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2EDI
Asym. Unit
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Asym.Unit (912 KB)
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Models
(20 )
Title
:
SOLUTION STRUCTURE OF THE UQ_CON DOMAIN FROM HUMAN NEDD8-CONJUGATING ENZYME NCE2
Authors
:
H. Endo, K. Izumi, M. Yoshida, F. Hayashi, S. Yokoyama, Riken Structural Genomics/Proteomics Initiative (Rsgi)
Date
:
14 Feb 07 (Deposition) - 14 Aug 07 (Release) - 24 Feb 09 (Revision)
Method
:
SOLUTION NMR
Resolution
:
NOT APPLICABLE
Chains
:
Asym. Unit : A (20 x)
Keywords
:
Non-Proline Cis Peptide Bond, E2 Conjugating Enzyme, Structural Genomics, Nppsfa, National Project On Protein Structural And Functional Analyses, Riken Structural Genomics/Proteomics Initiative, Rsgi, Ligase
(Keyword Search:
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Reference
:
H. Endo, K. Izumi, M. Yoshida, F. Hayashi, S. Yokoyama
Solution Structure Of The Uq_con Domain From Human Nedd8-Conjugating Enzyme Nce2
To Be Published
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
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Sorry, no Info available
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Sites
(0, 0)
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SAPs(SNPs)/Variants
(0, 0)
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PROSITE Patterns/Profiles
(2, 2)
Info
All PROSITE Patterns/Profiles
1: UBIQUITIN_CONJUGAT_2 (A:17-156)
2: UBIQUITIN_CONJUGAT_1 (A:87-102)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
UBIQUITIN_CONJUGAT_2
PS50127
Ubiquitin-conjugating enzymes family profile.
UBE2F_HUMAN
35-174
1
A:17-156
2
UBIQUITIN_CONJUGAT_1
PS00183
Ubiquitin-conjugating enzymes active site.
UBE2F_HUMAN
105-120
1
A:87-102
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Exons
(9, 9)
Info
All Exons
Exon 1.3 (A:1-22 (gaps))
Exon 1.6 (A:22-32)
Exon 1.8 (A:32-54)
Exon 1.10c (A:54-76)
Exon 1.11c (A:77-100)
Exon 1.12b (A:100-119)
Exon 1.13a (A:120-130)
Exon 1.14c (A:131-151)
Exon 1.15s (A:152-167)
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All Exon Boundaries
01: Boundary 1.1c/1.3
02: Boundary 1.3/1.6
03: Boundary 1.6/1.8
04: Boundary 1.8/1.10c
05: Boundary 1.10c/1.11c
06: Boundary 1.11c/1.12b
07: Boundary 1.12b/1.13a
08: Boundary 1.13a/1.14c
09: Boundary 1.14c/1.15s
10: Boundary 1.15s/-
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1c
ENST00000272930
1c
ENSE00001841551
chr2:
238875597-238875774
178
UBE2F_HUMAN
-
0
0
-
-
1.3
ENST00000272930
3
ENSE00000965342
chr2:
238881734-238881867
134
UBE2F_HUMAN
1-40
40
1
A:1-22 (gaps)
28
1.6
ENST00000272930
6
ENSE00001639741
chr2:
238896605-238896634
30
UBE2F_HUMAN
40-50
11
1
A:22-32
11
1.8
ENST00000272930
8
ENSE00001685506
chr2:
238903386-238903451
66
UBE2F_HUMAN
50-72
23
1
A:32-54
23
1.10c
ENST00000272930
10c
ENSE00001722321
chr2:
238925208-238925275
68
UBE2F_HUMAN
72-94
23
1
A:54-76
23
1.11c
ENST00000272930
11c
ENSE00001595446
chr2:
238933983-238934053
71
UBE2F_HUMAN
95-118
24
1
A:77-100
24
1.12b
ENST00000272930
12b
ENSE00001722543
chr2:
238939197-238939254
58
UBE2F_HUMAN
118-137
20
1
A:100-119
20
1.13a
ENST00000272930
13a
ENSE00001619260
chr2:
238940863-238940895
33
UBE2F_HUMAN
138-148
11
1
A:120-130
11
1.14c
ENST00000272930
14c
ENSE00001638076
chr2:
238944519-238944581
63
UBE2F_HUMAN
149-169
21
1
A:131-151
21
1.15s
ENST00000272930
15s
ENSE00001638496
chr2:
238949929-238951236
1308
UBE2F_HUMAN
170-185
16
1
A:152-167
16
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SCOP Domains
(1, 1)
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1a: SCOP_d2edia_ (A:)
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Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
UBC-like
(176)
Superfamily
:
UBC-like
(176)
Family
:
automated matches
(16)
Protein domain
:
automated matches
(16)
Human (Homo sapiens) [TaxId: 9606]
(10)
1a
d2edia_
A:
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CATH Domains
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