11_HUMAN
Disease (FA11D)
281875266
A
V
385
M
39
UniProt
VAR_012092
T
404
N
FA11_HUMAN
Disease (FA11D)
121965067
A
T
386
N
40
UniProt
VAR_054901
G
418
V
FA11_HUMAN
Disease (FA11D)
121965071
A
G
400
V
41
UniProt
VAR_012093
A
430
V
FA11_HUMAN
Disease (FA11D)
121965068
A
A
412
V
42
UniProt
VAR_067947
I
454
K
FA11_HUMAN
Disease (FA11D)
281875241
A
I
436
K
43
UniProt
VAR_012094
F
460
V
FA11_HUMAN
Disease (FA11D)
121965065
A
F
442
V
44
UniProt
VAR_067948
I
481
S
FA11_HUMAN
Disease (FA11D)
281875242
A
I
463
S
45
UniProt
VAR_012095
T
493
I
FA11_HUMAN
Disease (FA11D)
---
A
T
475
I
46
UniProt
VAR_067949
S
503
P
FA11_HUMAN
Disease (FA11D)
140068026
A
S
485
P
47
UniProt
VAR_067950
D
506
G
FA11_HUMAN
Disease (FA11D)
281875258
A
D
488
G
48
UniProt
VAR_054902
Y
511
H
FA11_HUMAN
Disease (FA11D)
281875278
A
Y
493
H
49
UniProt
VAR_067951
C
514
F
FA11_HUMAN
Disease (FA11D)
281875249
A
C
496
F
50
UniProt
VAR_054903
P
538
L
FA11_HUMAN
Disease (FA11D)
139695003
A
P
520
L
51
UniProt
VAR_067953
S
575
L
FA11_HUMAN
Disease (FA11D)
281875250
A
S
557
L
52
UniProt
VAR_054905
W
587
S
FA11_HUMAN
Disease (FA11D)
121965072
A
W
569
S
53
UniProt
VAR_012096
S
594
R
FA11_HUMAN
Disease (FA11D)
28934609
A
S
576
R
54
UniProt
VAR_067954
E
597
K
FA11_HUMAN
Disease (FA11D)
281875251
A
E
579
K
55
UniProt
VAR_067955
Y
608
H
FA11_HUMAN
Disease (FA11D)
281875255
A
Y
590
H
56
UniProt
VAR_054906
I
618
S
FA11_HUMAN
Disease (FA11D)
281875276
A
I
600
S
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(5, 7)
Info
All PROSITE Patterns/Profiles
1: APPLE (A:2-85|A:92-175|A:182-265|A:273-35...)
2: PAN (A:2-85|A:92-175|A:182-265|A:273-35...)
3: TRYPSIN_DOM (A:370-604)
4: TRYPSIN_HIS (A:409-414)
5: TRYPSIN_SER (A:554-562)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
APPLE
PS00495
Apple domain.
FA11_HUMAN
20-103
110-193
200-283
291-374
4
A:2-85
A:92-175
A:182-265
A:273-356
2
PAN
PS50948
PAN/Apple domain profile.
FA11_HUMAN
20-103
110-193
200-283
291-374
4
A:2-85
A:92-175
A:182-265
A:273-356
3
TRYPSIN_DOM
PS50240
Serine proteases, trypsin domain profile.
FA11_HUMAN
388-623
1
A:370-604
4
TRYPSIN_HIS
PS00134
Serine proteases, trypsin family, histidine active site.
FA11_HUMAN
427-432
1
A:409-414
5
TRYPSIN_SER
PS00135
Serine proteases, trypsin family, serine active site.
FA11_HUMAN
569-580
1
A:554-562
[
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]
Exons
(0, 0)
Info
All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
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CATH Domains
(0, 0)
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all CATH domains
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Pfam Domains
(0, 0)
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all PFAM domains
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