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2F5Y
Asym. Unit
Info
Asym.Unit (33 KB)
Biol.Unit 1 (15 KB)
Biol.Unit 2 (15 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE PDZ DOMAIN FROM HUMAN RGS-3
Authors
:
E. Ugochukwu, G. Berridge, C. Johansson, C. Smee, P. Savitsky, N. Burge S. Colebrook, X. Yang, J. Elkins, D. Doyle, A. Turnbull, E. Papagrigor J. Debreczeni, G. Bunkoczi, F. Gorrec, F. Von Delft, C. Arrowsmith, M. Sundstrom, J. Weigelt, A. Edwards, Structural Genomics Consort
Date
:
28 Nov 05 (Deposition) - 13 Dec 05 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.39
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Pdz Domain, Rgs-3, Human, Structural Genomics, Structural Genomics Consortium, Sgc, Signaling Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
E. Ugochukwu, G. Berridge, C. Johansson, C. Smee, P. Savitsky, N. Burgess, S. Colebrook, X. Yang, J. Elkins, D. Doyle, A. Turnbull, E. Papagrigoriou, J. Debreczeni, G. Bunkoczi, F. Gorrec, F. Von Delft, C. Arrowsmith, M. Sundstrom, J. Weigelt, A. Edwards
Crystal Structure Of The Pdz Domain From Human Rgs-3
To Be Published
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Hetero Components
(1, 2)
Info
All Hetero Components
1a: SULFATE ION (SO4a)
1b: SULFATE ION (SO4b)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
SO4
2
Ligand/Ion
SULFATE ION
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Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
GLY A:24 , LYS A:25 , PRO A:48 , ARG A:51 , GLY B:24 , LYS B:25 , ASP B:26
BINDING SITE FOR RESIDUE SO4 A 1
2
AC2
SOFTWARE
VAL A:74 , ALA A:77 , HIS A:78 , ARG A:81 , HOH A:122 , LYS B:72
BINDING SITE FOR RESIDUE SO4 A 2
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: PDZ (A:19-95,B:19-95)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PDZ
PS50106
PDZ domain profile.
RGS3_HUMAN
299-376
2
A:19-95
B:19-95
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Exons
(5, 10)
Info
All Exons
Exon 1.11 (A:14-17 | B:14-17)
Exon 1.12 (A:18-18 | B:18-18)
Exon 1.16b (A:19-46 | B:19-46)
Exon 1.17 (A:46-81 | B:46-81)
Exon 1.18c (A:81-95 | B:81-95)
View:
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All Exon Boundaries
1: Boundary 1.10b/1.11
2: Boundary 1.11/1.12
3: Boundary 1.12/1.16b
4: Boundary 1.16b/1.17
5: Boundary 1.17/1.18c
6: Boundary 1.18c/1.19
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000374140
1
ENSE00001938738
chr9:
116207011-116207207
197
RGS3_HUMAN
-
0
0
-
-
1.2a
ENST00000374140
2a
ENSE00001923205
chr9:
116222525-116222616
92
RGS3_HUMAN
1-27
27
0
-
-
1.3b
ENST00000374140
3b
ENSE00001462643
chr9:
116223987-116224140
154
RGS3_HUMAN
27-78
52
0
-
-
1.4
ENST00000374140
4
ENSE00001748508
chr9:
116224301-116224481
181
RGS3_HUMAN
79-139
61
0
-
-
1.6c
ENST00000374140
6c
ENSE00001695107
chr9:
116241771-116241821
51
RGS3_HUMAN
139-156
18
0
-
-
1.7b
ENST00000374140
7b
ENSE00001591902
chr9:
116245339-116245397
59
RGS3_HUMAN
156-175
20
0
-
-
1.8
ENST00000374140
8
ENSE00001723744
chr9:
116246418-116246512
95
RGS3_HUMAN
176-207
32
0
-
-
1.9b
ENST00000374140
9b
ENSE00001791421
chr9:
116247905-116247973
69
RGS3_HUMAN
207-230
24
0
-
-
1.10b
ENST00000374140
10b
ENSE00001735908
chr9:
116258066-116258126
61
RGS3_HUMAN
230-250
21
0
-
-
1.11
ENST00000374140
11
ENSE00001625292
chr9:
116259594-116259684
91
RGS3_HUMAN
251-281
31
2
A:14-17
B:14-17
4
4
1.12
ENST00000374140
12
ENSE00001594147
chr9:
116260305-116260360
56
RGS3_HUMAN
281-299
19
2
A:18-18
B:18-18
1
1
1.16b
ENST00000374140
16b
ENSE00001703355
chr9:
116267722-116267803
82
RGS3_HUMAN
300-327
28
2
A:19-46
B:19-46
28
28
1.17
ENST00000374140
17
ENSE00001785995
chr9:
116268668-116268773
106
RGS3_HUMAN
327-362
36
2
A:46-81
B:46-81
36
36
1.18c
ENST00000374140
18c
ENSE00001783167
chr9:
116269567-116269918
352
RGS3_HUMAN
362-479
118
2
A:81-95
B:81-95
15
15
1.19
ENST00000374140
19
ENSE00001645856
chr9:
116270821-116270860
40
RGS3_HUMAN
480-493
14
0
-
-
1.20
ENST00000374140
20
ENSE00001780945
chr9:
116276738-116276934
197
RGS3_HUMAN
493-558
66
0
-
-
1.22b
ENST00000374140
22b
ENSE00001624107
chr9:
116279821-116279904
84
RGS3_HUMAN
559-586
28
0
-
-
1.25
ENST00000374140
25
ENSE00001755698
chr9:
116285210-116285321
112
RGS3_HUMAN
587-624
38
0
-
-
1.26
ENST00000374140
26
ENSE00001786061
chr9:
116291501-116291544
44
RGS3_HUMAN
624-638
15
0
-
-
1.27d
ENST00000374140
27d
ENSE00001747014
chr9:
116299076-116299198
123
RGS3_HUMAN
639-679
41
0
-
-
1.31n
ENST00000374140
31n
ENSE00001717471
chr9:
116345730-116346707
978
RGS3_HUMAN
680-1005
326
0
-
-
1.32a
ENST00000374140
32a
ENSE00001696453
chr9:
116353613-116353677
65
RGS3_HUMAN
1006-1027
22
0
-
-
1.33c
ENST00000374140
33c
ENSE00002113884
chr9:
116356710-116356811
102
RGS3_HUMAN
1027-1061
35
0
-
-
1.34a
ENST00000374140
34a
ENSE00002187394
chr9:
116357199-116357260
62
RGS3_HUMAN
1061-1082
22
0
-
-
1.35c
ENST00000374140
35c
ENSE00002127856
chr9:
116357879-116358045
167
RGS3_HUMAN
1082-1137
56
0
-
-
1.36c
ENST00000374140
36c
ENSE00001434265
chr9:
116359048-116360018
971
RGS3_HUMAN
1138-1198
61
0
-
-
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SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d2f5ya1 (A:19-95)
1b: SCOP_d2f5yb_ (B:)
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Class
:
All beta proteins
(24004)
Fold
:
PDZ domain-like
(299)
Superfamily
:
PDZ domain-like
(299)
Family
:
PDZ domain
(180)
Protein domain
:
Regulator of G-protein signaling 3, RGS3
(2)
Human (Homo sapiens) [TaxId: 9606]
(1)
1a
d2f5ya1
A:19-95
1b
d2f5yb_
B:
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Pfam Domains
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