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2EBL
Asym. Unit
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Asym.Unit (457 KB)
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Models
(20 )
Title
:
SOLUTION STRUCTURE OF THE ZINC FINGER, C4-TYPE DOMAIN OF HUMAN COUP TRANSCRIPTION FACTOR 1
Authors
:
M. Yoneyama, S. Koshiba, S. Watabe, T. Harada, T. Kigawa, S. Yokoyama, Riken Structural Genomics/Proteomics Initiative (Rsgi)
Date
:
09 Feb 07 (Deposition) - 19 Feb 08 (Release) - 24 Feb 09 (Revision)
Method
:
SOLUTION NMR
Resolution
:
NOT APPLICABLE
Chains
:
Asym. Unit : A (20 x)
Keywords
:
Dna-Binding, Metal-Binding, Nuclear Protein, Receptor, Transcription, Transcription Regulation, Zinc, Ear3, Erbal3, Tfcoup1, Structural Genomics, Nppsfa, National Project On Protein Structural And Functional Analyses, Riken Structural Genomics/Proteomics Initiative, Rsgi
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. Yoneyama, S. Koshiba, S. Watabe, T. Harada, T. Kigawa, S. Yokoyama
Solution Structure Of The Zinc Finger, C4-Type Domain Of Human Coup Transcription Factor 1
To Be Published
(for further references see the
PDB file header
)
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Hetero Components
(1, 2)
Info
All Hetero Components
1a: ZINC ION (ZNa)
1b: ZINC ION (ZNb)
View:
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Label:
No.
Name
Count
Type
Full Name
1
ZN
2
Ligand/Ion
ZINC ION
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Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
CYS A:10 , CYS A:13 , CYS A:27 , CYS A:30
BINDING SITE FOR RESIDUE ZN A 191
2
AC2
SOFTWARE
CYS A:46 , CYS A:52 , CYS A:62 , CYS A:65
BINDING SITE FOR RESIDUE ZN A 241
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SAPs(SNPs)/Variants
(3, 3)
Info
(mutated residues are not available in "Model" view)
All SNPs/Variants
1: VAR_071319 (R36K, chain A, )
2: VAR_071320 (S37R, chain A, )
3: VAR_071321 (R39P, chain A, )
View:
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Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_071319
R
112
K
COT1_HUMAN
Disease (BBSOAS)
---
A
R
36
K
2
UniProt
VAR_071320
S
113
R
COT1_HUMAN
Disease (BBSOAS)
---
A
S
37
R
3
UniProt
VAR_071321
R
115
P
COT1_HUMAN
Disease (BBSOAS)
---
A
R
39
P
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(2, 2)
Info
All PROSITE Patterns/Profiles
1: NUCLEAR_REC_DBD_2 (A:8-82)
2: NUCLEAR_REC_DBD_1 (A:10-36)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
NUCLEAR_REC_DBD_2
PS51030
Nuclear hormone receptors DNA-binding domain profile.
COT1_HUMAN
83-158
1
A:8-82
2
NUCLEAR_REC_DBD_1
PS00031
Nuclear hormones receptors DNA-binding region signature.
COT1_HUMAN
86-112
1
A:10-36
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Exons
(2, 2)
Info
All Exons
Exon 1.1 (A:1-79 (gaps))
Exon 1.4c (A:79-89 (gaps))
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All Exon Boundaries
1: Boundary -/1.1
2: Boundary 1.1/1.4c
3: Boundary 1.4c/1.6b
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000327111
1
ENSE00001250011
chr5:
92919043-92921192
2150
COT1_HUMAN
1-155
155
1
A:1-79 (gaps)
91
1.4c
ENST00000327111
4c
ENSE00001249995
chr5:
92923623-92924150
528
COT1_HUMAN
155-331
177
1
A:79-89 (gaps)
15
1.6b
ENST00000327111
6b
ENSE00001250004
chr5:
92929268-92930321
1054
COT1_HUMAN
331-423
93
0
-
-
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SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d2ebla_ (A:)
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)
(
)
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Protein Domains
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)
(
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Organisms
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(
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Class
:
Small proteins
(3458)
Fold
:
Glucocorticoid receptor-like (DNA-binding domain)
(292)
Superfamily
:
Glucocorticoid receptor-like (DNA-binding domain)
(292)
Family
:
automated matches
(14)
Protein domain
:
automated matches
(14)
Human (Homo sapiens) [TaxId: 9606]
(8)
1a
d2ebla_
A:
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CATH Domains
(0, 0)
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all CATH domains
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Sorry, no Info available
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Pfam Domains
(0, 0)
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Chain A
Asymmetric Unit 1
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Asym.Unit (457 KB)
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