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2DSO
Asym. Unit
Info
Asym.Unit (329 KB)
Biol.Unit 1 (60 KB)
Biol.Unit 2 (59 KB)
Biol.Unit 3 (59 KB)
Biol.Unit 4 (59 KB)
Biol.Unit 5 (60 KB)
Biol.Unit 6 (59 KB)
Biol.Unit 7 (164 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF D138N MUTANT OF DRP35, A 35KDA DRUG RESPONSIVE PROTEIN FROM STAPHYLOCOCCUS AUREUS
Authors
:
Y. Tanaka, Y. Ohki, K. Morikawa, M. Yao, N. Watanabe, T. Ohta, I. Tanaka
Date
:
04 Jul 06 (Deposition) - 12 Dec 06 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.10
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: D (1x)
Biol. Unit 5: E (1x)
Biol. Unit 6: F (1x)
Biol. Unit 7: A,B,C (1x)
Keywords
:
Beta Propeller, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Y. Tanaka, K. Morikawa, Y. Ohki, M. Yao, K. Tsumoto, N. Watanabe, T. Ohta, I. Tanaka
Structural And Mutational Analyses Of Drp35 From Staphylococcus Aureus: A Possible Mechanism For Its Lactonase Activity
J. Biol. Chem. V. 282 5770 2007
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Hetero Components
(2, 15)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
1b: CALCIUM ION (CAb)
1c: CALCIUM ION (CAc)
1d: CALCIUM ION (CAd)
1e: CALCIUM ION (CAe)
1f: CALCIUM ION (CAf)
1g: CALCIUM ION (CAg)
1h: CALCIUM ION (CAh)
1i: CALCIUM ION (CAi)
1j: CALCIUM ION (CAj)
1k: CALCIUM ION (CAk)
1l: CALCIUM ION (CAl)
2a: GLYCEROL (GOLa)
2b: GLYCEROL (GOLb)
2c: GLYCEROL (GOLc)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CA
12
Ligand/Ion
CALCIUM ION
2
GOL
3
Ligand/Ion
GLYCEROL
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Sites
(15, 15)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLU A:48 , ASN A:138 , ASN A:185 , ASP A:236 , SER A:237 , HOH A:5034 , HOH A:5104
BINDING SITE FOR RESIDUE CA A 1001
02
AC2
SOFTWARE
GLU B:48 , ASN B:138 , ASN B:185 , ASP B:236 , SER B:237 , HOH B:1011 , HOH B:1038 , HOH B:1151
BINDING SITE FOR RESIDUE CA B 1002
03
AC3
SOFTWARE
GLU C:48 , ASN C:138 , ASN C:185 , ASP C:236 , SER C:237 , HOH C:1037 , HOH C:1040 , HOH C:1133
BINDING SITE FOR RESIDUE CA C 1003
04
AC4
SOFTWARE
GLU D:48 , ASN D:138 , ASN D:185 , ASP D:236 , SER D:237 , HOH D:5012 , HOH D:5018 , HOH D:5084
BINDING SITE FOR RESIDUE CA D 1004
05
AC5
SOFTWARE
GLU E:48 , ASN E:138 , ASN E:185 , ASP E:236 , SER E:237 , HOH E:1072 , HOH E:1175
BINDING SITE FOR RESIDUE CA E 1005
06
AC6
SOFTWARE
GLU F:48 , ASN F:138 , ASN F:185 , ASP F:236 , SER F:237 , HOH F:1047 , HOH F:1139
BINDING SITE FOR RESIDUE CA F 1006
07
AC7
SOFTWARE
SER A:110 , GLY A:112 , ASP A:130 , THR A:133 , TYR A:135
BINDING SITE FOR RESIDUE CA A 1007
08
AC8
SOFTWARE
SER B:110 , GLY B:112 , ASP B:130 , THR B:133 , TYR B:135
BINDING SITE FOR RESIDUE CA B 1008
09
AC9
SOFTWARE
SER C:110 , THR C:111 , GLY C:112 , ASP C:130 , THR C:133 , ALA C:134 , TYR C:135 , HOH C:1120
BINDING SITE FOR RESIDUE CA C 1009
10
BC1
SOFTWARE
SER D:110 , GLY D:112 , ASP D:130 , THR D:133 , TYR D:135
BINDING SITE FOR RESIDUE CA D 1010
11
BC2
SOFTWARE
SER E:110 , GLY E:112 , ASP E:130 , THR E:133 , TYR E:135
BINDING SITE FOR RESIDUE CA E 1011
12
BC3
SOFTWARE
SER F:110 , GLY F:112 , ASP F:130 , THR F:133 , TYR F:135
BINDING SITE FOR RESIDUE CA F 1012
13
BC4
SOFTWARE
CYS D:239 , ILE D:240 , GLN D:286 , PHE D:287 , GLY D:318 , HIS D:319 , HOH D:5016 , HOH D:5108
BINDING SITE FOR RESIDUE GOL D 5001
14
BC5
SOFTWARE
LYS A:16 , HOH A:5097 , SER B:27 , HOH B:1093
BINDING SITE FOR RESIDUE GOL A 5002
15
BC6
SOFTWARE
LYS D:16 , ILE D:23 , SER F:27 , THR F:31 , HOH F:1098
BINDING SITE FOR RESIDUE GOL D 5003
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
(0, 0)
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 6)
Info
All SCOP Domains
1a: SCOP_d2dsob_ (B:)
1b: SCOP_d2dsof_ (F:)
1c: SCOP_d2dsoc_ (C:)
1d: SCOP_d2dsod_ (D:)
1e: SCOP_d2dsoe_ (E:)
2a: SCOP_d2dsoa1 (A:5-324)
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Protein Domains
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Organisms
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Class
:
All beta proteins
(24004)
Fold
:
6-bladed beta-propeller
(327)
Superfamily
:
Calcium-dependent phosphotriesterase
(35)
Family
:
SGL-like
(31)
Protein domain
:
automated matches
(7)
Staphylococcus aureus [TaxId: 1280]
(3)
1a
d2dsob_
B:
1b
d2dsof_
F:
1c
d2dsoc_
C:
1d
d2dsod_
D:
1e
d2dsoe_
E:
Protein domain
:
Lactonase Drp35
(2)
Staphylococcus aureus [TaxId: 1280]
(2)
2a
d2dsoa1
A:5-324
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CATH Domains
(0, 0)
Info
all CATH domains
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Pfam Domains
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Asymmetric Unit 1
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Asym.Unit (329 KB)
Header - Asym.Unit
Biol.Unit 1 (60 KB)
Header - Biol.Unit 1
Biol.Unit 2 (59 KB)
Header - Biol.Unit 2
Biol.Unit 3 (59 KB)
Header - Biol.Unit 3
Biol.Unit 4 (59 KB)
Header - Biol.Unit 4
Biol.Unit 5 (60 KB)
Header - Biol.Unit 5
Biol.Unit 6 (59 KB)
Header - Biol.Unit 6
Biol.Unit 7 (164 KB)
Header - Biol.Unit 7
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