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2DLL
Asym. Unit
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Asym.Unit (649 KB)
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Models
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Title
:
SOLUTION STRUCTURE OF THE IRF DOMAIN OF HUMAN INTERFERON REGULATOR FACTORS 4
Authors
:
H. P. Zhang, C. Kurosaki, M. Yoshida, F. Hayashi, S. Yokoyama, Riken Structural Genomics/Proteomics Initiative (Rsgi)
Date
:
20 Apr 06 (Deposition) - 20 Oct 06 (Release) - 24 Feb 09 (Revision)
Method
:
SOLUTION NMR
Resolution
:
NOT APPLICABLE
Chains
:
Asym. Unit : A (20 x)
Keywords
:
Irf Domain, Interferon Regulatory Factor 4, Lymphocyte Specific Interferon Regulatory Factor, Nf-Em5, Multiple Myeloma Oncogene 1, Structural Genomics, Nppsfa, National Project On Protein Structural And Functional Analyses, Riken Structural Genomics/Proteomics Initiative, Rsgi, Cytokine
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
H. P. Zhang, C. Kurosaki, M. Yoshida, F. Hayashi, S. Yokoyama
Solution Structure Of The Irf Domain Of Human Interferon Regulator Factors 4
To Be Published
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
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Sites
(0, 0)
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SAPs(SNPs)/Variants
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PROSITE Patterns/Profiles
(2, 2)
Info
All PROSITE Patterns/Profiles
1: IRF_2 (A:7-114)
2: IRF_1 (A:27-60)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
IRF_2
PS51507
IRF tryptophan pentad repeat DNA-binding domain profile.
IRF4_HUMAN
21-129
1
A:7-114
2
IRF_1
PS00601
IRF tryptophan pentad repeat DNA-binding domain signature.
IRF4_HUMAN
42-75
1
A:27-60
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Exons
(3, 3)
Info
All Exons
Exon 1.3a (A:1-57 (gaps))
Exon 1.4 (A:58-115)
Exon 1.5b (A:116-121)
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All Exon Boundaries
1: Boundary 1.1a/1.3a
2: Boundary 1.3a/1.4
3: Boundary 1.4/1.5b
4: Boundary 1.5b/1.6a
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000380956
1a
ENSE00001840815
chr6:
391739-391809
71
IRF4_HUMAN
-
0
0
-
-
1.3a
ENST00000380956
3a
ENSE00002181883
chr6:
393098-393368
271
IRF4_HUMAN
1-72
72
1
A:1-57 (gaps)
66
1.4
ENST00000380956
4
ENSE00001972842
chr6:
394821-395007
187
IRF4_HUMAN
73-135
63
1
A:58-115
58
1.5b
ENST00000380956
5b
ENSE00001974578
chr6:
395847-395935
89
IRF4_HUMAN
135-164
30
1
A:116-121
6
1.6a
ENST00000380956
6a
ENSE00001962113
chr6:
397108-397252
145
IRF4_HUMAN
165-213
49
0
-
-
1.7
ENST00000380956
7
ENSE00001990305
chr6:
398828-398935
108
IRF4_HUMAN
213-249
37
0
-
-
1.8
ENST00000380956
8
ENSE00001964366
chr6:
401424-401777
354
IRF4_HUMAN
249-367
119
0
-
-
1.9
ENST00000380956
9
ENSE00001990986
chr6:
405018-405130
113
IRF4_HUMAN
367-404
38
0
-
-
1.11c
ENST00000380956
11c
ENSE00001957207
chr6:
407455-411447
3993
IRF4_HUMAN
405-451
47
0
-
-
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SCOP Domains
(1, 1)
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1a: SCOP_d2dlla_ (A:)
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Class
:
All alpha proteins
(14657)
Fold
:
DNA/RNA-binding 3-helical bundle
(1299)
Superfamily
:
Winged helix DNA-binding domain
(576)
Family
:
automated matches
(118)
Protein domain
:
automated matches
(118)
Human (Homo sapiens) [TaxId: 9606]
(10)
1a
d2dlla_
A:
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CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_2dllA01 (A:8-113)
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Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Arc Repressor Mutant, subunit A
(1030)
Homologous Superfamily
:
'winged helix' repressor DNA binding domain
(507)
Human (Homo sapiens)
(70)
1a
2dllA01
A:8-113
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Pfam Domains
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Chain A
Asymmetric Unit 1
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