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2DK4
Asym. Unit
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Asym.Unit (398 KB)
Biol.Unit 1 (21 KB)
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Models
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Title
:
SOLUTION STRUCTURE OF SPLICING FACTOR MOTIF IN PRE-MRNA SPLICING FACTOR 18 (HPRP18)
Authors
:
F. He, Y. Muto, M. Inoue, T. Kigawa, M. Shirouzu, T. Terada, S. Yokoyama, Structural Genomics/Proteomics Initiative (Rsgi)
Date
:
06 Apr 06 (Deposition) - 06 Oct 06 (Release) - 21 Dec 11 (Revision)
Method
:
SOLUTION NMR
Resolution
:
NOT APPLICABLE
Chains
:
Asym. Unit : A (20 x)
Biol. Unit 1: A (1x)
Keywords
:
Sfm Domain, Pre-Mrna Splicing Factor 18, Hprp18, Structural Genomics, Nppsfa, National Project On Protein Structural And Functional Analyses, Riken Structural Genomics/Proteomics Initiative, Rsgi, Gene Regulation
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
F. He, M. Inoue, T. Kigawa, M. Takahashi, K. Kuwasako, K. Tsuda, N. Kobayashi, T. Terada, M. Shirouzu, P. Guntert, S. Yokoyama, Y. Muto
Solution Structure Of The Splicing Factor Motif (Sfm) Of Th Human Prp18 Protein
Proteins: 2011 Struct. , Funct. , Genet.
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Hetero Components
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Sites
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Exons
(3, 3)
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Exon 1.5 (A:1-31)
Exon 1.6 (A:32-69)
Exon 1.7 (A:70-76 (gaps))
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1: Boundary 1.3/1.5
2: Boundary 1.5/1.6
3: Boundary 1.6/1.7
4: Boundary 1.7/1.8b
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000378572
1a
ENSE00001852793
chr10:
13628927-13629152
226
PRP18_HUMAN
1-22
22
0
-
-
1.3
ENST00000378572
3
ENSE00001094835
chr10:
13639458-13639535
78
PRP18_HUMAN
23-48
26
0
-
-
1.5
ENST00000378572
5
ENSE00001094840
chr10:
13642244-13642348
105
PRP18_HUMAN
49-83
35
1
A:1-31
31
1.6
ENST00000378572
6
ENSE00001094838
chr10:
13647631-13647744
114
PRP18_HUMAN
84-121
38
1
A:32-69
38
1.7
ENST00000378572
7
ENSE00001094826
chr10:
13652039-13652185
147
PRP18_HUMAN
122-170
49
1
A:70-76 (gaps)
28
1.8b
ENST00000378572
8b
ENSE00001094844
chr10:
13653615-13653683
69
PRP18_HUMAN
171-193
23
0
-
-
1.9
ENST00000378572
9
ENSE00001094845
chr10:
13655741-13655881
141
PRP18_HUMAN
194-240
47
0
-
-
1.10b
ENST00000378572
10b
ENSE00001094850
chr10:
13656015-13656086
72
PRP18_HUMAN
241-264
24
0
-
-
1.11
ENST00000378572
11
ENSE00001402863
chr10:
13658398-13658553
156
PRP18_HUMAN
265-316
52
0
-
-
1.12c
ENST00000378572
12c
ENSE00001883918
chr10:
13672260-13672868
609
PRP18_HUMAN
317-342
26
0
-
-
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SCOP Domains
(1, 1)
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1a: SCOP_d2dk4a1 (A:8-70)
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Class
:
All alpha proteins
(14657)
Fold
:
LEM/SAP HeH motif
(33)
Superfamily
:
PRP4-like
(1)
Family
:
PRP4-like
(1)
Protein domain
:
Pre-mRNA-splicing factor 18
(1)
Human (Homo sapiens) [TaxId: 9606]
(1)
1a
d2dk4a1
A:8-70
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Chain A
Asymmetric Unit 1
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