PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
No precomputed SNP/Variant structure found.
Calculating the structure may take several minutes.
PLEASE WAIT...
Getting 'PROSITE' information from database.
PLEASE WAIT...
Getting 'Exon' information from database.
2EP6
Asym. Unit
Info
Asym.Unit (698 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
Models
(20 )
Title
:
SOLUTION STRUCTURE OF THE SECOND C2 DOMAIN FROM HUMAN MCTP2 PROTEIN
Authors
:
T. Nagashima, F. Hayashi, S. Yokoyama, Riken Structural Genomics/Proteomics Initiative (Rsgi)
Date
:
29 Mar 07 (Deposition) - 02 Oct 07 (Release) - 24 Feb 09 (Revision)
Method
:
SOLUTION NMR
Resolution
:
NOT APPLICABLE
Chains
:
Asym. Unit : A (20 x)
Keywords
:
Beta Sandwich, Ca2+ Binding, Membrane Binding, Structural Genomics, Nppsfa, National Project On Protein Structural And Functional Analyses, Riken Structural Genomics/Proteomics Initiative, Rsgi, Membrane Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
T. Nagashima, F. Hayashi, S. Yokoyama
Solution Structure Of The Second C2 Domain From Human Mctp2 Protein
To Be Published
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(0, 0)
Info
All Hetero Components
View:
Select:
Label:
Sorry, no Info available
[
close Hetero component info
]
Sites
(0, 0)
Info
All Sites
View:
Select:
Label:
Sorry, no Info available
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available in "Model" view)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: C2 (-|A:99-179|-)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
C2
PS50004
C2 domain profile.
MCTP2_HUMAN
196-276
511-591
358-436
1
-
A:99-179
-
[
close PROSITE info
]
Exons
(5, 5)
Info
All Exons
Exon 1.12 (A:85-87)
Exon 1.13 (A:88-116)
Exon 1.14 (A:116-150)
Exon 1.15 (A:150-184)
Exon 1.16 (A:185-217)
View:
Select:
Label:
All Exon Boundaries
1: Boundary 1.11/1.12
2: Boundary 1.12/1.13
3: Boundary 1.13/1.14
4: Boundary 1.14/1.15
5: Boundary 1.15/1.16
6: Boundary 1.16/1.17
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000357742
1
ENSE00001419592
chr15:
94774951-94775234
284
MCTP2_HUMAN
-
0
0
-
-
1.2a
ENST00000357742
2a
ENSE00002186293
chr15:
94841430-94841959
530
MCTP2_HUMAN
1-155
155
0
-
-
1.3
ENST00000357742
3
ENSE00001668096
chr15:
94857511-94857573
63
MCTP2_HUMAN
156-176
21
0
-
-
1.5
ENST00000357742
5
ENSE00001712368
chr15:
94858758-94858866
109
MCTP2_HUMAN
177-213
37
0
-
-
1.6
ENST00000357742
6
ENSE00001592080
chr15:
94882519-94882661
143
MCTP2_HUMAN
213-260
48
0
-
-
1.7
ENST00000357742
7
ENSE00001749234
chr15:
94883428-94883504
77
MCTP2_HUMAN
261-286
26
0
-
-
1.8
ENST00000357742
8
ENSE00001658264
chr15:
94884042-94884153
112
MCTP2_HUMAN
286-323
38
0
-
-
1.9
ENST00000357742
9
ENSE00001794737
chr15:
94888358-94888393
36
MCTP2_HUMAN
324-335
12
0
-
-
1.10
ENST00000357742
10
ENSE00001621146
chr15:
94899366-94899530
165
MCTP2_HUMAN
336-390
55
0
-
-
1.11
ENST00000357742
11
ENSE00001684063
chr15:
94901711-94901841
131
MCTP2_HUMAN
391-434
44
0
-
-
1.12
ENST00000357742
12
ENSE00000943872
chr15:
94910834-94911020
187
MCTP2_HUMAN
434-496
63
1
A:85-87
3
1.13
ENST00000357742
13
ENSE00001302905
chr15:
94913316-94913409
94
MCTP2_HUMAN
497-528
32
1
A:88-116
29
1.14
ENST00000357742
14
ENSE00000943874
chr15:
94927251-94927353
103
MCTP2_HUMAN
528-562
35
1
A:116-150
35
1.15
ENST00000357742
15
ENSE00000943875
chr15:
94928652-94928754
103
MCTP2_HUMAN
562-596
35
1
A:150-184
35
1.16
ENST00000357742
16
ENSE00000943876
chr15:
94942190-94942291
102
MCTP2_HUMAN
597-630
34
1
A:185-217
33
1.17
ENST00000357742
17
ENSE00000943877
chr15:
94943150-94943224
75
MCTP2_HUMAN
631-655
25
0
-
-
1.18
ENST00000357742
18
ENSE00000943878
chr15:
94945129-94945248
120
MCTP2_HUMAN
656-695
40
0
-
-
1.20
ENST00000357742
20
ENSE00000943879
chr15:
94983405-94983527
123
MCTP2_HUMAN
696-736
41
0
-
-
1.21
ENST00000357742
21
ENSE00000995527
chr15:
94986148-94986189
42
MCTP2_HUMAN
737-750
14
0
-
-
1.22
ENST00000357742
22
ENSE00000995532
chr15:
95001366-95001475
110
MCTP2_HUMAN
751-787
37
0
-
-
1.23
ENST00000357742
23
ENSE00000995528
chr15:
95013562-95013671
110
MCTP2_HUMAN
787-824
38
0
-
-
1.24
ENST00000357742
24
ENSE00000995531
chr15:
95019925-95020022
98
MCTP2_HUMAN
824-856
33
0
-
-
1.25
ENST00000357742
25
ENSE00001423108
chr15:
95022195-95023632
1438
MCTP2_HUMAN
857-878
22
0
-
-
[
close EXON info
]
SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d2ep6a1 (A:92-217)
View:
Select:
Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
C2 domain-like
(198)
Superfamily
:
C2 domain (Calcium/lipid-binding domain, CaLB)
(148)
Family
:
PLC-like (P variant)
(81)
Protein domain
:
Multiple C2 and transmembrane domain-containing protein 2, MCTP2
(1)
Human (Homo sapiens) [TaxId: 9606]
(1)
1a
d2ep6a1
A:92-217
[
close SCOP info
]
CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (698 KB)
Header - Asym.Unit
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
2EP6
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help
