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2D1X
Asym. Unit
Info
Asym.Unit (52 KB)
Biol.Unit 1 (25 KB)
Biol.Unit 2 (25 KB)
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(1)
Title
:
THE CRYSTAL STRUCTURE OF THE CORTACTIN-SH3 DOMAIN AND AMAP1-PEPTIDE COMPLEX
Authors
:
S. Hashimoto, M. Hirose, A. Hashimoto, M. Morishige, A. Yamada, H. Hosaka, K. Akagi, E. Ogawa, C. Oneyama, T. Agatsuma, M. Okada, H. Kobayashi, H. Wada, H. Nakano, T. Ikegami, A. Nakagawa, H. Sabe
Date
:
01 Sep 05 (Deposition) - 25 Apr 06 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.90
Chains
:
Asym. Unit : A,B,C,D,P,Q
Biol. Unit 1: A,B,P (1x)
Biol. Unit 2: C,D,Q (1x)
Keywords
:
Sh3, Proline-Rich, Complex, Cell Invasion
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. Hashimoto, M. Hirose, A. Hashimoto, M. Morishige, A. Yamada, H. Hosaka, K. Akagi, E. Ogawa, C. Oneyama, T. Agatsuma, M. Okada, H. Kobayashi, H. Wada, H. Nakano, T. Ikegami, A. Nakagawa, H. Sabe
Targeting Amap1 And Cortactin Binding Bearing An Atypical Src Homology 3/Proline Interface For Prevention Of Breast Cancer Invasion And Metastasis.
Proc. Natl. Acad. Sci. Usa V. 103 7036 2006
(for further references see the
PDB file header
)
[
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]
Hetero Components
(1, 2)
Info
All Hetero Components
1a: SULFATE ION (SO4a)
1b: SULFATE ION (SO4b)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
SO4
2
Ligand/Ion
SULFATE ION
[
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Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
HOH B:80 , LYS P:3 , ARG P:4
BINDING SITE FOR RESIDUE SO4 P 1001
2
AC2
SOFTWARE
LYS Q:3 , ARG Q:4 , HOH Q:73
BINDING SITE FOR RESIDUE SO4 Q 1002
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 4)
Info
All PROSITE Patterns/Profiles
1: SH3 (A:3-61,B:3-61,C:3-61,D:3-61)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
SH3
PS50002
Src homology 3 (SH3) domain profile.
SRC8_HUMAN
492-550
4
A:3-61
B:3-61
C:3-61
D:3-61
[
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Exons
(3, 9)
Info
All Exons
Exon 1.15 (- | - | C:-4-0 (gaps) | -)
Exon 1.16b (A:2-17 | B:3-17 | C:1-17 | D:3-17)
Exon 1.17c (A:17-61 | B:17-61 | C:17-61 | D:17...)
View:
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All Exon Boundaries
1: Boundary 1.14/1.15
2: Boundary 1.15/1.16b
3: Boundary 1.16b/1.17c
4: Boundary 1.17c/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1b
ENST00000301843
1b
ENSE00001330492
chr11:
70244612-70244720
109
SRC8_HUMAN
-
0
0
-
-
1.2
ENST00000301843
2
ENSE00001119698
chr11:
70251371-70251467
97
SRC8_HUMAN
-
0
0
-
-
1.3a
ENST00000301843
3a
ENSE00002157616
chr11:
70253404-70253490
87
SRC8_HUMAN
1-29
29
0
-
-
1.4a
ENST00000301843
4a
ENSE00001064324
chr11:
70253624-70253697
74
SRC8_HUMAN
30-54
25
0
-
-
1.5
ENST00000301843
5
ENSE00001064322
chr11:
70255937-70256066
130
SRC8_HUMAN
54-97
44
0
-
-
1.7a
ENST00000301843
7a
ENSE00001064330
chr11:
70260648-70260758
111
SRC8_HUMAN
98-134
37
0
-
-
1.8a
ENST00000301843
8a
ENSE00001064328
chr11:
70261769-70261823
55
SRC8_HUMAN
135-153
19
0
-
-
1.9b
ENST00000301843
9b
ENSE00001064327
chr11:
70263119-70263229
111
SRC8_HUMAN
153-190
38
0
-
-
1.10b
ENST00000301843
10b
ENSE00001064326
chr11:
70265852-70265962
111
SRC8_HUMAN
190-227
38
0
-
-
1.10g
ENST00000301843
10g
ENSE00001064329
chr11:
70266506-70266616
111
SRC8_HUMAN
227-264
38
0
-
-
1.11a
ENST00000301843
11a
ENSE00001230269
chr11:
70267576-70267686
111
SRC8_HUMAN
264-301
38
0
-
-
1.11f
ENST00000301843
11f
ENSE00001119696
chr11:
70269046-70269101
56
SRC8_HUMAN
301-319
19
0
-
-
1.12
ENST00000301843
12
ENSE00000737459
chr11:
70271438-70271507
70
SRC8_HUMAN
320-343
24
0
-
-
1.13b
ENST00000301843
13b
ENSE00002141022
chr11:
70275157-70275305
149
SRC8_HUMAN
343-392
50
0
-
-
1.14
ENST00000301843
14
ENSE00000831428
chr11:
70277297-70277386
90
SRC8_HUMAN
393-422
30
0
-
-
1.15
ENST00000301843
15
ENSE00000831427
chr11:
70279207-70279384
178
SRC8_HUMAN
423-482
60
1
-
-
C:-4-0 (gaps)
-
-
-
13
-
1.16b
ENST00000301843
16b
ENSE00000831426
chr11:
70279753-70279824
72
SRC8_HUMAN
482-506
25
4
A:2-17
B:3-17
C:1-17
D:3-17
16
15
17
15
1.17c
ENST00000301843
17c
ENSE00001893938
chr11:
70281132-70282681
1550
SRC8_HUMAN
506-550
45
4
A:17-61
B:17-61
C:17-61
D:17-61
45
45
45
45
[
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SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d2d1xa_ (A:)
1b: SCOP_d2d1xb_ (B:)
1c: SCOP_d2d1xc_ (C:)
1d: SCOP_d2d1xd_ (D:)
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Protein Domains
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Organisms
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(
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Class
:
All beta proteins
(24004)
Fold
:
SH3-like barrel
(1035)
Superfamily
:
SH3-domain
(369)
Family
:
automated matches
(114)
Protein domain
:
automated matches
(114)
Human (Homo sapiens) [TaxId: 9606]
(74)
1a
d2d1xa_
A:
1b
d2d1xb_
B:
1c
d2d1xc_
C:
1d
d2d1xd_
D:
[
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CATH Domains
(1, 4)
Info
all CATH domains
1a: CATH_2d1xC00 (C:-4-61)
1b: CATH_2d1xA00 (A:2-61)
1c: CATH_2d1xB00 (B:3-61)
1d: CATH_2d1xD00 (D:3-61)
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Homologous Superfamilies
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(
)
Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Roll
(1513)
Topology
:
SH3 type barrels.
(648)
Homologous Superfamily
:
SH3 Domains
(267)
Human (Homo sapiens)
(133)
1a
2d1xC00
C:-4-61
1b
2d1xA00
A:2-61
1c
2d1xB00
B:3-61
1d
2d1xD00
D:3-61
[
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Pfam Domains
(0, 0)
Info
all PFAM domains
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(currently selected atoms:
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Hetero
Ligand
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Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
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Chain P
Chain Q
Asymmetric Unit 1
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Asym.Unit (52 KB)
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