PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
No precomputed SNP/Variant structure found.
Calculating the structure may take several minutes.
PLEASE WAIT...
Getting 'PROSITE' information from database.
PLEASE WAIT...
Getting 'Exon' information from database.
2EBW
Asym. Unit
Info
Asym.Unit (513 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
Models
(20 )
Title
:
SOLUTION STRUCTURE OF THE BRCT DOMAIN FROM HUMAN DNA REPAIR PROTEIN REV1
Authors
:
T. Nagashima, F. Hayashi, S. Yokoyama, Riken Structural Genomics/Proteomics Initiative (Rsgi)
Date
:
09 Feb 07 (Deposition) - 14 Aug 07 (Release) - 24 Feb 09 (Revision)
Method
:
SOLUTION NMR
Resolution
:
NOT APPLICABLE
Chains
:
Asym. Unit : A (20 x)
Keywords
:
A/B/A 3 Layers, Parallel Beta-Sheet, Dna Replication, Translession Synthesis, Tls, Dna Polymerase Zeta, Pcna, Structural Genomics, Nppsfa, National Project On Protein Structural And Functional Analyses, Riken Structural Genomics/Proteomics Initiative, Rsgi, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
T. Nagashima, F. Hayashi, S. Yokoyama
Solution Structure Of The Brct Domain From Human Dna Repair Protein Rev1
To Be Published
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(0, 0)
Info
All Hetero Components
View:
Select:
Label:
Sorry, no Info available
[
close Hetero component info
]
Sites
(0, 0)
Info
All Sites
View:
Select:
Label:
Sorry, no Info available
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available in "Model" view)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: BRCT (A:44-131)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
BRCT
PS50172
BRCT domain profile.
REV1_HUMAN
44-131
1
A:44-131
[
close PROSITE info
]
Exons
(3, 3)
Info
All Exons
Exon 1.3b (A:37-61)
Exon 1.5 (A:61-117)
Exon 1.6 (A:117-133)
View:
Select:
Label:
All Exon Boundaries
1: Boundary 1.2/1.3b
2: Boundary 1.3b/1.5
3: Boundary 1.5/1.6
4: Boundary 1.6/1.7a
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000258428
1a
ENSE00001515354
chr2:
100106497-100106279
219
REV1_HUMAN
-
0
0
-
-
1.2
ENST00000258428
2
ENSE00000921861
chr2:
100081447-100081384
64
REV1_HUMAN
1-18
18
0
-
-
1.3b
ENST00000258428
3b
ENSE00000921860
chr2:
100079084-100078958
127
REV1_HUMAN
19-61
43
1
A:37-61
25
1.5
ENST00000258428
5
ENSE00001637671
chr2:
100065966-100065798
169
REV1_HUMAN
61-117
57
1
A:61-117
57
1.6
ENST00000258428
6
ENSE00001757863
chr2:
100058931-100058779
153
REV1_HUMAN
117-168
52
1
A:117-133
17
1.7a
ENST00000258428
7a
ENSE00001698319
chr2:
100055772-100055063
710
REV1_HUMAN
168-405
238
0
-
-
1.9b
ENST00000258428
9b
ENSE00001623485
chr2:
100052403-100052296
108
REV1_HUMAN
405-441
37
0
-
-
1.10
ENST00000258428
10
ENSE00001751683
chr2:
100050910-100050794
117
REV1_HUMAN
441-480
40
0
-
-
1.12a
ENST00000258428
12a
ENSE00000921854
chr2:
100046410-100046302
109
REV1_HUMAN
480-516
37
0
-
-
1.14b
ENST00000258428
14b
ENSE00001685794
chr2:
100040742-100040614
129
REV1_HUMAN
516-559
44
0
-
-
1.15
ENST00000258428
15
ENSE00001749185
chr2:
100038115-100037961
155
REV1_HUMAN
559-611
53
0
-
-
1.16b
ENST00000258428
16b
ENSE00001690779
chr2:
100035409-100035290
120
REV1_HUMAN
611-651
41
0
-
-
1.17b
ENST00000258428
17b
ENSE00001626429
chr2:
100029413-100029193
221
REV1_HUMAN
651-724
74
0
-
-
1.18a
ENST00000258428
18a
ENSE00001733763
chr2:
100027329-100027157
173
REV1_HUMAN
725-782
58
0
-
-
1.19b
ENST00000258428
19b
ENSE00001627924
chr2:
100024593-100024491
103
REV1_HUMAN
782-816
35
0
-
-
1.20b
ENST00000258428
20b
ENSE00001802837
chr2:
100022952-100022787
166
REV1_HUMAN
817-872
56
0
-
-
1.20h
ENST00000258428
20h
ENSE00001790412
chr2:
100022568-100022372
197
REV1_HUMAN
872-937
66
0
-
-
1.21
ENST00000258428
21
ENSE00001641934
chr2:
100021140-100020907
234
REV1_HUMAN
938-1015
78
0
-
-
1.22
ENST00000258428
22
ENSE00001774065
chr2:
100020278-100020158
121
REV1_HUMAN
1016-1056
41
0
-
-
1.23d
ENST00000258428
23d
ENSE00001793684
chr2:
100019569-100019352
218
REV1_HUMAN
1056-1128
73
0
-
-
1.24a
ENST00000258428
24a
ENSE00000921842
chr2:
100019263-100019107
157
REV1_HUMAN
1129-1181
53
0
-
-
1.24e
ENST00000258428
24e
ENSE00000921841
chr2:
100018809-100018707
103
REV1_HUMAN
1181-1215
35
0
-
-
1.25b
ENST00000258428
25b
ENSE00000921840
chr2:
100017815-100016938
878
REV1_HUMAN
1215-1251
37
0
-
-
[
close EXON info
]
SCOP Domains
(0, 0)
Info
All SCOP Domains
View:
Select:
Label:
Sorry, no Info available
[
close SCOP info
]
CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (513 KB)
Header - Asym.Unit
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
2EBW
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help