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2EH9
Biol. Unit 1
Info
Asym.Unit (24 KB)
Biol.Unit 1 (20 KB)
Biol.Unit 2 (40 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE HBAF250B AT-RICH INTERACTION DOMAIN (ARID)
Authors
:
H. Niwa, A. Shimada, S. Yokoyama, Riken Structural Genomics/Proteo Initiative (Rsgi)
Date
:
05 Mar 07 (Deposition) - 11 Mar 08 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.00
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Biol. Unit 2: A (2x)
Keywords
:
Dna-Binding Domain, Structural Genomics, Nppsfa, National Project On Protein Structural And Functional Analyses, Riken Structural Genomics/Proteomics Initiative, Rsgi, Dna Binding Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. Shimada, H. Niwa, S. Yokoyama
Crystal Structure Of The Hbaf250B At-Rich Interaction Domai (Arid)
To Be Published
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Hetero Components
(1, 1)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
1b: CHLORIDE ION (CLb)
1c: CHLORIDE ION (CLc)
2a: SELENOMETHIONINE (MSEa)
3a: ZINC ION (ZNa)
3b: ZINC ION (ZNb)
3c: ZINC ION (ZNc)
3d: ZINC ION (ZNd)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CL
-1
Ligand/Ion
CHLORIDE ION
2
MSE
1
Mod. Amino Acid
SELENOMETHIONINE
3
ZN
-1
Ligand/Ion
ZINC ION
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Sites
(7, 7)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
CYS A:53 , GLU A:56
BINDING SITE FOR RESIDUE ZN A 201
2
AC2
SOFTWARE
CYS A:53 , GLU A:56
BINDING SITE FOR RESIDUE ZN A 202
3
AC3
SOFTWARE
GLU A:29 , LYS A:89 , GLU A:108
BINDING SITE FOR RESIDUE ZN A 203
4
AC4
SOFTWARE
ASP A:21 , CYS A:101 , ARG A:105 , HOH A:208
BINDING SITE FOR RESIDUE ZN A 204
5
AC5
SOFTWARE
CYS A:53 , GLU A:56
BINDING SITE FOR RESIDUE CL A 205
6
AC6
SOFTWARE
GLU A:56 , ASN A:75 , LEU A:76
BINDING SITE FOR RESIDUE CL A 206
7
AC7
SOFTWARE
GLU A:29 , ASN A:64 , LYS A:89 , HOH A:222
BINDING SITE FOR RESIDUE CL A 207
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SAPs(SNPs)/Variants
(1, 1)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
1: VAR_067678 (V52I, chain A, )
View:
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Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_067678
V
1092
I
ARI1B_HUMAN
Polymorphism
---
A
V
52
I
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: ARID (A:13-104)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ARID
PS51011
ARID domain profile.
ARI1B_HUMAN
1053-1144
1
A:13-104
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d2eh9a_ (A:)
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Classes
(
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)
Folds
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)
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)
(
)
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
DNA/RNA-binding 3-helical bundle
(1299)
Superfamily
:
ARID-like
(14)
Family
:
ARID domain
(12)
Protein domain
:
automated matches
(5)
Human (Homo sapiens) [TaxId: 9606]
(4)
1a
d2eh9a_
A:
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CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_2eh9A00 (A:2-111)
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)
Organisms
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)
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Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
DNA polymerase; domain 1
(617)
Homologous Superfamily
:
[code=1.10.150.60, no name defined]
(11)
Human (Homo sapiens)
(7)
1a
2eh9A00
A:2-111
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Chain A
Asymmetric Unit 1
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Asym.Unit (24 KB)
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