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2EIK
Asym. Unit
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Asym.Unit (684 KB)
Biol.Unit 1 (658 KB)
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(1)
Title
:
CADMIUM ION BINDING STRUCTURE OF BOVINE HEART CYTOCHROME C OXIDASE IN THE FULLY REDUCED STATE
Authors
:
K. Muramoto, K. Hirata, K. Shinzawa-Itoh, S. Yoko-O, E. Yamashita, H. A T. Tsukihara, S. Yoshikawa
Date
:
13 Mar 07 (Deposition) - 29 May 07 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.10
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z
Biol. Unit 1: A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z (1x)
Keywords
:
Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
K. Muramoto, K. Hirata, K. Shinzawa-Itoh, S. Yoko-O, E. Yamashita, H. Aoyama, T. Tsukihara, S. Yoshikawa
A Histidine Residue Acting As A Controlling Site For Dioxygen Reduction And Proton Pumping By Cytochrome C Oxidase
Proc. Natl. Acad. Sci. Usa V. 104 7881 2007
[
close entry info
]
Hetero Components
(17, 66)
Info
All Hetero Components
02a: CARDIOLIPIN (CDLa)
02b: CARDIOLIPIN (CDLb)
02c: CARDIOLIPIN (CDLc)
02d: CARDIOLIPIN (CDLd)
01a: CADMIUM ION (CDa)
01b: CADMIUM ION (CDb)
01c: CADMIUM ION (CDc)
01d: CADMIUM ION (CDd)
01e: CADMIUM ION (CDe)
01f: CADMIUM ION (CDf)
03a: CHOLIC ACID (CHDa)
03b: CHOLIC ACID (CHDb)
03c: CHOLIC ACID (CHDc)
03d: CHOLIC ACID (CHDd)
03e: CHOLIC ACID (CHDe)
03f: CHOLIC ACID (CHDf)
03g: CHOLIC ACID (CHDg)
03h: CHOLIC ACID (CHDh)
05a: DINUCLEAR COPPER ION (CUAa)
05b: DINUCLEAR COPPER ION (CUAb)
04a: COPPER (II) ION (CUa)
05b: COPPER (II) ION (CUb)
06a: DECYL-BETA-D-MALTOPYRANOSIDE (DMUa)
06b: DECYL-BETA-D-MALTOPYRANOSIDE (DMUb)
06c: DECYL-BETA-D-MALTOPYRANOSIDE (DMUc)
06d: DECYL-BETA-D-MALTOPYRANOSIDE (DMUd)
07a: N-FORMYLMETHIONINE (FMEa)
07b: N-FORMYLMETHIONINE (FMEb)
07c: N-FORMYLMETHIONINE (FMEc)
07d: N-FORMYLMETHIONINE (FMEd)
08a: HEME-A (HEAa)
08b: HEME-A (HEAb)
08c: HEME-A (HEAc)
08d: HEME-A (HEAd)
09a: MAGNESIUM ION (MGa)
09b: MAGNESIUM ION (MGb)
10a: SODIUM ION (NAa)
10b: SODIUM ION (NAb)
11a: (1S)-2-{[(2-AMINOETHOXY)(HYDROXY)P... (PEKa)
11b: (1S)-2-{[(2-AMINOETHOXY)(HYDROXY)P... (PEKb)
11c: (1S)-2-{[(2-AMINOETHOXY)(HYDROXY)P... (PEKc)
11d: (1S)-2-{[(2-AMINOETHOXY)(HYDROXY)P... (PEKd)
11e: (1S)-2-{[(2-AMINOETHOXY)(HYDROXY)P... (PEKe)
11f: (1S)-2-{[(2-AMINOETHOXY)(HYDROXY)P... (PEKf)
12a: (1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPY... (PGVa)
12b: (1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPY... (PGVb)
12c: (1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPY... (PGVc)
12d: (1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPY... (PGVd)
12e: (1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPY... (PGVe)
12f: (1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPY... (PGVf)
12g: (1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPY... (PGVg)
12h: (1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPY... (PGVh)
13a: (7R,17E,20E)-4-HYDROXY-N,N,N-TRIME... (PSCa)
13b: (7R,17E,20E)-4-HYDROXY-N,N,N-TRIME... (PSCb)
14a: N-ACETYL-SERINE (SACa)
14b: N-ACETYL-SERINE (SACb)
15a: TRISTEAROYLGLYCEROL (TGLa)
15b: TRISTEAROYLGLYCEROL (TGLb)
15c: TRISTEAROYLGLYCEROL (TGLc)
15d: TRISTEAROYLGLYCEROL (TGLd)
15e: TRISTEAROYLGLYCEROL (TGLe)
15f: TRISTEAROYLGLYCEROL (TGLf)
16a: PHOSPHOTHREONINE (TPOa)
16b: PHOSPHOTHREONINE (TPOb)
17a: ZINC ION (ZNa)
17b: ZINC ION (ZNb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CD
6
Ligand/Ion
CADMIUM ION
2
CDL
4
Ligand/Ion
CARDIOLIPIN
3
CHD
8
Ligand/Ion
CHOLIC ACID
4
CU
2
Ligand/Ion
COPPER (II) ION
5
CUA
2
Ligand/Ion
DINUCLEAR COPPER ION
6
DMU
4
Ligand/Ion
DECYL-BETA-D-MALTOPYRANOSIDE
7
FME
4
Mod. Amino Acid
N-FORMYLMETHIONINE
8
HEA
4
Ligand/Ion
HEME-A
9
MG
2
Ligand/Ion
MAGNESIUM ION
10
NA
2
Ligand/Ion
SODIUM ION
11
PEK
6
Ligand/Ion
(1S)-2-{[(2-AMINOETHOXY)(HYDROXY)PHOSPHORYL]OXY}-1-[(STEAROYLOXY)METHYL]ETHYL (5E,8E,11E,14E)-ICOSA-5,8,11,14-TETRAENOATE
12
PGV
8
Ligand/Ion
(1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL (11E)-OCTADEC-11-ENOATE
13
PSC
2
Ligand/Ion
(7R,17E,20E)-4-HYDROXY-N,N,N-TRIMETHYL-9-OXO-7-[(PALMITOYLOXY)METHYL]-3,5,8-TRIOXA-4-PHOSPHAHEXACOSA-17,20-DIEN-1-AMINIUM 4-OXIDE
14
SAC
2
Mod. Amino Acid
N-ACETYL-SERINE
15
TGL
6
Ligand/Ion
TRISTEAROYLGLYCEROL
16
TPO
2
Mod. Amino Acid
PHOSPHOTHREONINE
17
ZN
2
Ligand/Ion
ZINC ION
[
close Hetero Component info
]
Sites
(58, 58)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
30: DC3 (SOFTWARE)
31: DC4 (SOFTWARE)
32: DC5 (SOFTWARE)
33: DC6 (SOFTWARE)
34: DC7 (SOFTWARE)
35: DC8 (SOFTWARE)
36: DC9 (SOFTWARE)
37: EC1 (SOFTWARE)
38: EC2 (SOFTWARE)
39: EC3 (SOFTWARE)
40: EC4 (SOFTWARE)
41: EC5 (SOFTWARE)
42: EC6 (SOFTWARE)
43: EC7 (SOFTWARE)
44: EC8 (SOFTWARE)
45: EC9 (SOFTWARE)
46: FC1 (SOFTWARE)
47: FC2 (SOFTWARE)
48: FC3 (SOFTWARE)
49: FC4 (SOFTWARE)
50: FC5 (SOFTWARE)
51: FC6 (SOFTWARE)
52: FC7 (SOFTWARE)
53: FC8 (SOFTWARE)
54: FC9 (SOFTWARE)
55: GC1 (SOFTWARE)
56: GC2 (SOFTWARE)
57: GC3 (SOFTWARE)
58: GC4 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
HIS A:240 , HIS A:290 , HIS A:291
BINDING SITE FOR RESIDUE CU A 517
02
AC2
SOFTWARE
HIS A:368 , ASP A:369 , GLU B:198 , HOH B:2031 , HOH B:2032 , HOH B:2033
BINDING SITE FOR RESIDUE MG A 518
03
AC3
SOFTWARE
GLU A:40 , GLY A:45 , SER A:441 , HOH A:2026
BINDING SITE FOR RESIDUE NA A 519
04
AC4
SOFTWARE
HIS A:503 , HOH A:2077 , HOH A:2078 , HIS L:2
BINDING SITE FOR RESIDUE CD A 603
05
AC5
SOFTWARE
MET A:28 , THR A:31 , SER A:34 , ILE A:37 , ARG A:38 , TYR A:54 , VAL A:58 , HIS A:61 , ALA A:62 , MET A:65 , VAL A:70 , ILE A:73 , GLY A:125 , TRP A:126 , TYR A:371 , PHE A:377 , HIS A:378 , SER A:382 , PHE A:425 , GLN A:428 , ARG A:438 , ARG A:439 , VAL A:465 , HOH A:2005 , HOH A:2036 , HOH A:2072
BINDING SITE FOR RESIDUE HEA A 515
06
AC6
SOFTWARE
TRP A:126 , TRP A:236 , VAL A:243 , TYR A:244 , ILE A:247 , HIS A:290 , HIS A:291 , THR A:309 , ILE A:312 , THR A:316 , GLY A:317 , GLY A:352 , GLY A:355 , ILE A:356 , LEU A:358 , ALA A:359 , ASP A:364 , HIS A:368 , VAL A:373 , HIS A:376 , PHE A:377 , VAL A:380 , LEU A:381 , ARG A:438 , HOH A:2007 , HOH A:2016 , HOH A:2034 , HOH A:2044 , ILE B:34 , PRO B:69
BINDING SITE FOR RESIDUE HEA A 516
07
AC7
SOFTWARE
ASN A:422 , PHE A:430 , LEU A:433 , LEU B:7 , LEU B:28 , VAL B:31 , SER B:35 , LEU B:39 , HOH B:4798 , ARG I:43 , HOH I:2383
BINDING SITE FOR RESIDUE TGL A 521
08
AC8
SOFTWARE
TRP A:334 , LEU A:342 , GLY A:343 , LYS A:411 , PHE A:414 , ILE B:42 , HOH B:2360 , ARG D:73 , SER D:74 , GLU D:77 , TRP D:78 , ILE D:89
BINDING SITE FOR RESIDUE TGL A 523
09
AC9
SOFTWARE
ASN A:406 , THR A:408 , TRP A:409 , HOH A:4284 , HOH A:4619 , ALA D:84 , PHE D:87 , HIS K:10 , GLN M:15 , ALA M:16 , LEU M:19 , SER M:20 , HOH M:2160
BINDING SITE FOR RESIDUE PGV A 524
10
BC1
SOFTWARE
PHE A:94 , PRO A:95 , ARG A:96 , MET A:97 , HOH A:2145 , HOH A:2233 , HIS C:9 , THR C:28 , ASN C:50 , TRP C:57 , TRP C:58 , GLU C:64 , HIS C:71 , LEU C:79 , GLY C:82
BINDING SITE FOR RESIDUE PGV A 604
11
BC2
SOFTWARE
HIS B:161 , CYS B:196 , GLU B:198 , CYS B:200 , HIS B:204 , MET B:207
BINDING SITE FOR RESIDUE CUA B 228
12
BC3
SOFTWARE
PHE A:321 , HOH A:4289 , ILE B:41 , HIS B:52 , MET B:56 , ASP B:57 , VAL B:61 , TRP B:65 , HIS E:5 , ASP E:8 , PHE E:11 , LEU E:41 , ARG I:10 , ALA I:14
BINDING SITE FOR RESIDUE PSC B 230
13
BC4
SOFTWARE
MET A:271 , GLN B:59 , GLU B:62 , THR B:63 , HOH B:2112 , HOH B:2382 , HOH B:4901 , PEK P:1265 , ARG T:14 , GLY T:22 , HOH T:3309
BINDING SITE FOR RESIDUE CHD B 1086
14
BC5
SOFTWARE
TRP C:34 , MET C:40 , HOH C:4375 , TRP G:62 , GLY G:63
BINDING SITE FOR RESIDUE DMU C 272
15
BC6
SOFTWARE
HIS C:148 , MET C:152 , HIS C:232 , GLU C:236 , HOH C:2027 , HOH C:2409
BINDING SITE FOR RESIDUE CD C 262
16
BC7
SOFTWARE
HIS A:233 , ASP A:300 , THR A:301 , TYR A:304 , HOH A:4827 , TRP C:99 , HIS C:103 , PGV C:268 , HOH C:4245 , HOH C:4770
BINDING SITE FOR RESIDUE CHD C 525
17
BC8
SOFTWARE
HIS A:151 , TRP C:34 , TYR C:181 , TYR C:182 , ALA C:184 , PHE C:186 , THR C:187 , ILE C:188 , PHE C:198 , GLY C:202 , TRP G:62 , THR G:68 , PHE G:69 , PHE G:70 , HIS G:71 , ASN G:76 , HOH G:2261
BINDING SITE FOR RESIDUE PEK C 264
18
BC9
SOFTWARE
LYS C:157 , HIS C:158 , THR C:168 , TYR C:172 , HOH C:4303 , ALA F:1 , LYS G:5 , ARG G:17 , PHE G:21 , GLY G:22 , CDL G:269 , TRP N:275 , SER N:279 , GLN O:59 , THR O:66 , CHD O:229
BINDING SITE FOR RESIDUE PEK C 265
19
CC1
SOFTWARE
MET C:54 , TRP C:58 , VAL C:61 , SER C:65 , THR C:66 , HIS C:207 , ILE C:210 , THR C:213 , PHE C:214 , ARG C:221 , HIS C:226 , PHE C:227 , THR C:228 , HIS C:231 , HIS C:232 , PHE C:233 , GLY C:234 , CDL C:270 , HOH C:2221 , HOH C:2357 , HOH F:2137 , HOH F:4189
BINDING SITE FOR RESIDUE PGV C 267
20
CC2
SOFTWARE
TRP C:99 , TYR C:102 , HIS C:103 , CHD C:525 , ASN H:24 , HOH H:4415 , CDL T:1269
BINDING SITE FOR RESIDUE PGV C 268
21
CC3
SOFTWARE
MET C:51 , MET C:54 , TYR C:55 , TRP C:58 , ARG C:59 , ARG C:63 , PHE C:67 , THR C:213 , LYS C:224 , HIS C:226 , PGV C:267 , HOH C:4115 , HOH C:4569 , HOH C:4722 , LYS J:8 , THR J:27
BINDING SITE FOR RESIDUE CDL C 270
22
CC4
SOFTWARE
ARG C:156 , LEU C:160 , PHE C:164 , LEU C:223 , HOH C:4708 , PHE J:1
BINDING SITE FOR RESIDUE CHD C 271
23
CC5
SOFTWARE
HIS E:78 , GLU E:80 , HOH E:4904
BINDING SITE FOR RESIDUE CD E 606
24
CC6
SOFTWARE
CYS F:60 , CYS F:62 , CYS F:82 , CYS F:85
BINDING SITE FOR RESIDUE ZN F 99
25
CC7
SOFTWARE
LEU C:127 , LEU C:131 , LEU C:250 , VAL C:254 , PEK C:265 , LEU G:23 , SER G:27 , LEU G:30 , CYS G:31 , ASN G:34 , LEU G:37 , HIS G:38 , ARG G:42 , PHE N:282 , ILE N:286 , ASP N:300 , TYR N:304 , SER N:307 , ILE N:311 , ALA O:77 , LEU O:78 , LEU O:81 , TYR O:85 , PGV P:1268
BINDING SITE FOR RESIDUE CDL G 269
26
CC8
SOFTWARE
SER G:2 , ALA G:3 , LYS G:5 , GLY G:6 , HIS G:8 , HOH G:4865 , LYS P:77 , ARG P:80 , TYR P:81 , ILE P:84 , PHE P:98 , TRP P:240 , PHE P:244 , VAL P:247
BINDING SITE FOR RESIDUE PEK G 1263
27
CC9
SOFTWARE
TYR J:32 , ARG J:33 , MET J:36 , LEU J:40 , HOH J:4808
BINDING SITE FOR RESIDUE CHD J 60
28
DC1
SOFTWARE
THR A:17 , LEU A:20 , LEU A:21 , PHE A:22 , TRP A:25 , LEU A:113 , PHE A:400 , ILE A:472 , ILE L:11 , PRO L:12 , PHE L:13 , SER L:14 , ARG L:20 , MET L:24 , PHE L:28 , PHE L:29
BINDING SITE FOR RESIDUE TGL L 522
29
DC2
SOFTWARE
TRP D:98 , LEU M:27 , LEU M:28 , GLY M:31 , TRP M:32 , TYR M:35 , HIS M:36
BINDING SITE FOR RESIDUE DMU M 526
30
DC3
SOFTWARE
HIS N:240 , HIS N:290 , HIS N:291
BINDING SITE FOR RESIDUE CU N 517
31
DC4
SOFTWARE
HIS N:368 , ASP N:369 , GLU O:198 , HOH O:3031 , HOH O:3032 , HOH O:3033
BINDING SITE FOR RESIDUE MG N 1518
32
DC5
SOFTWARE
GLU N:40 , GLY N:45 , SER N:441 , HOH N:3026
BINDING SITE FOR RESIDUE NA N 1519
33
DC6
SOFTWARE
HIS N:503 , HOH N:3077 , HOH N:3078 , HIS Y:2
BINDING SITE FOR RESIDUE CD N 1603
34
DC7
SOFTWARE
SER N:34 , ILE N:37 , ARG N:38 , TYR N:54 , VAL N:58 , HIS N:61 , ALA N:62 , MET N:65 , VAL N:70 , GLY N:125 , TRP N:126 , TYR N:371 , PHE N:377 , HIS N:378 , SER N:382 , PHE N:425 , GLN N:428 , ARG N:438 , ARG N:439 , VAL N:465 , HOH N:3005 , HOH N:3036 , HOH N:3072
BINDING SITE FOR RESIDUE HEA N 515
35
DC8
SOFTWARE
TRP N:126 , TRP N:236 , VAL N:243 , TYR N:244 , ILE N:247 , HIS N:290 , HIS N:291 , THR N:309 , THR N:316 , GLY N:317 , GLY N:352 , GLY N:355 , ILE N:356 , LEU N:358 , ALA N:359 , ASP N:364 , HIS N:368 , VAL N:373 , HIS N:376 , PHE N:377 , VAL N:380 , LEU N:381 , ARG N:438 , HOH N:3007 , HOH N:3016 , HOH N:3034 , HOH N:3044 , PRO O:69 , LEU O:73
BINDING SITE FOR RESIDUE HEA N 516
36
DC9
SOFTWARE
ASN N:422 , HIS N:429 , PHE N:430 , LEU N:433 , HOH N:4191 , LEU O:7 , LEU O:28 , VAL O:31 , PHE O:32 , SER O:35 , LEU O:39 , HOH Q:3383 , ARG V:43
BINDING SITE FOR RESIDUE TGL N 1521
37
EC1
SOFTWARE
ASN N:406 , THR N:408 , TRP N:409 , ALA Q:84 , PHE Q:87 , HIS X:10 , GLN Z:15 , ALA Z:16 , LEU Z:19 , SER Z:20 , HOH Z:3160 , HOH Z:4895
BINDING SITE FOR RESIDUE PGV N 1524
38
EC2
SOFTWARE
PHE N:94 , PRO N:95 , ARG N:96 , MET N:97 , MET N:100 , PHE N:148 , HOH N:3145 , HOH N:3233 , HIS P:9 , THR P:28 , ASN P:50 , TRP P:57 , TRP P:58 , GLU P:64 , HIS P:71 , LEU P:79 , GLY P:82
BINDING SITE FOR RESIDUE PGV N 1266
39
EC3
SOFTWARE
HIS O:161 , CYS O:196 , GLU O:198 , CYS O:200 , HIS O:204 , MET O:207
BINDING SITE FOR RESIDUE CUA O 228
40
EC4
SOFTWARE
PEK C:265 , ARG G:14 , ARG G:17 , GLY G:22 , HOH G:2309 , MET N:271 , TRP N:275 , GLN O:59 , GLU O:62 , THR O:63 , HOH O:3112 , HOH O:3382
BINDING SITE FOR RESIDUE CHD O 229
41
EC5
SOFTWARE
PHE N:321 , ILE O:41 , HIS O:52 , MET O:56 , ASP O:57 , VAL O:61 , TRP O:65 , HOH O:4783 , ASP R:8 , PHE R:11 , ASP R:40 , LEU R:41 , ARG V:10 , ALA V:14
BINDING SITE FOR RESIDUE PSC O 1230
42
EC6
SOFTWARE
TRP P:34 , MET P:40 , PEK P:1264 , SER T:61 , TRP T:62 , GLY T:63
BINDING SITE FOR RESIDUE DMU P 1272
43
EC7
SOFTWARE
HIS P:148 , MET P:152 , HIS P:232 , GLU P:236 , HOH P:3027 , HOH P:3409
BINDING SITE FOR RESIDUE CD P 1262
44
EC8
SOFTWARE
GLU N:506 , HIS P:3
BINDING SITE FOR RESIDUE CD P 1609
45
EC9
SOFTWARE
HIS N:233 , ASP N:300 , THR N:301 , TYR N:304 , TRP P:99 , HIS P:103 , PGV P:1268
BINDING SITE FOR RESIDUE CHD P 1525
46
FC1
SOFTWARE
HIS N:151 , TYR P:181 , TYR P:182 , ALA P:184 , PHE P:186 , THR P:187 , ILE P:188 , PHE P:198 , GLY P:202 , DMU P:1272 , HOH P:4866 , TRP T:62 , THR T:68 , PHE T:69 , PHE T:70 , ASN T:76
BINDING SITE FOR RESIDUE PEK P 1264
47
FC2
SOFTWARE
TRP A:275 , SER A:279 , GLN B:59 , CHD B:1086 , HOH B:4901 , LYS P:157 , HIS P:158 , THR P:168 , TYR P:172 , ALA S:1 , ARG T:17 , PHE T:21 , GLY T:22 , CDL T:1269 , HOH T:4510
BINDING SITE FOR RESIDUE PEK P 1265
48
FC3
SOFTWARE
TRP P:58 , VAL P:61 , SER P:65 , THR P:66 , GLU P:90 , HIS P:207 , ILE P:210 , THR P:213 , PHE P:214 , ARG P:221 , HIS P:226 , PHE P:227 , THR P:228 , HIS P:231 , HIS P:232 , PHE P:233 , GLY P:234 , CDL P:1270 , HOH P:3221 , HOH P:3357 , HOH S:3137
BINDING SITE FOR RESIDUE PGV P 1267
49
FC4
SOFTWARE
CDL G:269 , TRP P:99 , TYR P:102 , HIS P:103 , CHD P:1525 , HOH P:4252 , ASN U:24 , HOH U:4194
BINDING SITE FOR RESIDUE PGV P 1268
50
FC5
SOFTWARE
MET P:51 , TYR P:55 , TRP P:58 , ARG P:59 , ILE P:62 , ARG P:63 , PHE P:67 , THR P:213 , LYS P:224 , HIS P:226 , PGV P:1267 , HOH P:4551 , LYS W:8 , THR W:27
BINDING SITE FOR RESIDUE CDL P 1270
51
FC6
SOFTWARE
ARG P:156 , LEU P:160 , PHE P:164 , LEU P:223 , PHE W:1
BINDING SITE FOR RESIDUE CHD P 1271
52
FC7
SOFTWARE
TRP N:334 , LEU N:342 , GLY N:343 , PHE N:414 , LEU O:39 , ILE O:42 , LYS O:49 , HOH O:3360 , ARG Q:73 , SER Q:74 , THR Q:75 , TRP Q:78 , ILE Q:89 , HOH Q:4408 , HOH Q:4816 , HOH V:4756
BINDING SITE FOR RESIDUE TGL Q 1523
53
FC8
SOFTWARE
CYS S:60 , CYS S:62 , CYS S:82 , CYS S:85
BINDING SITE FOR RESIDUE ZN S 99
54
FC9
SOFTWARE
LYS C:77 , ARG C:80 , TYR C:81 , ILE C:84 , PHE C:98 , TRP C:240 , PHE C:244 , VAL C:247 , SER T:2 , ALA T:3 , LYS T:5 , GLY T:6 , HIS T:8 , HOH T:4293
BINDING SITE FOR RESIDUE PEK T 263
55
GC1
SOFTWARE
PHE A:282 , ILE A:286 , ASP A:300 , TYR A:304 , SER A:307 , ILE A:311 , ILE B:74 , ALA B:77 , LEU B:78 , LEU B:81 , TYR B:85 , PGV C:268 , HOH C:4770 , LEU P:127 , LEU P:131 , THR P:134 , VAL P:142 , LEU P:250 , TYR P:253 , VAL P:254 , PEK P:1265 , LEU T:23 , SER T:27 , LEU T:30 , CYS T:31 , LEU T:33 , ASN T:34 , LEU T:37 , HIS T:38 , ARG T:42 , HOH T:4424 , HOH T:4821 , HOH T:4870
BINDING SITE FOR RESIDUE CDL T 1269
56
GC2
SOFTWARE
TYR W:32 , ARG W:33 , MET W:36 , LEU W:40 , HOH W:4516 , HOH W:4700
BINDING SITE FOR RESIDUE CHD W 1060
57
GC3
SOFTWARE
THR N:17 , LEU N:18 , LEU N:20 , LEU N:21 , PHE N:22 , TRP N:25 , LEU N:113 , PHE N:400 , ILE N:472 , ILE Y:11 , PRO Y:12 , PHE Y:13 , SER Y:14 , ARG Y:20 , MET Y:24 , PHE Y:28 , PHE Y:29 , HOH Y:4411
BINDING SITE FOR RESIDUE TGL Y 1522
58
GC4
SOFTWARE
TRP Q:98 , LEU Z:27 , LEU Z:28 , TRP Z:32 , TYR Z:35 , HIS Z:36
BINDING SITE FOR RESIDUE DMU Z 1526
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(10, 20)
Info
All PROSITE Patterns/Profiles
01: COX2_TM (B:1-91,O:1-91)
02: COX1 (A:1-514,N:1-514)
03: COX3 (C:4-261,P:4-261)
04: CHCH (H:26-72,U:26-72)
05: COX5B_2 (F:1-98,S:1-98)
06: COX6A (G:55-72,T:55-72)
07: COX2_CUA (B:92-225,O:92-225)
08: COX5B_1 (F:69-91,S:69-91)
09: COX2 (B:159-207,O:159-207)
10: COX1_CUB (A:236-291,N:236-291)
;
View:
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Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
COX2_TM
PS50999
Cytochrome oxidase subunit II transmembrane region profile.
COX2_BOVIN
1-91
2
B:1-91
O:1-91
2
COX1
PS50855
Cytochrome oxidase subunit I profile.
COX1_BOVIN
1-514
2
A:1-514
N:1-514
3
COX3
PS50253
Heme-copper oxidase subunit III family profile.
COX3_BOVIN
4-261
2
C:4-261
P:4-261
4
CHCH
PS51808
Coiled coil-helix-coiled coil-helix (CHCH) domain profile.
CX6B1_BOVIN
27-73
2
H:26-72
U:26-72
5
COX5B_2
PS51359
Cytochrome c oxidase subunit Vb, zinc binding domain profile.
COX5B_BOVIN
32-129
2
F:1-98
S:1-98
6
COX6A
PS01329
Cytochrome c oxidase subunit VIa signature.
CX6A2_BOVIN
67-84
2
G:55-72
T:55-72
7
COX2_CUA
PS50857
Cytochrome oxidase subunit II copper A binding domain profile.
COX2_BOVIN
92-225
2
B:92-225
O:92-225
8
COX5B_1
PS00848
Cytochrome c oxidase subunit Vb, zinc binding region signature.
COX5B_BOVIN
100-122
2
F:69-91
S:69-91
9
COX2
PS00078
CO II and nitrous oxide reductase dinuclear copper centers signature.
COX2_BOVIN
159-207
2
B:159-207
O:159-207
10
COX1_CUB
PS00077
Heme-copper oxidase catalytic subunit, copper B binding region signature.
COX1_BOVIN
236-291
2
A:236-291
N:236-291
[
close PROSITE info
]
Exons
(11, 22)
Info
All Exons
Exon 1.2 (I:1-36 | V:1-36)
Exon 1.3 (I:37-73 | V:37-73)
Exon 2.2 (J:1-13 | W:1-13)
Exon 2.3 (J:14-42 | W:14-42)
Exon 2.4 (J:42-58 | W:42-58)
Exon 3.2 (E:5-32 | R:5-32)
Exon 3.3 (E:32-72 | R:32-72)
Exon 3.4 (E:73-109 | R:73-109)
Exon 4.1 (G:1-13 | T:1-13)
Exon 4.2 (G:13-58 | T:13-58)
Exon 4.3 (G:59-84 | T:59-84)
View:
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All Exon Boundaries
01: Boundary 1.1/1.2
02: Boundary 1.2/1.3
03: Boundary 1.3/1.4
04: Boundary 2.1/2.2
05: Boundary 2.2/2.3
06: Boundary 2.3/2.4
07: Boundary 2.4/-
08: Boundary 3.1/3.2
09: Boundary 3.2/3.3
10: Boundary 3.3/3.4
11: Boundary 3.4/3.5
12: Boundary -/4.1
13: Boundary 4.1/4.2
14: Boundary 4.2/4.3
15: Boundary 4.3/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENSBTAT00000018778
1
ENSBTAE00000392730
chr14:
62538824-62538908
85
COX6C_BOVIN
-
0
0
-
-
1.2
ENSBTAT00000018778
2
ENSBTAE00000152930
chr14:
62539837-62539968
132
COX6C_BOVIN
1-37
37
2
I:1-36
V:1-36
36
36
1.3
ENSBTAT00000018778
3
ENSBTAE00000152932
chr14:
62540912-62541039
128
COX6C_BOVIN
38-74
37
2
I:37-73
V:37-73
37
37
1.4
ENSBTAT00000018778
4
ENSBTAE00000382779
chr14:
62548625-62548744
120
COX6C_BOVIN
-
0
0
-
-
2.1
ENSBTAT00000019808
1
ENSBTAE00000161251
chr18:
46232862-46232802
61
CX7A1_BOVIN
1-5
5
0
-
-
2.2
ENSBTAT00000019808
2
ENSBTAE00000161252
chr18:
46232104-46232018
87
CX7A1_BOVIN
6-34
29
2
J:1-13
W:1-13
13
13
2.3
ENSBTAT00000019808
3
ENSBTAE00000161253
chr18:
46231883-46231799
85
CX7A1_BOVIN
35-63
29
2
J:14-42
W:14-42
29
29
2.4
ENSBTAT00000019808
4
ENSBTAE00000161254
chr18:
46231418-46231281
138
CX7A1_BOVIN
63-80
18
2
J:42-58
W:42-58
17
17
3.1
ENSBTAT00000022949
1
ENSBTAE00000344359
chr21:
33835267-33835426
160
COX5A_BOVIN
1-36
36
0
-
-
3.2
ENSBTAT00000022949
2
ENSBTAE00000187373
chr21:
33840320-33840436
117
COX5A_BOVIN
36-75
40
2
E:5-32
R:5-32
28
28
3.3
ENSBTAT00000022949
3
ENSBTAE00000187374
chr21:
33842603-33842724
122
COX5A_BOVIN
75-115
41
2
E:32-72
R:32-72
41
41
3.4
ENSBTAT00000022949
4
ENSBTAE00000187376
chr21:
33843979-33844143
165
COX5A_BOVIN
116-152
37
2
E:73-109
R:73-109
37
37
3.5
ENSBTAT00000022949
5
ENSBTAE00000187379
chr21:
33846054-33846214
161
COX5A_BOVIN
-
0
0
-
-
4.1
ENSBTAT00000026002
1
ENSBTAE00000425992
chr25:
29305227-29305113
115
CX6A2_BOVIN
1-25
25
2
G:1-13
T:1-13
13
13
4.2
ENSBTAT00000026002
2
ENSBTAE00000211646
chr25:
29304966-29304830
137
CX6A2_BOVIN
25-70
46
2
G:13-58
T:13-58
46
46
4.3
ENSBTAT00000026002
3
ENSBTAE00000211652
chr25:
29304732-29304604
129
CX6A2_BOVIN
71-97
27
2
G:59-84
T:59-84
26
26
[
close EXON info
]
SCOP Domains
(14, 28)
Info
All SCOP Domains
01a: SCOP_d2eike_ (E:)
01b: SCOP_d2eikr_ (R:)
02a: SCOP_d2eikh_ (H:)
02b: SCOP_d2eiku_ (U:)
03a: SCOP_d2eikb1 (B:91-227)
03b: SCOP_d2eiko1 (O:91-227)
04a: SCOP_d2eika_ (A:)
04b: SCOP_d2eikn_ (N:)
05a: SCOP_d2eikc_ (C:)
05b: SCOP_d2eikp_ (P:)
06a: SCOP_d2eikd_ (D:)
06b: SCOP_d2eikq_ (Q:)
07a: SCOP_d2eikg_ (G:)
07b: SCOP_d2eikt_ (T:)
08a: SCOP_d2eiki_ (I:)
08b: SCOP_d2eikv_ (V:)
09a: SCOP_d2eikj_ (J:)
09b: SCOP_d2eikw_ (W:)
10a: SCOP_d2eikk_ (K:)
10b: SCOP_d2eikx_ (X:)
11a: SCOP_d2eikl_ (L:)
11b: SCOP_d2eiky_ (Y:)
12a: SCOP_d2eikm_ (M:)
12b: SCOP_d2eikz_ (Z:)
13a: SCOP_d2eikb2 (B:1-90)
13b: SCOP_d2eiko2 (O:1-90)
14a: SCOP_d2eikf_ (F:)
14b: SCOP_d2eiks_ (S:)
View:
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Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
alpha-alpha superhelix
(690)
Superfamily
:
Cytochrome c oxidase subunit E
(25)
Family
:
Cytochrome c oxidase subunit E
(25)
Protein domain
:
Cytochrome c oxidase subunit E
(24)
Cow (Bos taurus) [TaxId: 9913]
(24)
01a
d2eike_
E:
01b
d2eikr_
R:
Fold
:
Cytochrome c oxidase subunit h
(26)
Superfamily
:
Cytochrome c oxidase subunit h
(26)
Family
:
Cytochrome c oxidase subunit h
(26)
Protein domain
:
automated matches
(18)
Cow (Bos taurus) [TaxId: 9913]
(18)
02a
d2eikh_
H:
02b
d2eiku_
U:
Class
:
All beta proteins
(24004)
Fold
:
Cupredoxin-like
(545)
Superfamily
:
Cupredoxins
(543)
Family
:
Periplasmic domain of cytochrome c oxidase subunit II
(70)
Protein domain
:
Cytochrome c oxidase
(62)
Cow (Bos taurus) [TaxId: 9913]
(24)
03a
d2eikb1
B:91-227
03b
d2eiko1
O:91-227
Class
:
Membrane and cell surface proteins and peptides
(2046)
Fold
:
Cytochrome c oxidase subunit I-like
(65)
Superfamily
:
Cytochrome c oxidase subunit I-like
(65)
Family
:
Cytochrome c oxidase subunit I-like
(65)
Protein domain
:
automated matches
(24)
Cow (Bos taurus) [TaxId: 9913]
(18)
04a
d2eika_
A:
04b
d2eikn_
N:
Fold
:
Cytochrome c oxidase subunit III-like
(29)
Superfamily
:
Cytochrome c oxidase subunit III-like
(29)
Family
:
Cytochrome c oxidase subunit III-like
(29)
Protein domain
:
Mitochondrial cytochrome c oxidase, subunit III
(25)
Cow (Bos taurus) [TaxId: 9913]
(25)
05a
d2eikc_
C:
05b
d2eikp_
P:
Fold
:
Single transmembrane helix
(568)
Superfamily
:
Mitochondrial cytochrome c oxidase subunit IV
(26)
Family
:
Mitochondrial cytochrome c oxidase subunit IV
(26)
Protein domain
:
automated matches
(18)
Cow (Bos taurus) [TaxId: 9913]
(18)
06a
d2eikd_
D:
06b
d2eikq_
Q:
Superfamily
:
Mitochondrial cytochrome c oxidase subunit VIa
(25)
Family
:
Mitochondrial cytochrome c oxidase subunit VIa
(25)
Protein domain
:
Mitochondrial cytochrome c oxidase subunit VIa
(24)
Cow (Bos taurus) [TaxId: 9913]
(24)
07a
d2eikg_
G:
07b
d2eikt_
T:
Superfamily
:
Mitochondrial cytochrome c oxidase subunit VIc
(25)
Family
:
Mitochondrial cytochrome c oxidase subunit VIc
(25)
Protein domain
:
Mitochondrial cytochrome c oxidase subunit VIc
(25)
Cow (Bos taurus) [TaxId: 9913]
(25)
08a
d2eiki_
I:
08b
d2eikv_
V:
Superfamily
:
Mitochondrial cytochrome c oxidase subunit VIIa
(25)
Family
:
Mitochondrial cytochrome c oxidase subunit VIIa
(25)
Protein domain
:
Mitochondrial cytochrome c oxidase subunit VIIa
(24)
Cow (Bos taurus) [TaxId: 9913]
(24)
09a
d2eikj_
J:
09b
d2eikw_
W:
Superfamily
:
Mitochondrial cytochrome c oxidase subunit VIIb
(26)
Family
:
Mitochondrial cytochrome c oxidase subunit VIIb
(26)
Protein domain
:
automated matches
(18)
Cow (Bos taurus) [TaxId: 9913]
(18)
10a
d2eikk_
K:
10b
d2eikx_
X:
Superfamily
:
Mitochondrial cytochrome c oxidase subunit VIIc (aka VIIIa)
(25)
Family
:
Mitochondrial cytochrome c oxidase subunit VIIc (aka VIIIa)
(25)
Protein domain
:
Mitochondrial cytochrome c oxidase subunit VIIc (aka VIIIa)
(24)
Cow (Bos taurus) [TaxId: 9913]
(24)
11a
d2eikl_
L:
11b
d2eiky_
Y:
Superfamily
:
Mitochondrial cytochrome c oxidase subunit VIIIb (aka IX)
(26)
Family
:
Mitochondrial cytochrome c oxidase subunit VIIIb (aka IX)
(26)
Protein domain
:
automated matches
(18)
Cow (Bos taurus) [TaxId: 9913]
(18)
12a
d2eikm_
M:
12b
d2eikz_
Z:
Fold
:
Transmembrane helix hairpin
(84)
Superfamily
:
Cytochrome c oxidase subunit II-like, transmembrane region
(66)
Family
:
Cytochrome c oxidase subunit II-like, transmembrane region
(57)
Protein domain
:
Mitochondrial cytochrome c oxidase, subunit II
(24)
Cow (Bos taurus) [TaxId: 9913]
(24)
13a
d2eikb2
B:1-90
13b
d2eiko2
O:1-90
Class
:
Small proteins
(3458)
Fold
:
Rubredoxin-like
(572)
Superfamily
:
Rubredoxin-like
(127)
Family
:
Cytochrome c oxidase Subunit F
(25)
Protein domain
:
Cytochrome c oxidase Subunit F
(24)
Cow (Bos taurus) [TaxId: 9913]
(24)
14a
d2eikf_
F:
14b
d2eiks_
S:
[
close SCOP info
]
CATH Domains
(15, 30)
Info
all CATH domains
01a: CATH_2eikG00 (G:1-84)
01b: CATH_2eikT00 (T:1-84)
02a: CATH_2eikI00 (I:2-73)
02b: CATH_2eikV00 (V:2-73)
03a: CATH_2eikJ00 (J:1-58)
03b: CATH_2eikW00 (W:1-58)
04a: CATH_2eikK00 (K:6-54)
04b: CATH_2eikX00 (X:6-54)
05a: CATH_2eikL00 (L:2-47)
05b: CATH_2eikY00 (Y:2-47)
06a: CATH_2eikM00 (M:1-43)
06b: CATH_2eikZ00 (Z:1-43)
07a: CATH_2eikE00 (E:5-109)
07b: CATH_2eikR00 (R:5-109)
08a: CATH_2eikH00 (H:7-85)
08b: CATH_2eikU00 (U:7-85)
09a: CATH_2eikD00 (D:4-147)
09b: CATH_2eikQ00 (Q:4-147)
10a: CATH_2eikC01 (C:3-70)
10b: CATH_2eikP01 (P:3-70)
11a: CATH_2eikB01 (B:2-91)
11b: CATH_2eikO01 (O:2-91)
12a: CATH_2eikA00 (A:2-514)
12b: CATH_2eikN00 (N:2-514)
13a: CATH_2eikC02 (C:71-261)
13b: CATH_2eikP02 (P:71-261)
14a: CATH_2eikF00 (F:1-98)
14b: CATH_2eikS00 (S:1-98)
15a: CATH_2eikB02 (B:92-227)
15b: CATH_2eikO02 (O:92-227)
View:
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Label:
Classes
(
)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Few Secondary Structures
(1120)
Architecture
:
Irregular
(1120)
Topology
:
Cytochrome C Oxidase; Chain G
(22)
Homologous Superfamily
:
Cytochrome C Oxidase, chain G
(22)
Cattle (Bos taurus)
(15)
01a
2eikG00
G:1-84
01b
2eikT00
T:1-84
Topology
:
Cytochrome C Oxidase; Chain I
(22)
Homologous Superfamily
:
Cytochrome C Oxidase, chain I
(22)
Cattle (Bos taurus)
(15)
02a
2eikI00
I:2-73
02b
2eikV00
V:2-73
Topology
:
Cytochrome C Oxidase; Chain J
(22)
Homologous Superfamily
:
Cytochrome C Oxidase, chain J
(22)
Cattle (Bos taurus)
(15)
03a
2eikJ00
J:1-58
03b
2eikW00
W:1-58
Topology
:
Cytochrome C Oxidase; Chain K
(22)
Homologous Superfamily
:
Cytochrome C Oxidase, chain K
(22)
Cattle (Bos taurus)
(15)
04a
2eikK00
K:6-54
04b
2eikX00
X:6-54
Topology
:
Cytochrome C Oxidase; Chain L
(22)
Homologous Superfamily
:
Cytochrome C Oxidase, chain L
(22)
Cattle (Bos taurus)
(15)
05a
2eikL00
L:2-47
05b
2eikY00
Y:2-47
Topology
:
Cytochrome C Oxidase; Chain M
(30)
Homologous Superfamily
:
Cytochrome C Oxidase, chain M
(29)
Cattle (Bos taurus)
(15)
06a
2eikM00
M:1-43
06b
2eikZ00
Z:1-43
Class
:
Mainly Alpha
(13335)
Architecture
:
Alpha Horseshoe
(399)
Topology
:
Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat
(320)
Homologous Superfamily
:
[code=1.25.40.40, no name defined]
(22)
Cattle (Bos taurus)
(15)
07a
2eikE00
E:5-109
07b
2eikR00
R:5-109
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Arc Repressor Mutant, subunit A
(1030)
Homologous Superfamily
:
Cytochrome C oxidase subunit h
(22)
Cattle (Bos taurus)
(15)
08a
2eikH00
H:7-85
08b
2eikU00
U:7-85
Topology
:
Cytochrome C Oxidase; Chain D
(22)
Homologous Superfamily
:
Cytochrome C Oxidase, chain D
(22)
Cattle (Bos taurus)
(15)
09a
2eikD00
D:4-147
09b
2eikQ00
Q:4-147
Topology
:
Helix Hairpins
(718)
Homologous Superfamily
:
[code=1.10.287.70, no name defined]
(106)
Cattle (Bos taurus)
(15)
10a
2eikC01
C:3-70
10b
2eikP01
P:3-70
Homologous Superfamily
:
[code=1.10.287.90, no name defined]
(33)
Cattle (Bos taurus)
(15)
11a
2eikB01
B:2-91
11b
2eikO01
O:2-91
Architecture
:
Up-down Bundle
(3216)
Topology
:
Cytochrome C Oxidase; Chain A
(41)
Homologous Superfamily
:
Cytochrome C Oxidase, chain A
(41)
Cattle (Bos taurus)
(15)
12a
2eikA00
A:2-514
12b
2eikN00
N:2-514
Topology
:
Four Helix Bundle (Hemerythrin (Met), subunit A)
(300)
Homologous Superfamily
:
[code=1.20.120.80, no name defined]
(26)
Cattle (Bos taurus)
(15)
13a
2eikC02
C:71-261
13b
2eikP02
P:71-261
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Cytochrome C Oxidase; Chain F
(22)
Homologous Superfamily
:
Cytochrome C Oxidase, chain F
(22)
Cattle (Bos taurus)
(15)
14a
2eikF00
F:1-98
14b
2eikS00
S:1-98
Topology
:
Immunoglobulin-like
(3897)
Homologous Superfamily
:
Cupredoxins - blue copper proteins
(420)
Cattle (Bos taurus)
(16)
15a
2eikB02
B:92-227
15b
2eikO02
O:92-227
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