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2DGS
Asym. Unit
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Asym.Unit (509 KB)
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Models
(20 )
Title
:
SOLUTION STRUCTURE OF THE SECOND RNA BINDING DOMAIN IN DAZ-ASSOCIATED PROTEIN 1
Authors
:
C. Abe, Y. Muto, M. Inoue, T. Kigawa, T. Terada, M. Shirouzu, S. Yokoyama, Riken Structural Genomics/Proteomics Initiative (Rsgi)
Date
:
15 Mar 06 (Deposition) - 15 Sep 06 (Release) - 24 Feb 09 (Revision)
Method
:
SOLUTION NMR
Resolution
:
NOT APPLICABLE
Chains
:
Asym. Unit : A (20 x)
Keywords
:
Rrm Domain, Structural Genomics, Nppsfa, National Project On Protein Structural And Functional Analyses, Riken Structural Genomics/Proteomics Initiative, Rsgi, Rna Binding Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
C. Abe, Y. Muto, M. Inoue, T. Terada, T. Kigawa, M. Shirouzu, S. Yokoyama
Solution Structure Of The Second Rna Binding Domain In Daz-Associated Protein 1
To Be Published
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
Info
All Hetero Components
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Sites
(0, 0)
Info
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Sorry, no Info available
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SAPs(SNPs)/Variants
(0, 0)
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: RRM (-|A:113-190)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
RRM
PS50102
Eukaryotic RNA Recognition Motif (RRM) profile.
DAZP1_HUMAN
10-97
113-190
1
-
A:113-190
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Exons
(5, 5)
Info
All Exons
Exon 1.4 (A:103-105)
Exon 1.5 (A:106-138 (gaps))
Exon 1.6 (A:139-155)
Exon 1.7 (A:155-182)
Exon 1.8 (A:183-201 (gaps))
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1: Boundary 1.3/1.4
2: Boundary 1.4/1.5
3: Boundary 1.5/1.6
4: Boundary 1.6/1.7
5: Boundary 1.7/1.8
6: Boundary 1.8/1.9
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000233078
1
ENSE00001180932
chr19:
1407584-1407801
218
DAZP1_HUMAN
1-10
10
0
-
-
1.2
ENST00000233078
2
ENSE00001266753
chr19:
1417499-1417539
41
DAZP1_HUMAN
10-24
15
0
-
-
1.3
ENST00000233078
3
ENSE00001266707
chr19:
1418203-1418369
167
DAZP1_HUMAN
24-79
56
0
-
-
1.4
ENST00000233078
4
ENSE00001266698
chr19:
1418665-1418730
66
DAZP1_HUMAN
80-101
22
1
A:103-105
3
1.5
ENST00000233078
5
ENSE00000336445
chr19:
1421147-1421257
111
DAZP1_HUMAN
102-138
37
1
A:106-138 (gaps)
35
1.6
ENST00000233078
6
ENSE00000336446
chr19:
1422347-1422395
49
DAZP1_HUMAN
139-155
17
1
A:139-155
17
1.7
ENST00000233078
7
ENSE00000752956
chr19:
1425877-1425959
83
DAZP1_HUMAN
155-182
28
1
A:155-182
28
1.8
ENST00000233078
8
ENSE00000752955
chr19:
1428841-1428994
154
DAZP1_HUMAN
183-234
52
1
A:183-201 (gaps)
35
1.9
ENST00000233078
9
ENSE00000752954
chr19:
1429966-1429995
30
DAZP1_HUMAN
234-244
11
0
-
-
1.10
ENST00000233078
10
ENSE00000752953
chr19:
1430221-1430361
141
DAZP1_HUMAN
244-291
48
0
-
-
1.11
ENST00000233078
11
ENSE00000752952
chr19:
1432513-1432689
177
DAZP1_HUMAN
291-350
60
0
-
-
1.13
ENST00000233078
13
ENSE00001605245
chr19:
1434736-1435683
948
DAZP1_HUMAN
350-407
58
0
-
-
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SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d2dgsa_ (A:)
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Protein Domains
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)
(
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Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Ferredoxin-like
(1795)
Superfamily
:
RNA-binding domain, RBD
(289)
Family
:
automated matches
(67)
Protein domain
:
automated matches
(67)
Human (Homo sapiens) [TaxId: 9606]
(56)
1a
d2dgsa_
A:
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CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_2dgsA01 (A:103-191)
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Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Alpha-Beta Plaits
(1688)
Homologous Superfamily
:
[code=3.30.70.330, no name defined]
(307)
Human (Homo sapiens)
(81)
1a
2dgsA01
A:103-191
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Pfam Domains
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Chain A
Asymmetric Unit 1
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