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2D5R
Asym. Unit
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Asym.Unit (68 KB)
Biol.Unit 1 (64 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF A TOB-HCAF1 COMPLEX
Authors
:
M. Horiuchi, N. N. Suzuki, N. Muroya, K. Takahasi, M. Nishida, Y. Yoshida, N. Ikematsu, T. Nakamura, J. Kawamura-Tsuzuku, T. Yamamoto, F. Inagaki
Date
:
04 Nov 05 (Deposition) - 12 Dec 06 (Release) - 06 Oct 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.50
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Poly(A) Deadenylase, Antiproliferative Protein, Transcription
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. Horiuchi, K. Takeuchi, N. Noda, N. Muroya, T. Suzuki, T. Nakamura, J. Kawamura-Tsuzuku, K. Takahasi, T. Yamamoto, F. Inagaki
Structural Basis For The Antiproliferative Activity Of The Tob-Hcaf1 Complex.
J. Biol. Chem. V. 284 13244 2009
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
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Sites
(0, 0)
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SAPs(SNPs)/Variants
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PROSITE Patterns/Profiles
(2, 2)
Info
All PROSITE Patterns/Profiles
1: BTG_1 (B:64-84)
2: BTG_2 (B:110-129)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
BTG_1
PS00960
BTG family signature 1.
TOB1_HUMAN
40-60
1
B:64-84
2
BTG_2
PS01203
BTG family signature 2.
TOB1_HUMAN
86-105
1
B:110-129
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Exons
(7, 7)
Info
All Exons
Exon 1.4a (B:25-139)
Exon 2.5a (A:11-39)
Exon 2.8c (A:40-104)
Exon 2.9c (A:104-158)
Exon 2.10b (A:158-206)
Exon 2.11b (A:207-243)
Exon 2.12b (A:244-262)
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All Exon Boundaries
1: Boundary 1.2/1.4a
2: Boundary 1.4a/-
3: Boundary 2.1a/2.5a
4: Boundary 2.5a/2.8c
5: Boundary 2.8c/2.9c
6: Boundary 2.9c/2.10b
7: Boundary 2.10b/2.11b
8: Boundary 2.11b/2.12b
9: Boundary 2.12b/-
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000268957
1
ENSE00001757872
chr17:
48945339-48945166
174
TOB1_HUMAN
-
0
0
-
-
1.2
ENST00000268957
2
ENSE00001685727
chr17:
48944963-48944855
109
TOB1_HUMAN
-
0
0
-
-
1.4a
ENST00000268957
4a
ENSE00000947126
chr17:
48941524-48940341
1184
TOB1_HUMAN
1-394
394
1
B:25-139
115
2.1a
ENST00000361272
1a
ENSE00001299172
chr8:
17104387-17104184
204
CNOT7_HUMAN
-
0
0
-
-
2.5a
ENST00000361272
5a
ENSE00002152109
chr8:
17102756-17102545
212
CNOT7_HUMAN
1-39
39
1
A:11-39
29
2.8c
ENST00000361272
8c
ENSE00000681996
chr8:
17100694-17100501
194
CNOT7_HUMAN
40-104
65
1
A:40-104
65
2.9c
ENST00000361272
9c
ENSE00000681993
chr8:
17094882-17094721
162
CNOT7_HUMAN
104-158
55
1
A:104-158
55
2.10b
ENST00000361272
10b
ENSE00000681990
chr8:
17092369-17092225
145
CNOT7_HUMAN
158-206
49
1
A:158-206
49
2.11b
ENST00000361272
11b
ENSE00000681987
chr8:
17090046-17089936
111
CNOT7_HUMAN
207-243
37
1
A:207-243
37
2.12b
ENST00000361272
12b
ENSE00001321978
chr8:
17088357-17086737
1621
CNOT7_HUMAN
244-285
42
1
A:244-262
19
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SCOP Domains
(2, 2)
Info
All SCOP Domains
1a: SCOP_d2d5rb1 (B:24-139)
2a: SCOP_d2d5ra1 (A:11-262)
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)
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)
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
BTG domain-like
(5)
Superfamily
:
BTG domain-like
(5)
Family
:
BTG domain-like
(5)
Protein domain
:
TOB1, N-terminal domain
(2)
Human (Homo sapiens) [TaxId: 9606]
(2)
1a
d2d5rb1
B:24-139
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Ribonuclease H-like motif
(1424)
Superfamily
:
Ribonuclease H-like
(775)
Family
:
CAF1-like ribonuclease
(3)
Protein domain
:
CCR4-NOT transcription complex subunit 7, CAF1
(1)
Human (Homo sapiens) [TaxId: 9606]
(1)
2a
d2d5ra1
A:11-262
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CATH Domains
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