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2DSO
Biol. Unit 4
Info
Asym.Unit (329 KB)
Biol.Unit 1 (60 KB)
Biol.Unit 2 (59 KB)
Biol.Unit 3 (59 KB)
Biol.Unit 4 (59 KB)
Biol.Unit 5 (60 KB)
Biol.Unit 6 (59 KB)
Biol.Unit 7 (164 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF D138N MUTANT OF DRP35, A 35KDA DRUG RESPONSIVE PROTEIN FROM STAPHYLOCOCCUS AUREUS
Authors
:
Y. Tanaka, Y. Ohki, K. Morikawa, M. Yao, N. Watanabe, T. Ohta, I. Tanaka
Date
:
04 Jul 06 (Deposition) - 12 Dec 06 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.10
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: D (1x)
Biol. Unit 5: E (1x)
Biol. Unit 6: F (1x)
Biol. Unit 7: A,B,C (1x)
Keywords
:
Beta Propeller, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Y. Tanaka, K. Morikawa, Y. Ohki, M. Yao, K. Tsumoto, N. Watanabe, T. Ohta, I. Tanaka
Structural And Mutational Analyses Of Drp35 From Staphylococcus Aureus: A Possible Mechanism For Its Lactonase Activity
J. Biol. Chem. V. 282 5770 2007
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Hetero Components
(1, 2)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
1b: CALCIUM ION (CAb)
1c: CALCIUM ION (CAc)
1d: CALCIUM ION (CAd)
1e: CALCIUM ION (CAe)
1f: CALCIUM ION (CAf)
1g: CALCIUM ION (CAg)
1h: CALCIUM ION (CAh)
1i: CALCIUM ION (CAi)
1j: CALCIUM ION (CAj)
1k: CALCIUM ION (CAk)
1l: CALCIUM ION (CAl)
2a: GLYCEROL (GOLa)
2b: GLYCEROL (GOLb)
2c: GLYCEROL (GOLc)
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No.
Name
Count
Type
Full Name
1
CA
-1
Ligand/Ion
CALCIUM ION
2
GOL
2
Ligand/Ion
GLYCEROL
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Sites
(4, 4)
Info
All Sites
1: AC4 (SOFTWARE)
2: BC1 (SOFTWARE)
3: BC4 (SOFTWARE)
4: BC6 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC4
SOFTWARE
GLU D:48 , ASN D:138 , ASN D:185 , ASP D:236 , SER D:237 , HOH D:5012 , HOH D:5018 , HOH D:5084
BINDING SITE FOR RESIDUE CA D 1004
2
BC1
SOFTWARE
SER D:110 , GLY D:112 , ASP D:130 , THR D:133 , TYR D:135
BINDING SITE FOR RESIDUE CA D 1010
3
BC4
SOFTWARE
CYS D:239 , ILE D:240 , GLN D:286 , PHE D:287 , GLY D:318 , HIS D:319 , HOH D:5016 , HOH D:5108
BINDING SITE FOR RESIDUE GOL D 5001
4
BC6
SOFTWARE
LYS D:16 , ILE D:23 , SER F:27 , THR F:31 , HOH F:1098
BINDING SITE FOR RESIDUE GOL D 5003
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are only available for the asymmetric unit)
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Exons
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SCOP Domains
(2, 6)
Info
All SCOP Domains
1a: SCOP_d2dsob_ (B:)
1b: SCOP_d2dsof_ (F:)
1c: SCOP_d2dsoc_ (C:)
1d: SCOP_d2dsod_ (D:)
1e: SCOP_d2dsoe_ (E:)
2a: SCOP_d2dsoa1 (A:5-324)
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Class
:
All beta proteins
(24004)
Fold
:
6-bladed beta-propeller
(327)
Superfamily
:
Calcium-dependent phosphotriesterase
(35)
Family
:
SGL-like
(31)
Protein domain
:
automated matches
(7)
Staphylococcus aureus [TaxId: 1280]
(3)
1a
d2dsob_
B:
1b
d2dsof_
F:
1c
d2dsoc_
C:
1d
d2dsod_
D:
1e
d2dsoe_
E:
Protein domain
:
Lactonase Drp35
(2)
Staphylococcus aureus [TaxId: 1280]
(2)
2a
d2dsoa1
A:5-324
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CATH Domains
(0, 0)
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Pfam Domains
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Chain D
Asymmetric Unit 1
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Asym.Unit (329 KB)
Header - Asym.Unit
Biol.Unit 1 (60 KB)
Header - Biol.Unit 1
Biol.Unit 2 (59 KB)
Header - Biol.Unit 2
Biol.Unit 3 (59 KB)
Header - Biol.Unit 3
Biol.Unit 4 (59 KB)
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Biol.Unit 5 (60 KB)
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Biol.Unit 6 (59 KB)
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Biol.Unit 7 (164 KB)
Header - Biol.Unit 7
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