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2D2W
Asym. Unit
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Asym.Unit (560 KB)
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Models
(20 )
Title
:
SOLUTION STRUCTURE AND DYNAMICS OF THE DNA-BINDING DOMAIN OF MYOCYTE NUCLEAR FACTOR
Authors
:
W. -J. Chuang, C. -H. Chang, W. -Y. Jeng, Y. -P. Chu
Date
:
19 Sep 05 (Deposition) - 05 Sep 06 (Release) - 24 Feb 09 (Revision)
Method
:
SOLUTION NMR
Resolution
:
NOT APPLICABLE
Chains
:
Asym. Unit : A (20 x)
Keywords
:
Dna-Binding Domain, Winged-Helix, Forkhead, Nmr, Dna Binding Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
C. -H. Chang, Y. -P. Chu, W. -Y. Jeng, W. -J. Chuang
Solution Structure And Backbone Dynamics Of The Dna-Binding Domain Of Myocyte Nuclear Factor (Foxk1)
To Be Published
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
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Sites
(0, 0)
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SAPs(SNPs)/Variants
(0, 0)
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PROSITE Patterns/Profiles
(3, 3)
Info
All PROSITE Patterns/Profiles
1: FORK_HEAD_1 (A:3-16)
2: FORK_HEAD_3 (A:3-98)
3: FORK_HEAD_2 (A:47-53)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
FORK_HEAD_1
PS00657
Fork head domain signature 1.
FOXK1_MOUSE
291-304
1
A:3-16
2
FORK_HEAD_3
PS50039
Fork head domain profile.
FOXK1_MOUSE
291-386
1
A:3-98
3
FORK_HEAD_2
PS00658
Fork head domain signature 2.
FOXK1_MOUSE
335-341
1
A:47-53
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Exons
(2, 2)
Info
All Exons
Exon 1.4 (A:1-48)
Exon 1.5 (A:49-101)
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All Exon Boundaries
1: Boundary 1.3/1.4
2: Boundary 1.4/1.5
3: Boundary 1.5/1.6
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENSMUST00000072837
1a
ENSMUSE00000590046
chr5:
142877451-142877995
545
FOXK1_MOUSE
1-173
173
0
-
-
1.2
ENSMUST00000072837
2
ENSMUSE00000474194
chr5:
142911095-142911280
186
FOXK1_MOUSE
173-235
63
0
-
-
1.3
ENSMUST00000072837
3
ENSMUSE00000590045
chr5:
142924641-142924797
157
FOXK1_MOUSE
235-287
53
0
-
-
1.4
ENSMUST00000072837
4
ENSMUSE00000534632
chr5:
142926195-142926341
147
FOXK1_MOUSE
288-336
49
1
A:1-48
48
1.5
ENSMUST00000072837
5
ENSMUSE00000473425
chr5:
142927393-142927586
194
FOXK1_MOUSE
337-401
65
1
A:49-101
53
1.6
ENSMUST00000072837
6
ENSMUSE00000472392
chr5:
142929463-142929629
167
FOXK1_MOUSE
401-457
57
0
-
-
1.7
ENSMUST00000072837
7
ENSMUSE00000509938
chr5:
142929714-142929998
285
FOXK1_MOUSE
457-552
96
0
-
-
1.8
ENSMUST00000072837
8
ENSMUSE00000590040
chr5:
142931307-142931531
225
FOXK1_MOUSE
552-627
76
0
-
-
1.9b
ENSMUST00000072837
9b
ENSMUSE00000590039
chr5:
142932430-142937968
5539
FOXK1_MOUSE
627-719
93
0
-
-
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SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d2d2wa_ (A:)
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
DNA/RNA-binding 3-helical bundle
(1299)
Superfamily
:
Winged helix DNA-binding domain
(576)
Family
:
Forkhead DNA-binding domain
(17)
Protein domain
:
automated matches
(9)
Mouse (Mus musculus) [TaxId: 10090]
(2)
1a
d2d2wa_
A:
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CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_2d2wA00 (A:1-101)
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Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Arc Repressor Mutant, subunit A
(1030)
Homologous Superfamily
:
'winged helix' repressor DNA binding domain
(507)
House mouse (Mus musculus)
(11)
1a
2d2wA00
A:1-101
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Pfam Domains
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Chain A
Asymmetric Unit 1
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