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2DYS
Asym. Unit
Info
Asym.Unit (680 KB)
Biol.Unit 1 (655 KB)
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(1)
Title
:
BOVINE HEART CYTOCHROME C OXIDASE MODIFIED BY DCCD
Authors
:
K. Shinzawa-Itoh, H. Aoyama, K. Muramoto, T. Kurauchi, T. Mizushima, E. Yamashita, T. Tsukihara, S. Yoshikawa
Date
:
16 Sep 06 (Deposition) - 03 Apr 07 (Release) - 23 May 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.20
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z
Biol. Unit 1: A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z (1x)
Keywords
:
Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
K. Shinzawa-Itoh, H. Aoyama, K. Muramoto, H. Terada, T. Kurauchi, Y. Tadehara, A. Yamasaki, T. Sugimura, S. Kurono, K. Tsujimoto, T. Mizushima, E. Yamashita, T. Tsukihara, S. Yoshikawa
Structures And Physiological Roles Of 13 Integral Lipids Of Bovine Heart Cytochrome C Oxidase
Embo J. V. 26 1713 2007
[
close entry info
]
Hetero Components
(18, 64)
Info
All Hetero Components
01a: CARDIOLIPIN (CDLa)
01b: CARDIOLIPIN (CDLb)
01c: CARDIOLIPIN (CDLc)
01d: CARDIOLIPIN (CDLd)
02a: CHOLIC ACID (CHDa)
02b: CHOLIC ACID (CHDb)
02c: CHOLIC ACID (CHDc)
02d: CHOLIC ACID (CHDd)
02e: CHOLIC ACID (CHDe)
02f: CHOLIC ACID (CHDf)
02g: CHOLIC ACID (CHDg)
02h: CHOLIC ACID (CHDh)
04a: DINUCLEAR COPPER ION (CUAa)
04b: DINUCLEAR COPPER ION (CUAb)
03a: COPPER (II) ION (CUa)
04b: COPPER (II) ION (CUb)
05a: DICYCLOHEXYLUREA (DCWa)
05b: DICYCLOHEXYLUREA (DCWb)
06a: DECYL-BETA-D-MALTOPYRANOSIDE (DMUa)
06b: DECYL-BETA-D-MALTOPYRANOSIDE (DMUb)
06c: DECYL-BETA-D-MALTOPYRANOSIDE (DMUc)
06d: DECYL-BETA-D-MALTOPYRANOSIDE (DMUd)
07a: N-FORMYLMETHIONINE (FMEa)
07b: N-FORMYLMETHIONINE (FMEb)
07c: N-FORMYLMETHIONINE (FMEc)
07d: N-FORMYLMETHIONINE (FMEd)
08a: HEME-A (HEAa)
08b: HEME-A (HEAb)
08c: HEME-A (HEAc)
08d: HEME-A (HEAd)
09a: MAGNESIUM ION (MGa)
09b: MAGNESIUM ION (MGb)
10a: SODIUM ION (NAa)
10b: SODIUM ION (NAb)
11a: (1S)-2-{[(2-AMINOETHOXY)(HYDROXY)P... (PEKa)
11b: (1S)-2-{[(2-AMINOETHOXY)(HYDROXY)P... (PEKb)
11c: (1S)-2-{[(2-AMINOETHOXY)(HYDROXY)P... (PEKc)
11d: (1S)-2-{[(2-AMINOETHOXY)(HYDROXY)P... (PEKd)
11e: (1S)-2-{[(2-AMINOETHOXY)(HYDROXY)P... (PEKe)
11f: (1S)-2-{[(2-AMINOETHOXY)(HYDROXY)P... (PEKf)
12a: (1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPY... (PGVa)
12b: (1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPY... (PGVb)
12c: (1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPY... (PGVc)
12d: (1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPY... (PGVd)
12e: (1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPY... (PGVe)
12f: (1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPY... (PGVf)
12g: (1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPY... (PGVg)
12h: (1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPY... (PGVh)
13a: (7R,17E,20E)-4-HYDROXY-N,N,N-TRIME... (PSCa)
13b: (7R,17E,20E)-4-HYDROXY-N,N,N-TRIME... (PSCb)
14a: N-ACETYL-SERINE (SACa)
14b: N-ACETYL-SERINE (SACb)
15a: TRISTEAROYLGLYCEROL (TGLa)
15b: TRISTEAROYLGLYCEROL (TGLb)
15c: TRISTEAROYLGLYCEROL (TGLc)
15d: TRISTEAROYLGLYCEROL (TGLd)
15e: TRISTEAROYLGLYCEROL (TGLe)
15f: TRISTEAROYLGLYCEROL (TGLf)
16a: PHOSPHOTHREONINE (TPOa)
16b: PHOSPHOTHREONINE (TPOb)
17a: UNKNOWN ATOM OR ION (UNXa)
17b: UNKNOWN ATOM OR ION (UNXb)
18a: ZINC ION (ZNa)
18b: ZINC ION (ZNb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CDL
4
Ligand/Ion
CARDIOLIPIN
2
CHD
8
Ligand/Ion
CHOLIC ACID
3
CU
2
Ligand/Ion
COPPER (II) ION
4
CUA
2
Ligand/Ion
DINUCLEAR COPPER ION
5
DCW
2
Ligand/Ion
DICYCLOHEXYLUREA
6
DMU
4
Ligand/Ion
DECYL-BETA-D-MALTOPYRANOSIDE
7
FME
4
Mod. Amino Acid
N-FORMYLMETHIONINE
8
HEA
4
Ligand/Ion
HEME-A
9
MG
2
Ligand/Ion
MAGNESIUM ION
10
NA
2
Ligand/Ion
SODIUM ION
11
PEK
6
Ligand/Ion
(1S)-2-{[(2-AMINOETHOXY)(HYDROXY)PHOSPHORYL]OXY}-1-[(STEAROYLOXY)METHYL]ETHYL (5E,8E,11E,14E)-ICOSA-5,8,11,14-TETRAENOATE
12
PGV
8
Ligand/Ion
(1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL (11E)-OCTADEC-11-ENOATE
13
PSC
2
Ligand/Ion
(7R,17E,20E)-4-HYDROXY-N,N,N-TRIMETHYL-9-OXO-7-[(PALMITOYLOXY)METHYL]-3,5,8-TRIOXA-4-PHOSPHAHEXACOSA-17,20-DIEN-1-AMINIUM 4-OXIDE
14
SAC
2
Mod. Amino Acid
N-ACETYL-SERINE
15
TGL
6
Ligand/Ion
TRISTEAROYLGLYCEROL
16
TPO
2
Mod. Amino Acid
PHOSPHOTHREONINE
17
UNX
2
Ligand/Ion
UNKNOWN ATOM OR ION
18
ZN
2
Ligand/Ion
ZINC ION
[
close Hetero Component info
]
Sites
(54, 54)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
30: DC3 (SOFTWARE)
31: DC4 (SOFTWARE)
32: DC5 (SOFTWARE)
33: DC6 (SOFTWARE)
34: DC7 (SOFTWARE)
35: DC8 (SOFTWARE)
36: DC9 (SOFTWARE)
37: EC1 (SOFTWARE)
38: EC2 (SOFTWARE)
39: EC3 (SOFTWARE)
40: EC4 (SOFTWARE)
41: EC5 (SOFTWARE)
42: EC6 (SOFTWARE)
43: EC7 (SOFTWARE)
44: EC8 (SOFTWARE)
45: EC9 (SOFTWARE)
46: FC1 (SOFTWARE)
47: FC2 (SOFTWARE)
48: FC3 (SOFTWARE)
49: FC4 (SOFTWARE)
50: FC5 (SOFTWARE)
51: FC6 (SOFTWARE)
52: FC7 (SOFTWARE)
53: FC8 (SOFTWARE)
54: FC9 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
HIS A:240 , HIS A:290 , HIS A:291
BINDING SITE FOR RESIDUE CU A 601
02
AC2
SOFTWARE
HIS A:368 , ASP A:369 , HOH A:721 , GLU B:198 , HOH B:2007 , HOH B:2008
BINDING SITE FOR RESIDUE MG A 602
03
AC3
SOFTWARE
GLU A:40 , GLY A:45 , SER A:441 , HOH A:719
BINDING SITE FOR RESIDUE NA A 603
04
AC4
SOFTWARE
GLY A:27 , MET A:28 , THR A:31 , SER A:34 , ILE A:37 , ARG A:38 , TYR A:54 , VAL A:58 , HIS A:61 , ALA A:62 , MET A:65 , VAL A:70 , GLY A:125 , TRP A:126 , TYR A:371 , PHE A:377 , HIS A:378 , SER A:382 , VAL A:386 , PHE A:425 , GLN A:428 , ARG A:438 , ARG A:439 , MET A:468 , HOH A:704 , HOH A:724 , HOH A:731
BINDING SITE FOR RESIDUE HEA A 604
05
AC5
SOFTWARE
TRP A:126 , TRP A:236 , VAL A:243 , TYR A:244 , HIS A:290 , HIS A:291 , THR A:309 , ILE A:312 , ALA A:313 , GLY A:317 , THR A:349 , GLY A:352 , GLY A:355 , ILE A:356 , LEU A:358 , ALA A:359 , ASP A:364 , HIS A:368 , HIS A:376 , PHE A:377 , VAL A:380 , LEU A:381 , ARG A:438 , HOH A:712 , HOH A:722 , HOH A:730 , PRO B:69 , ILE B:72 , LEU B:73
BINDING SITE FOR RESIDUE HEA A 605
06
AC6
SOFTWARE
ASN A:406 , THR A:408 , TRP A:409 , ALA D:84 , PHE D:87 , HIS K:10 , GLN M:15 , ALA M:16 , LEU M:19 , SER M:20 , HOH M:201
BINDING SITE FOR RESIDUE PGV A 606
07
AC7
SOFTWARE
PHE A:94 , PRO A:95 , ARG A:96 , MET A:97 , HOH A:774 , HOH A:796 , HIS C:9 , THR C:28 , ASN C:50 , MET C:54 , TRP C:57 , TRP C:58 , GLU C:64 , HIS C:71 , LEU C:79 , GLY C:82 , PHE C:86 , DCW C:301 , DMU C:302 , PEK C:305
BINDING SITE FOR RESIDUE PGV A 607
08
AC8
SOFTWARE
HIS B:161 , CYS B:196 , GLU B:198 , CYS B:200 , HIS B:204 , MET B:207
BINDING SITE FOR RESIDUE CUA B 301
09
AC9
SOFTWARE
ASN A:422 , PHE A:426 , PHE A:430 , LEU A:433 , LEU B:7 , LEU B:28 , VAL B:31 , PHE B:32 , SER B:35 , LEU B:39 , HOH B:2113 , ARG I:43 , HOH I:107
BINDING SITE FOR RESIDUE TGL B 302
10
BC1
SOFTWARE
PHE A:321 , HOH A:865 , ILE B:41 , HIS B:52 , MET B:56 , ASP B:57 , VAL B:61 , TRP B:65 , HIS E:5 , ASP E:8 , PHE E:11 , LEU E:41 , HOH E:203 , ARG I:10 , ALA I:14
BINDING SITE FOR RESIDUE PSC B 303
11
BC2
SOFTWARE
MET A:271 , TRP A:275 , GLN B:59 , GLU B:62 , THR B:63 , HOH B:2017 , HOH B:2060 , HOH B:2065 , PEK P:306 , ARG T:14 , ARG T:17 , PHE T:18 , GLY T:22
BINDING SITE FOR RESIDUE CHD B 304
12
BC3
SOFTWARE
ILE A:158 , PRO A:200 , PGV A:607 , PHE C:86 , SER C:89 , GLU C:90 , HIS C:207 , ILE C:210 , PEK C:305 , PGV C:307
BINDING SITE FOR RESIDUE DCW C 301
13
BC4
SOFTWARE
PGV A:607 , TRP C:34 , MET C:40 , PEK C:305 , HOH C:479 , TRP G:62 , GLY G:63
BINDING SITE FOR RESIDUE DMU C 302
14
BC5
SOFTWARE
HIS A:233 , ASP A:300 , THR A:301 , TYR A:304 , TRP C:99 , HIS C:103 , PGV C:308
BINDING SITE FOR RESIDUE CHD C 304
15
BC6
SOFTWARE
HIS A:151 , LEU A:210 , PGV A:607 , TRP C:34 , TYR C:181 , TYR C:182 , ALA C:184 , PHE C:186 , THR C:187 , ILE C:188 , PHE C:198 , GLY C:202 , DCW C:301 , DMU C:302 , TRP G:62 , THR G:68 , PHE G:69 , PHE G:70 , HIS G:71 , ASN G:76 , HOH G:204
BINDING SITE FOR RESIDUE PEK C 305
16
BC7
SOFTWARE
LYS C:157 , HIS C:158 , GLN C:161 , THR C:168 , TYR C:172 , HOH C:482 , ALA F:1 , LYS G:5 , ARG G:17 , PHE G:21 , CDL G:101 , TRP N:275 , SER N:279 , GLN O:59 , THR O:66 , CHD O:302
BINDING SITE FOR RESIDUE PEK C 306
17
BC8
SOFTWARE
MET C:27 , MET C:54 , TRP C:58 , VAL C:61 , SER C:65 , THR C:66 , ILE C:210 , THR C:213 , PHE C:214 , ARG C:221 , HIS C:226 , PHE C:227 , THR C:228 , HIS C:231 , HIS C:232 , PHE C:233 , GLY C:234 , DCW C:301 , CDL C:309 , HOH C:429 , HOH C:444 , HOH F:208
BINDING SITE FOR RESIDUE PGV C 307
18
BC9
SOFTWARE
TRP C:99 , TYR C:102 , HIS C:103 , CHD C:304 , ASN H:24 , CDL T:102
BINDING SITE FOR RESIDUE PGV C 308
19
CC1
SOFTWARE
MET C:51 , MET C:54 , TYR C:55 , ARG C:59 , ARG C:63 , PHE C:67 , THR C:213 , VAL C:217 , LYS C:224 , HIS C:226 , PGV C:307 , HOH C:455 , LYS J:8
BINDING SITE FOR RESIDUE CDL C 309
20
CC2
SOFTWARE
ARG C:156 , PHE C:164 , LEU C:223 , HOH C:463 , PHE J:1
BINDING SITE FOR RESIDUE CHD C 310
21
CC3
SOFTWARE
TRP A:334 , GLY A:343 , LYS A:411 , PHE A:414 , HOH A:883 , ILE B:42 , HOH B:2057 , ARG D:73 , SER D:74 , THR D:75 , GLU D:77 , TRP D:78 , ILE D:89 , HOH D:364 , ARG I:16
BINDING SITE FOR RESIDUE TGL D 201
22
CC4
SOFTWARE
CYS F:60 , CYS F:62 , CYS F:82 , CYS F:85
BINDING SITE FOR RESIDUE ZN F 101
23
CC5
SOFTWARE
LEU C:127 , LEU C:131 , VAL C:254 , PEK C:306 , LEU G:23 , SER G:27 , LEU G:30 , CYS G:31 , ASN G:34 , LEU G:37 , HIS G:38 , ARG G:42 , HOH G:222 , HOH G:233 , HOH G:235 , PHE N:282 , ILE N:286 , ASP N:300 , TYR N:304 , SER N:307 , ILE N:311 , LEU O:78 , PGV P:308
BINDING SITE FOR RESIDUE CDL G 101
24
CC6
SOFTWARE
SER G:2 , ALA G:3 , LYS G:5 , GLY G:6 , HIS G:8 , HOH G:225 , LYS P:77 , ARG P:80 , TYR P:81 , ILE P:84 , LEU P:85 , PHE P:98 , TRP P:240 , PHE P:244 , VAL P:247
BINDING SITE FOR RESIDUE PEK G 102
25
CC7
SOFTWARE
TYR J:32 , ARG J:33 , MET J:36 , LEU J:40
BINDING SITE FOR RESIDUE CHD J 101
26
CC8
SOFTWARE
THR A:17 , LEU A:20 , LEU A:21 , TRP A:25 , LEU A:113 , PHE A:400 , ILE A:472 , ILE L:11 , PRO L:12 , PHE L:13 , ARG L:20 , MET L:24 , PHE L:28 , PHE L:29 , HOH L:214
BINDING SITE FOR RESIDUE TGL L 101
27
CC9
SOFTWARE
TRP D:98 , LEU M:27 , LEU M:28 , GLY M:31 , TRP M:32 , TYR M:35 , HIS M:36
BINDING SITE FOR RESIDUE DMU M 101
28
DC1
SOFTWARE
HIS N:240 , HIS N:290 , HIS N:291
BINDING SITE FOR RESIDUE CU N 601
29
DC2
SOFTWARE
HIS N:368 , ASP N:369 , GLU O:198 , HOH O:408 , HOH O:409 , HOH O:410
BINDING SITE FOR RESIDUE MG N 602
30
DC3
SOFTWARE
GLU N:40 , GLY N:45 , SER N:441 , HOH N:718
BINDING SITE FOR RESIDUE NA N 603
31
DC4
SOFTWARE
MET N:28 , THR N:31 , SER N:34 , ILE N:37 , ARG N:38 , TYR N:54 , VAL N:58 , HIS N:61 , ALA N:62 , MET N:65 , VAL N:70 , GLY N:125 , TRP N:126 , TYR N:371 , VAL N:374 , PHE N:377 , HIS N:378 , SER N:382 , VAL N:386 , PHE N:425 , GLN N:428 , ARG N:438 , ARG N:439 , HOH N:703 , HOH N:722 , HOH N:729
BINDING SITE FOR RESIDUE HEA N 604
32
DC5
SOFTWARE
TRP N:126 , TRP N:236 , VAL N:243 , TYR N:244 , ILE N:247 , HIS N:290 , HIS N:291 , THR N:309 , ALA N:313 , GLY N:317 , THR N:349 , GLY N:352 , GLY N:355 , ILE N:356 , LEU N:358 , ALA N:359 , ASP N:364 , HIS N:368 , VAL N:373 , HIS N:376 , PHE N:377 , VAL N:380 , LEU N:381 , ARG N:438 , HOH N:704 , HOH N:711 , HOH N:720 , HOH N:728 , PRO O:69 , ILE O:72 , LEU O:73
BINDING SITE FOR RESIDUE HEA N 605
33
DC6
SOFTWARE
THR N:17 , LEU N:20 , LEU N:21 , TRP N:25 , LEU N:113 , PHE N:400 , ILE N:472 , ILE Y:11 , PRO Y:12 , PHE Y:13 , SER Y:14 , MET Y:24 , PHE Y:28 , PHE Y:29
BINDING SITE FOR RESIDUE TGL N 606
34
DC7
SOFTWARE
TRP N:334 , MET N:339 , GLY N:343 , LYS N:411 , PHE N:414 , HOH N:855 , ILE O:42 , THR O:47 , LYS O:49 , HOH O:459 , ARG Q:73 , SER Q:74 , THR Q:75 , GLU Q:77 , TRP Q:78 , ILE Q:89 , ARG V:16
BINDING SITE FOR RESIDUE TGL N 607
35
DC8
SOFTWARE
ASN N:406 , THR N:408 , TRP N:409 , ALA Q:84 , PHE Q:87 , GLN Z:15 , ALA Z:16 , LEU Z:19 , SER Z:20 , HOH Z:201
BINDING SITE FOR RESIDUE PGV N 608
36
DC9
SOFTWARE
PHE N:94 , PRO N:95 , ARG N:96 , MET N:97 , PHE N:148 , HOH N:792 , HOH N:875 , HIS P:9 , ASN P:50 , MET P:54 , TRP P:57 , TRP P:58 , GLU P:64 , HIS P:71 , LEU P:79 , GLY P:82 , DCW P:301 , DMU P:302 , PEK P:305
BINDING SITE FOR RESIDUE PGV N 609
37
EC1
SOFTWARE
HIS O:161 , CYS O:196 , GLU O:198 , CYS O:200 , HIS O:204 , MET O:207
BINDING SITE FOR RESIDUE CUA O 301
38
EC2
SOFTWARE
PEK C:306 , ARG G:14 , ARG G:17 , GLY G:22 , MET N:271 , GLU O:62 , THR O:63 , HOH O:401 , HOH O:419 , HOH O:461 , HOH O:490
BINDING SITE FOR RESIDUE CHD O 302
39
EC3
SOFTWARE
ASN N:422 , PHE N:426 , PHE N:430 , LEU N:433 , LEU O:7 , GLY O:8 , LEU O:28 , VAL O:31 , PHE O:32 , SER O:35 , SER O:36 , LEU O:39 , HOH O:486 , HOH Q:220 , ARG V:43
BINDING SITE FOR RESIDUE TGL O 303
40
EC4
SOFTWARE
PHE N:321 , HIS N:328 , ILE O:41 , HIS O:52 , MET O:56 , ASP O:57 , VAL O:61 , TRP O:65 , HIS R:5 , ASP R:8 , PHE R:11 , ASP R:40 , LEU R:41 , ARG V:10
BINDING SITE FOR RESIDUE PSC O 304
41
EC5
SOFTWARE
ILE N:158 , PRO N:200 , PGV N:609 , PHE P:86 , SER P:89 , GLU P:90 , HIS P:207 , ILE P:210 , PEK P:305 , PGV P:307 , HOH P:447
BINDING SITE FOR RESIDUE DCW P 301
42
EC6
SOFTWARE
PGV N:609 , TRP P:34 , MET P:40 , PEK P:305 , SER T:61 , TRP T:62 , GLY T:63 , HOH T:223
BINDING SITE FOR RESIDUE DMU P 302
43
EC7
SOFTWARE
HIS N:233 , ASP N:300 , THR N:301 , TYR N:304 , TRP P:99 , HIS P:103 , HOH P:460
BINDING SITE FOR RESIDUE CHD P 304
44
EC8
SOFTWARE
HIS N:151 , PGV N:609 , TYR P:181 , TYR P:182 , ALA P:184 , PHE P:186 , THR P:187 , ILE P:188 , PHE P:198 , GLY P:202 , DCW P:301 , DMU P:302 , TRP T:62 , THR T:68 , PHE T:69 , PHE T:70 , HIS T:71 , ASN T:76 , HOH T:206
BINDING SITE FOR RESIDUE PEK P 305
45
EC9
SOFTWARE
SER A:279 , GLN B:59 , CHD B:304 , LYS P:157 , HIS P:158 , GLN P:161 , THR P:168 , TYR P:172 , ALA S:1 , LYS T:5 , ARG T:17 , PHE T:21 , CDL T:102 , HOH T:229
BINDING SITE FOR RESIDUE PEK P 306
46
FC1
SOFTWARE
MET P:27 , TRP P:58 , VAL P:61 , SER P:65 , THR P:66 , PHE P:86 , ILE P:210 , PHE P:214 , ARG P:221 , HIS P:226 , PHE P:227 , THR P:228 , HIS P:231 , HIS P:232 , PHE P:233 , GLY P:234 , DCW P:301 , CDL P:309 , HOH P:429 , HOH P:443 , HOH S:207
BINDING SITE FOR RESIDUE PGV P 307
47
FC2
SOFTWARE
CDL G:101 , TYR P:102 , HIS P:103
BINDING SITE FOR RESIDUE PGV P 308
48
FC3
SOFTWARE
MET P:51 , MET P:54 , TYR P:55 , ARG P:59 , ARG P:63 , PHE P:67 , THR P:213 , ILE P:216 , LYS P:224 , HIS P:226 , PGV P:307 , HOH P:458 , HOH P:467 , LYS W:8
BINDING SITE FOR RESIDUE CDL P 309
49
FC4
SOFTWARE
ARG P:156 , PHE P:164 , LEU P:223 , PHE W:1
BINDING SITE FOR RESIDUE CHD P 310
50
FC5
SOFTWARE
CYS S:60 , CYS S:62 , CYS S:82 , CYS S:85
BINDING SITE FOR RESIDUE ZN S 101
51
FC6
SOFTWARE
LYS C:77 , ARG C:80 , TYR C:81 , ILE C:84 , PHE C:98 , TRP C:240 , PHE C:244 , VAL C:247 , SER T:2 , ALA T:3 , LYS T:5 , GLY T:6 , HIS T:8
BINDING SITE FOR RESIDUE PEK T 101
52
FC7
SOFTWARE
PHE A:282 , ILE A:286 , ASP A:300 , TYR A:304 , SER A:307 , ILE A:311 , ILE B:74 , LEU B:78 , LEU B:81 , TYR B:85 , PGV C:308 , LEU P:127 , LEU P:131 , THR P:134 , LEU P:250 , TYR P:253 , PEK P:306 , SER T:27 , LEU T:30 , CYS T:31 , ASN T:34 , LEU T:37 , HIS T:38 , ARG T:42
BINDING SITE FOR RESIDUE CDL T 102
53
FC8
SOFTWARE
LEU N:7 , TYR W:32 , ARG W:33 , MET W:36 , LEU W:40
BINDING SITE FOR RESIDUE CHD W 101
54
FC9
SOFTWARE
LEU Q:95 , TRP Q:98 , LEU Z:27 , LEU Z:28 , TRP Z:32 , TYR Z:35 , HIS Z:36
BINDING SITE FOR RESIDUE DMU Z 101
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(10, 20)
Info
All PROSITE Patterns/Profiles
01: COX2_TM (B:1-91,O:1-91)
02: COX1 (A:1-514,N:1-514)
03: COX3 (C:4-261,P:4-261)
04: CHCH (H:26-72,U:26-72)
05: COX5B_2 (F:1-98,S:1-98)
06: COX6A (G:55-72,T:55-72)
07: COX2_CUA (B:92-225,O:92-225)
08: COX5B_1 (F:69-91,S:69-91)
09: COX2 (B:159-207,O:159-207)
10: COX1_CUB (A:236-291,N:236-291)
;
View:
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Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
COX2_TM
PS50999
Cytochrome oxidase subunit II transmembrane region profile.
COX2_BOVIN
1-91
2
B:1-91
O:1-91
2
COX1
PS50855
Cytochrome oxidase subunit I profile.
COX1_BOVIN
1-514
2
A:1-514
N:1-514
3
COX3
PS50253
Heme-copper oxidase subunit III family profile.
COX3_BOVIN
4-261
2
C:4-261
P:4-261
4
CHCH
PS51808
Coiled coil-helix-coiled coil-helix (CHCH) domain profile.
CX6B1_BOVIN
27-73
2
H:26-72
U:26-72
5
COX5B_2
PS51359
Cytochrome c oxidase subunit Vb, zinc binding domain profile.
COX5B_BOVIN
32-129
2
F:1-98
S:1-98
6
COX6A
PS01329
Cytochrome c oxidase subunit VIa signature.
CX6A2_BOVIN
67-84
2
G:55-72
T:55-72
7
COX2_CUA
PS50857
Cytochrome oxidase subunit II copper A binding domain profile.
COX2_BOVIN
92-225
2
B:92-225
O:92-225
8
COX5B_1
PS00848
Cytochrome c oxidase subunit Vb, zinc binding region signature.
COX5B_BOVIN
100-122
2
F:69-91
S:69-91
9
COX2
PS00078
CO II and nitrous oxide reductase dinuclear copper centers signature.
COX2_BOVIN
159-207
2
B:159-207
O:159-207
10
COX1_CUB
PS00077
Heme-copper oxidase catalytic subunit, copper B binding region signature.
COX1_BOVIN
236-291
2
A:236-291
N:236-291
[
close PROSITE info
]
Exons
(11, 22)
Info
All Exons
Exon 1.2 (I:1-36 | V:1-36)
Exon 1.3 (I:37-73 | V:37-73)
Exon 2.2 (J:1-13 | W:1-13)
Exon 2.3 (J:14-42 | W:14-42)
Exon 2.4 (J:42-58 | W:42-58)
Exon 3.2 (E:5-32 | R:5-32)
Exon 3.3 (E:32-72 | R:32-72)
Exon 3.4 (E:73-109 | R:73-109)
Exon 4.1 (G:1-13 | T:1-13)
Exon 4.2 (G:13-58 | T:13-58)
Exon 4.3 (G:59-84 | T:59-84)
View:
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All Exon Boundaries
01: Boundary 1.1/1.2
02: Boundary 1.2/1.3
03: Boundary 1.3/1.4
04: Boundary 2.1/2.2
05: Boundary 2.2/2.3
06: Boundary 2.3/2.4
07: Boundary 2.4/-
08: Boundary 3.1/3.2
09: Boundary 3.2/3.3
10: Boundary 3.3/3.4
11: Boundary 3.4/3.5
12: Boundary -/4.1
13: Boundary 4.1/4.2
14: Boundary 4.2/4.3
15: Boundary 4.3/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENSBTAT00000018778
1
ENSBTAE00000392730
chr14:
62538824-62538908
85
COX6C_BOVIN
-
0
0
-
-
1.2
ENSBTAT00000018778
2
ENSBTAE00000152930
chr14:
62539837-62539968
132
COX6C_BOVIN
1-37
37
2
I:1-36
V:1-36
36
36
1.3
ENSBTAT00000018778
3
ENSBTAE00000152932
chr14:
62540912-62541039
128
COX6C_BOVIN
38-74
37
2
I:37-73
V:37-73
37
37
1.4
ENSBTAT00000018778
4
ENSBTAE00000382779
chr14:
62548625-62548744
120
COX6C_BOVIN
-
0
0
-
-
2.1
ENSBTAT00000019808
1
ENSBTAE00000161251
chr18:
46232862-46232802
61
CX7A1_BOVIN
1-5
5
0
-
-
2.2
ENSBTAT00000019808
2
ENSBTAE00000161252
chr18:
46232104-46232018
87
CX7A1_BOVIN
6-34
29
2
J:1-13
W:1-13
13
13
2.3
ENSBTAT00000019808
3
ENSBTAE00000161253
chr18:
46231883-46231799
85
CX7A1_BOVIN
35-63
29
2
J:14-42
W:14-42
29
29
2.4
ENSBTAT00000019808
4
ENSBTAE00000161254
chr18:
46231418-46231281
138
CX7A1_BOVIN
63-80
18
2
J:42-58
W:42-58
17
17
3.1
ENSBTAT00000022949
1
ENSBTAE00000344359
chr21:
33835267-33835426
160
COX5A_BOVIN
1-36
36
0
-
-
3.2
ENSBTAT00000022949
2
ENSBTAE00000187373
chr21:
33840320-33840436
117
COX5A_BOVIN
36-75
40
2
E:5-32
R:5-32
28
28
3.3
ENSBTAT00000022949
3
ENSBTAE00000187374
chr21:
33842603-33842724
122
COX5A_BOVIN
75-115
41
2
E:32-72
R:32-72
41
41
3.4
ENSBTAT00000022949
4
ENSBTAE00000187376
chr21:
33843979-33844143
165
COX5A_BOVIN
116-152
37
2
E:73-109
R:73-109
37
37
3.5
ENSBTAT00000022949
5
ENSBTAE00000187379
chr21:
33846054-33846214
161
COX5A_BOVIN
-
0
0
-
-
4.1
ENSBTAT00000026002
1
ENSBTAE00000425992
chr25:
29305227-29305113
115
CX6A2_BOVIN
1-25
25
2
G:1-13
T:1-13
13
13
4.2
ENSBTAT00000026002
2
ENSBTAE00000211646
chr25:
29304966-29304830
137
CX6A2_BOVIN
25-70
46
2
G:13-58
T:13-58
46
46
4.3
ENSBTAT00000026002
3
ENSBTAE00000211652
chr25:
29304732-29304604
129
CX6A2_BOVIN
71-97
27
2
G:59-84
T:59-84
26
26
[
close EXON info
]
SCOP Domains
(14, 28)
Info
All SCOP Domains
01a: SCOP_d2dyse_ (E:)
01b: SCOP_d2dysr_ (R:)
02a: SCOP_d2dysh_ (H:)
02b: SCOP_d2dysu_ (U:)
03a: SCOP_d2dysb1 (B:91-227)
03b: SCOP_d2dyso1 (O:91-227)
04a: SCOP_d2dysa_ (A:)
04b: SCOP_d2dysn_ (N:)
05a: SCOP_d2dysc_ (C:)
05b: SCOP_d2dysp_ (P:)
06a: SCOP_d2dysd_ (D:)
06b: SCOP_d2dysq_ (Q:)
07a: SCOP_d2dysg_ (G:)
07b: SCOP_d2dyst_ (T:)
08a: SCOP_d2dysi_ (I:)
08b: SCOP_d2dysv_ (V:)
09a: SCOP_d2dysj_ (J:)
09b: SCOP_d2dysw_ (W:)
10a: SCOP_d2dysk_ (K:)
10b: SCOP_d2dysx_ (X:)
11a: SCOP_d2dysl_ (L:)
11b: SCOP_d2dysy_ (Y:)
12a: SCOP_d2dysm_ (M:)
12b: SCOP_d2dysz_ (Z:)
13a: SCOP_d2dysb2 (B:1-90)
13b: SCOP_d2dyso2 (O:1-90)
14a: SCOP_d2dysf_ (F:)
14b: SCOP_d2dyss_ (S:)
View:
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Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
alpha-alpha superhelix
(690)
Superfamily
:
Cytochrome c oxidase subunit E
(25)
Family
:
Cytochrome c oxidase subunit E
(25)
Protein domain
:
Cytochrome c oxidase subunit E
(24)
Cow (Bos taurus) [TaxId: 9913]
(24)
01a
d2dyse_
E:
01b
d2dysr_
R:
Fold
:
Cytochrome c oxidase subunit h
(26)
Superfamily
:
Cytochrome c oxidase subunit h
(26)
Family
:
Cytochrome c oxidase subunit h
(26)
Protein domain
:
automated matches
(18)
Cow (Bos taurus) [TaxId: 9913]
(18)
02a
d2dysh_
H:
02b
d2dysu_
U:
Class
:
All beta proteins
(24004)
Fold
:
Cupredoxin-like
(545)
Superfamily
:
Cupredoxins
(543)
Family
:
Periplasmic domain of cytochrome c oxidase subunit II
(70)
Protein domain
:
Cytochrome c oxidase
(62)
Cow (Bos taurus) [TaxId: 9913]
(24)
03a
d2dysb1
B:91-227
03b
d2dyso1
O:91-227
Class
:
Membrane and cell surface proteins and peptides
(2046)
Fold
:
Cytochrome c oxidase subunit I-like
(65)
Superfamily
:
Cytochrome c oxidase subunit I-like
(65)
Family
:
Cytochrome c oxidase subunit I-like
(65)
Protein domain
:
automated matches
(24)
Cow (Bos taurus) [TaxId: 9913]
(18)
04a
d2dysa_
A:
04b
d2dysn_
N:
Fold
:
Cytochrome c oxidase subunit III-like
(29)
Superfamily
:
Cytochrome c oxidase subunit III-like
(29)
Family
:
Cytochrome c oxidase subunit III-like
(29)
Protein domain
:
Mitochondrial cytochrome c oxidase, subunit III
(25)
Cow (Bos taurus) [TaxId: 9913]
(25)
05a
d2dysc_
C:
05b
d2dysp_
P:
Fold
:
Single transmembrane helix
(568)
Superfamily
:
Mitochondrial cytochrome c oxidase subunit IV
(26)
Family
:
Mitochondrial cytochrome c oxidase subunit IV
(26)
Protein domain
:
automated matches
(18)
Cow (Bos taurus) [TaxId: 9913]
(18)
06a
d2dysd_
D:
06b
d2dysq_
Q:
Superfamily
:
Mitochondrial cytochrome c oxidase subunit VIa
(25)
Family
:
Mitochondrial cytochrome c oxidase subunit VIa
(25)
Protein domain
:
Mitochondrial cytochrome c oxidase subunit VIa
(24)
Cow (Bos taurus) [TaxId: 9913]
(24)
07a
d2dysg_
G:
07b
d2dyst_
T:
Superfamily
:
Mitochondrial cytochrome c oxidase subunit VIc
(25)
Family
:
Mitochondrial cytochrome c oxidase subunit VIc
(25)
Protein domain
:
Mitochondrial cytochrome c oxidase subunit VIc
(25)
Cow (Bos taurus) [TaxId: 9913]
(25)
08a
d2dysi_
I:
08b
d2dysv_
V:
Superfamily
:
Mitochondrial cytochrome c oxidase subunit VIIa
(25)
Family
:
Mitochondrial cytochrome c oxidase subunit VIIa
(25)
Protein domain
:
Mitochondrial cytochrome c oxidase subunit VIIa
(24)
Cow (Bos taurus) [TaxId: 9913]
(24)
09a
d2dysj_
J:
09b
d2dysw_
W:
Superfamily
:
Mitochondrial cytochrome c oxidase subunit VIIb
(26)
Family
:
Mitochondrial cytochrome c oxidase subunit VIIb
(26)
Protein domain
:
automated matches
(18)
Cow (Bos taurus) [TaxId: 9913]
(18)
10a
d2dysk_
K:
10b
d2dysx_
X:
Superfamily
:
Mitochondrial cytochrome c oxidase subunit VIIc (aka VIIIa)
(25)
Family
:
Mitochondrial cytochrome c oxidase subunit VIIc (aka VIIIa)
(25)
Protein domain
:
Mitochondrial cytochrome c oxidase subunit VIIc (aka VIIIa)
(24)
Cow (Bos taurus) [TaxId: 9913]
(24)
11a
d2dysl_
L:
11b
d2dysy_
Y:
Superfamily
:
Mitochondrial cytochrome c oxidase subunit VIIIb (aka IX)
(26)
Family
:
Mitochondrial cytochrome c oxidase subunit VIIIb (aka IX)
(26)
Protein domain
:
automated matches
(18)
Cow (Bos taurus) [TaxId: 9913]
(18)
12a
d2dysm_
M:
12b
d2dysz_
Z:
Fold
:
Transmembrane helix hairpin
(84)
Superfamily
:
Cytochrome c oxidase subunit II-like, transmembrane region
(66)
Family
:
Cytochrome c oxidase subunit II-like, transmembrane region
(57)
Protein domain
:
Mitochondrial cytochrome c oxidase, subunit II
(24)
Cow (Bos taurus) [TaxId: 9913]
(24)
13a
d2dysb2
B:1-90
13b
d2dyso2
O:1-90
Class
:
Small proteins
(3458)
Fold
:
Rubredoxin-like
(572)
Superfamily
:
Rubredoxin-like
(127)
Family
:
Cytochrome c oxidase Subunit F
(25)
Protein domain
:
Cytochrome c oxidase Subunit F
(24)
Cow (Bos taurus) [TaxId: 9913]
(24)
14a
d2dysf_
F:
14b
d2dyss_
S:
[
close SCOP info
]
CATH Domains
(15, 30)
Info
all CATH domains
01a: CATH_2dysG00 (G:1-84)
01b: CATH_2dysT00 (T:1-84)
02a: CATH_2dysI00 (I:2-73)
02b: CATH_2dysV00 (V:2-73)
03a: CATH_2dysJ00 (J:1-58)
03b: CATH_2dysW00 (W:1-58)
04a: CATH_2dysK00 (K:6-54)
04b: CATH_2dysX00 (X:6-54)
05a: CATH_2dysL00 (L:2-47)
05b: CATH_2dysY00 (Y:2-47)
06a: CATH_2dysM00 (M:1-43)
06b: CATH_2dysZ00 (Z:1-43)
07a: CATH_2dysE00 (E:5-109)
07b: CATH_2dysR00 (R:5-109)
08a: CATH_2dysH00 (H:7-85)
08b: CATH_2dysU00 (U:7-85)
09a: CATH_2dysD00 (D:4-147)
09b: CATH_2dysQ00 (Q:4-147)
10a: CATH_2dysC01 (C:3-70)
10b: CATH_2dysP01 (P:3-70)
11a: CATH_2dysB01 (B:2-91)
11b: CATH_2dysO01 (O:2-91)
12a: CATH_2dysA00 (A:2-514)
12b: CATH_2dysN00 (N:2-514)
13a: CATH_2dysC02 (C:71-261)
13b: CATH_2dysP02 (P:71-261)
14a: CATH_2dysF00 (F:1-98)
14b: CATH_2dysS00 (S:1-98)
15a: CATH_2dysB02 (B:92-227)
15b: CATH_2dysO02 (O:92-227)
View:
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Label:
Classes
(
)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Few Secondary Structures
(1120)
Architecture
:
Irregular
(1120)
Topology
:
Cytochrome C Oxidase; Chain G
(22)
Homologous Superfamily
:
Cytochrome C Oxidase, chain G
(22)
Cattle (Bos taurus)
(15)
01a
2dysG00
G:1-84
01b
2dysT00
T:1-84
Topology
:
Cytochrome C Oxidase; Chain I
(22)
Homologous Superfamily
:
Cytochrome C Oxidase, chain I
(22)
Cattle (Bos taurus)
(15)
02a
2dysI00
I:2-73
02b
2dysV00
V:2-73
Topology
:
Cytochrome C Oxidase; Chain J
(22)
Homologous Superfamily
:
Cytochrome C Oxidase, chain J
(22)
Cattle (Bos taurus)
(15)
03a
2dysJ00
J:1-58
03b
2dysW00
W:1-58
Topology
:
Cytochrome C Oxidase; Chain K
(22)
Homologous Superfamily
:
Cytochrome C Oxidase, chain K
(22)
Cattle (Bos taurus)
(15)
04a
2dysK00
K:6-54
04b
2dysX00
X:6-54
Topology
:
Cytochrome C Oxidase; Chain L
(22)
Homologous Superfamily
:
Cytochrome C Oxidase, chain L
(22)
Cattle (Bos taurus)
(15)
05a
2dysL00
L:2-47
05b
2dysY00
Y:2-47
Topology
:
Cytochrome C Oxidase; Chain M
(30)
Homologous Superfamily
:
Cytochrome C Oxidase, chain M
(29)
Cattle (Bos taurus)
(15)
06a
2dysM00
M:1-43
06b
2dysZ00
Z:1-43
Class
:
Mainly Alpha
(13335)
Architecture
:
Alpha Horseshoe
(399)
Topology
:
Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat
(320)
Homologous Superfamily
:
[code=1.25.40.40, no name defined]
(22)
Cattle (Bos taurus)
(15)
07a
2dysE00
E:5-109
07b
2dysR00
R:5-109
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Arc Repressor Mutant, subunit A
(1030)
Homologous Superfamily
:
Cytochrome C oxidase subunit h
(22)
Cattle (Bos taurus)
(15)
08a
2dysH00
H:7-85
08b
2dysU00
U:7-85
Topology
:
Cytochrome C Oxidase; Chain D
(22)
Homologous Superfamily
:
Cytochrome C Oxidase, chain D
(22)
Cattle (Bos taurus)
(15)
09a
2dysD00
D:4-147
09b
2dysQ00
Q:4-147
Topology
:
Helix Hairpins
(718)
Homologous Superfamily
:
[code=1.10.287.70, no name defined]
(106)
Cattle (Bos taurus)
(15)
10a
2dysC01
C:3-70
10b
2dysP01
P:3-70
Homologous Superfamily
:
[code=1.10.287.90, no name defined]
(33)
Cattle (Bos taurus)
(15)
11a
2dysB01
B:2-91
11b
2dysO01
O:2-91
Architecture
:
Up-down Bundle
(3216)
Topology
:
Cytochrome C Oxidase; Chain A
(41)
Homologous Superfamily
:
Cytochrome C Oxidase, chain A
(41)
Cattle (Bos taurus)
(15)
12a
2dysA00
A:2-514
12b
2dysN00
N:2-514
Topology
:
Four Helix Bundle (Hemerythrin (Met), subunit A)
(300)
Homologous Superfamily
:
[code=1.20.120.80, no name defined]
(26)
Cattle (Bos taurus)
(15)
13a
2dysC02
C:71-261
13b
2dysP02
P:71-261
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Cytochrome C Oxidase; Chain F
(22)
Homologous Superfamily
:
Cytochrome C Oxidase, chain F
(22)
Cattle (Bos taurus)
(15)
14a
2dysF00
F:1-98
14b
2dysS00
S:1-98
Topology
:
Immunoglobulin-like
(3897)
Homologous Superfamily
:
Cupredoxins - blue copper proteins
(420)
Cattle (Bos taurus)
(16)
15a
2dysB02
B:92-227
15b
2dysO02
O:92-227
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Asymmetric Unit 1
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select :A, :C
select chains 'A' and 'C'
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select all 'ALA' residues (Alanines) in chain 'A'
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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set label size to 20 (allowed range: 1-58)
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show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
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