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2DNT
Asym. Unit
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Asym.Unit (379 KB)
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Models
(20 )
Title
:
SOLUTION STRUCTURE OF RSGI RUH-064, A CHROMO DOMAIN FROM HUMAN CDNA
Authors
:
A. Z. M. Ruhul Momen, H. Hirota, K. Izumi, M. Yoshida, S. Yokoyama, Riken Structural Genomics/Proteomics Initiative (Rsgi)
Date
:
26 Apr 06 (Deposition) - 26 Oct 06 (Release) - 24 Feb 09 (Revision)
Method
:
SOLUTION NMR
Resolution
:
NOT APPLICABLE
Chains
:
Asym. Unit : A (20 x)
Keywords
:
Chromo Domain, Histone H3 Tail, Choromatin Organization Modifier, Structural Genomics, Nppsfa, National Project On Protein Structural And Functional Analyses, Riken Structural Genomics/Proteomics Initiative, Rsgi, Structural Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. Z. M. Ruhul Momen, H. Hirota, K. Izumi, M. Yoshida, S. Yokoyama
Solution Structure Of Rsgi Ruh-064, A Chromo Domain From Human Cdna
To Be Published
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
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Sites
(0, 0)
Info
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SAPs(SNPs)/Variants
(1, 1)
Info
(mutated residues are not available in "Model" view)
All SNPs/Variants
1: VAR_032939 (L13G, chain A, )
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dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_032939
A
60
G
CDYL1_HUMAN
Polymorphism
28360500
A
L
13
G
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(2, 2)
Info
All PROSITE Patterns/Profiles
1: CHROMO_2 (A:16-73)
2: CHROMO_1 (A:32-52)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
CHROMO_2
PS50013
Chromo and chromo shadow domain profile.
CDYL1_HUMAN
61-121
1
A:16-73
2
CHROMO_1
PS00598
Chromo domain signature.
CDYL1_HUMAN
79-99
1
A:32-52
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Exons
(2, 2)
Info
All Exons
Exon 1.4 (A:1-15 (gaps))
Exon 1.9d (A:16-78 (gaps))
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All Exon Boundaries
1: Boundary 1.2a/1.4
2: Boundary 1.4/1.9d
3: Boundary 1.9d/1.11b
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1b
ENST00000328908
1b
ENSE00001241571
chr6:
4706393-4706485
93
CDYL1_HUMAN
-
0
0
-
-
1.2a
ENST00000328908
2a
ENSE00002154059
chr6:
4715975-4716115
141
CDYL1_HUMAN
1-35
35
0
-
-
1.4
ENST00000328908
4
ENSE00001979662
chr6:
4734996-4735078
83
CDYL1_HUMAN
35-62
28
1
A:1-15 (gaps)
23
1.9d
ENST00000328908
9d
ENSE00001979701
chr6:
4891947-4892613
667
CDYL1_HUMAN
63-285
223
1
A:16-78 (gaps)
71
1.11b
ENST00000328908
11b
ENSE00001972080
chr6:
4935749-4936005
257
CDYL1_HUMAN
285-370
86
0
-
-
1.12
ENST00000328908
12
ENSE00001991020
chr6:
4937799-4937971
173
CDYL1_HUMAN
371-428
58
0
-
-
1.13b
ENST00000328908
13b
ENSE00001960715
chr6:
4943780-4943990
211
CDYL1_HUMAN
428-498
71
0
-
-
1.14
ENST00000328908
14
ENSE00001962725
chr6:
4952500-4952643
144
CDYL1_HUMAN
499-546
48
0
-
-
1.15e
ENST00000328908
15e
ENSE00001930193
chr6:
4954132-4955781
1650
CDYL1_HUMAN
547-598
52
0
-
-
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SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d2dnta1 (A:8-73)
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Class
:
All beta proteins
(24004)
Fold
:
SH3-like barrel
(1035)
Superfamily
:
Chromo domain-like
(82)
Family
:
Chromo domain
(41)
Protein domain
:
Chromodomain protein, Y-like isoform
(1)
Human (Homo sapiens) [TaxId: 9606]
(1)
1a
d2dnta1
A:8-73
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CATH Domains
(0, 0)
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Pfam Domains
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Chain A
Asymmetric Unit 1
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