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2DK5
Asym. Unit
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Asym.Unit (474 KB)
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Models
(20 )
Title
:
SOLUTION STRUCTURE OF WINGED-HELIX DOMAIN IN RNA POLYMERASE III 39KDA POLYPEPTIDE
Authors
:
F. He, Y. Muto, M. Inoue, T. Kigawa, M. Shirouzu, T. Terada, S. Yokoyama, Riken Structural Genomics/Proteomics Initiative (Rsgi)
Date
:
06 Apr 06 (Deposition) - 06 Oct 06 (Release) - 24 Feb 09 (Revision)
Method
:
SOLUTION NMR
Resolution
:
NOT APPLICABLE
Chains
:
Asym. Unit : A (20 x)
Keywords
:
Nmr, Structural Genomics, Winged Helix Domain, Dna-Directed Rna Polymerase Iii, Nppsfa, National Project On Protein Structural And Functional Analyses, Riken Structural Genomics/Proteomics Initiative, Rsgi, Translation, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
F. He, Y. Muto, M. Inoue, T. Kigawa, M. Shirouzu, T. Terada, S. Yokoyama
Solution Structure Of Winged-Helix Domain In Rna Polymerase Iii 39Kda Polypeptide
To Be Published
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
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Sites
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PROSITE Patterns/Profiles
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Exons
(5, 5)
Info
All Exons
Exon 1.2a (A:1-3)
Exon 1.3a (A:4-13 (gaps))
Exon 1.4 (A:13-36)
Exon 1.5 (A:36-73)
Exon 1.6 (A:74-91 (gaps))
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1: Boundary 1.1a/1.2a
2: Boundary 1.2a/1.3a
3: Boundary 1.3a/1.4
4: Boundary 1.4/1.5
5: Boundary 1.5/1.6
6: Boundary 1.6/1.7
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000377603
1a
ENSE00001818900
chr20:
18447771-18448212
442
RPC6_HUMAN
1-21
21
0
-
-
1.2a
ENST00000377603
2a
ENSE00000906791
chr20:
18449588-18449705
118
RPC6_HUMAN
21-60
40
1
A:1-3
3
1.3a
ENST00000377603
3a
ENSE00000906792
chr20:
18453486-18453553
68
RPC6_HUMAN
61-83
23
1
A:4-13 (gaps)
23
1.4
ENST00000377603
4
ENSE00000906793
chr20:
18454035-18454102
68
RPC6_HUMAN
83-106
24
1
A:13-36
24
1.5
ENST00000377603
5
ENSE00000906794
chr20:
18455719-18455831
113
RPC6_HUMAN
106-143
38
1
A:36-73
38
1.6
ENST00000377603
6
ENSE00000906795
chr20:
18460682-18460825
144
RPC6_HUMAN
144-191
48
1
A:74-91 (gaps)
21
1.7
ENST00000377603
7
ENSE00000906796
chr20:
18461046-18461153
108
RPC6_HUMAN
192-227
36
0
-
-
1.8
ENST00000377603
8
ENSE00001262468
chr20:
18462263-18462454
192
RPC6_HUMAN
228-291
64
0
-
-
1.9c
ENST00000377603
9c
ENSE00001956364
chr20:
18464125-18465287
1163
RPC6_HUMAN
292-316
25
0
-
-
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SCOP Domains
(1, 1)
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1a: SCOP_d2dk5a1 (A:8-85)
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Class
:
All alpha proteins
(14657)
Fold
:
DNA/RNA-binding 3-helical bundle
(1299)
Superfamily
:
Winged helix DNA-binding domain
(576)
Family
:
RPO3F domain-like
(2)
Protein domain
:
DNA-directed RNA polymerase III subunit RPC6, RPO3F
(2)
Human (Homo sapiens) [TaxId: 9606]
(1)
1a
d2dk5a1
A:8-85
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CATH Domains
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Chain A
Asymmetric Unit 1
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