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2EQ9
Biol. Unit 2
Info
Asym.Unit (606 KB)
Biol.Unit 1 (156 KB)
Biol.Unit 2 (158 KB)
Biol.Unit 3 (158 KB)
Biol.Unit 4 (156 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF LIPOAMIDE DEHYDROGENASE FROM THERMUS THERMOPHILUS HB8 WITH PSBDB
Authors
:
T. Nakai, N. Kamiya, Riken Structural Genomics/Proteomics Initia (Rsgi)
Date
:
30 Mar 07 (Deposition) - 01 Apr 08 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.09
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L
Biol. Unit 1: A,B,C (1x)
Biol. Unit 2: D,E,F (1x)
Biol. Unit 3: G,H,I (1x)
Biol. Unit 4: J,K,L (1x)
Keywords
:
Protein-Protein Complex, Oxidoreductase, Structural Genomics, Nppsfa, National Project On Protein Structural And Functional Analyses, Riken Structural Genomics/Proteomics Initiative, Rsgi
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
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Reference
:
T. Nakai, N. Kamiya
Crystal Structure Of Lipoamide Dehydrogenase From Thermus Thermophilus Hb8
To Be Published
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Hetero Components
(1, 2)
Info
All Hetero Components
1a: FLAVIN-ADENINE DINUCLEOTIDE (FADa)
1b: FLAVIN-ADENINE DINUCLEOTIDE (FADb)
1c: FLAVIN-ADENINE DINUCLEOTIDE (FADc)
1d: FLAVIN-ADENINE DINUCLEOTIDE (FADd)
1e: FLAVIN-ADENINE DINUCLEOTIDE (FADe)
1f: FLAVIN-ADENINE DINUCLEOTIDE (FADf)
1g: FLAVIN-ADENINE DINUCLEOTIDE (FADg)
1h: FLAVIN-ADENINE DINUCLEOTIDE (FADh)
View:
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Label:
No.
Name
Count
Type
Full Name
1
FAD
2
Ligand/Ion
FLAVIN-ADENINE DINUCLEOTIDE
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Sites
(2, 2)
Info
All Sites
1: AC3 (SOFTWARE)
2: AC4 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC3
SOFTWARE
ILE D:15 , GLY D:16 , GLY D:18 , PRO D:19 , GLY D:20 , GLU D:39 , ALA D:40 , GLU D:42 , GLY D:45 , CYS D:47 , GLY D:51 , CYS D:52 , THR D:55 , LYS D:56 , GLY D:117 , PHE D:118 , ALA D:119 , ALA D:146 , THR D:147 , GLY D:148 , SER D:166 , ARG D:274 , ARG D:277 , LEU D:281 , GLY D:313 , ASP D:314 , LEU D:320 , LEU D:321 , ALA D:322 , HIS D:323 , TYR D:353 , HOH D:2491 , HOH D:2493 , HOH D:2496 , HOH D:2503 , HOH D:2504 , HOH D:2575 , HIS E:446
BINDING SITE FOR RESIDUE FAD D 2482
2
AC4
SOFTWARE
HIS D:446 , ILE E:15 , GLY E:16 , GLY E:18 , PRO E:19 , GLY E:20 , GLU E:39 , ALA E:40 , GLU E:42 , GLY E:45 , CYS E:47 , GLY E:51 , CYS E:52 , THR E:55 , LYS E:56 , GLY E:117 , PHE E:118 , ALA E:119 , ALA E:146 , THR E:147 , GLY E:148 , SER E:166 , ARG E:274 , ARG E:277 , LEU E:281 , GLY E:313 , ASP E:314 , LEU E:320 , LEU E:321 , ALA E:322 , HIS E:323 , TYR E:353 , HOH E:3491 , HOH E:3503 , HOH E:3508 , HOH E:3514 , HOH E:3522 , HOH E:3585
BINDING SITE FOR RESIDUE FAD E 3482
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
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Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
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SCOP Domains
(0, 0)
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CATH Domains
(3, 28)
Info
all CATH domains
1a: CATH_2eq9A03 (A:347-469)
1b: CATH_2eq9G03 (G:347-469)
1c: CATH_2eq9H03 (H:347-469)
1d: CATH_2eq9J03 (J:347-469)
1e: CATH_2eq9K03 (K:347-469)
1f: CATH_2eq9B03 (B:347-469)
1g: CATH_2eq9D03 (D:347-469)
1h: CATH_2eq9E03 (E:347-469)
2a: CATH_2eq9A01 (A:7-151,A:273-345)
2b: CATH_2eq9G01 (G:7-151,G:273-345)
2c: CATH_2eq9H01 (H:7-151,H:273-345)
2d: CATH_2eq9J01 (J:7-151,J:273-345)
2e: CATH_2eq9K01 (K:7-151,K:273-345)
2f: CATH_2eq9A02 (A:152-272)
2g: CATH_2eq9B02 (B:152-272)
2h: CATH_2eq9D02 (D:152-272)
2i: CATH_2eq9E02 (E:152-272)
2j: CATH_2eq9G02 (G:152-272)
2k: CATH_2eq9H02 (H:152-272)
2l: CATH_2eq9J02 (J:152-272)
2m: CATH_2eq9K02 (K:152-272)
2n: CATH_2eq9B01 (B:7-151,B:273-345)
2o: CATH_2eq9D01 (D:7-151,D:273-345)
2p: CATH_2eq9E01 (E:7-151,E:273-345)
3a: CATH_2eq9C00 (C:129-168)
3b: CATH_2eq9F00 (F:129-168)
3c: CATH_2eq9I00 (I:129-168)
3d: CATH_2eq9L00 (L:129-168)
View:
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Classes
(
)
(
)
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(
)
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(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Enolase-like; domain 1
(252)
Homologous Superfamily
:
[code=3.30.390.30, no name defined]
(99)
Thermus thermophilus hb8. Organism_taxid: 300852. Strain: hb8.
(4)
1a
2eq9A03
A:347-469
1b
2eq9G03
G:347-469
1c
2eq9H03
H:347-469
1d
2eq9J03
J:347-469
1e
2eq9K03
K:347-469
1f
2eq9B03
B:347-469
1g
2eq9D03
D:347-469
1h
2eq9E03
E:347-469
Architecture
:
3-Layer(bba) Sandwich
(528)
Topology
:
FAD/NAD(P)-binding domain
(373)
Homologous Superfamily
:
[code=3.50.50.60, no name defined]
(373)
Thermus thermophilus hb8. Organism_taxid: 300852. Strain: hb8.
(4)
2a
2eq9A01
A:7-151,A:273-345
2b
2eq9G01
G:7-151,G:273-345
2c
2eq9H01
H:7-151,H:273-345
2d
2eq9J01
J:7-151,J:273-345
2e
2eq9K01
K:7-151,K:273-345
2f
2eq9A02
A:152-272
2g
2eq9B02
B:152-272
2h
2eq9D02
D:152-272
2i
2eq9E02
E:152-272
2j
2eq9G02
G:152-272
2k
2eq9H02
H:152-272
2l
2eq9J02
J:152-272
2m
2eq9K02
K:152-272
2n
2eq9B01
B:7-151,B:273-345
2o
2eq9D01
D:7-151,D:273-345
2p
2eq9E01
E:7-151,E:273-345
Class
:
Few Secondary Structures
(1120)
Architecture
:
Irregular
(1120)
Topology
:
Dihydrolipoamide Transferase
(20)
Homologous Superfamily
:
Dihydrolipoamide Transferase
(20)
Thermus thermophilus hb8. Organism_taxid: 300852. Strain: hb8.
(1)
3a
2eq9C00
C:129-168
3b
2eq9F00
F:129-168
3c
2eq9I00
I:129-168
3d
2eq9L00
L:129-168
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Pfam Domains
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Asymmetric Unit 1
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Asym.Unit (606 KB)
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Biol.Unit 1 (156 KB)
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Biol.Unit 3 (158 KB)
Header - Biol.Unit 3
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