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2CXY
Asym. Unit
Info
Asym.Unit (26 KB)
Biol.Unit 1 (22 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE HBAF250B AT-RICH INTERACTION DOMAIN (ARID)
Authors
:
A. Shimada, H. Niwa, S. Yokoyama, Riken Structural Genomics/Proteomics Initiative (Rsgi)
Date
:
01 Jul 05 (Deposition) - 10 Oct 06 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.60
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Dna-Binding Domain, Structural Genomics, Nppsfa, National Project On Protein Structural And Functional Analyses, Riken Structural Genomics/Proteomics Initiative, Rsgi, Dna Binding Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. Shimada, H. Niwa, S. Yokoyama
Crystal Structure Of The Hbaf250B At-Rich Interaction Domain (Arid)
To Be Published
(for further references see the
PDB file header
)
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Hetero Components
(1, 1)
Info
All Hetero Components
1a: SELENOMETHIONINE (MSEa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
MSE
1
Mod. Amino Acid
SELENOMETHIONINE
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Sites
(0, 0)
Info
All Sites
View:
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Label:
Sorry, no Info available
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SAPs(SNPs)/Variants
(1, 1)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_067678 (V52I, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_067678
V
1092
I
ARI1B_HUMAN
Polymorphism
---
A
V
52
I
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: ARID (A:13-104)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ARID
PS51011
ARID domain profile.
ARI1B_HUMAN
1053-1144
1
A:13-104
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Exons
(2, 2)
Info
All Exons
Exon 1.14a (A:1-62)
Exon 1.15a (A:63-114)
View:
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All Exon Boundaries
1: Boundary 1.12/1.14a
2: Boundary 1.14a/1.15a
3: Boundary 1.15a/1.16
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000350026
1a
ENSE00002076297
chr6:
157099063-157100605
1543
ARI1B_HUMAN
1-514
514
0
-
-
1.2
ENST00000350026
2
ENSE00002193707
chr6:
157150361-157150555
195
ARI1B_HUMAN
515-579
65
0
-
-
1.5b
ENST00000350026
5b
ENSE00002196548
chr6:
157222510-157222659
150
ARI1B_HUMAN
580-629
50
0
-
-
1.6a
ENST00000350026
6a
ENSE00001744727
chr6:
157256600-157256710
111
ARI1B_HUMAN
630-666
37
0
-
-
1.7a
ENST00000350026
7a
ENSE00002178237
chr6:
157405796-157406039
244
ARI1B_HUMAN
667-748
82
0
-
-
1.8a
ENST00000350026
8a
ENSE00002147736
chr6:
157431606-157431695
90
ARI1B_HUMAN
748-778
31
0
-
-
1.9a
ENST00000350026
9a
ENSE00000765473
chr6:
157454162-157454341
180
ARI1B_HUMAN
778-838
61
0
-
-
1.10a
ENST00000350026
10a
ENSE00001332230
chr6:
157469758-157470085
328
ARI1B_HUMAN
838-947
110
0
-
-
1.11
ENST00000350026
11
ENSE00002140579
chr6:
157488174-157488319
146
ARI1B_HUMAN
947-996
50
0
-
-
1.12
ENST00000350026
12
ENSE00002197298
chr6:
157495142-157495251
110
ARI1B_HUMAN
996-1032
37
0
-
-
1.14a
ENST00000350026
14a
ENSE00001696442
chr6:
157502103-157502312
210
ARI1B_HUMAN
1033-1102
70
1
A:1-62
62
1.15a
ENST00000350026
15a
ENSE00000975824
chr6:
157505365-157505569
205
ARI1B_HUMAN
1103-1171
69
1
A:63-114
52
1.16
ENST00000350026
16
ENSE00001142078
chr6:
157510776-157510914
139
ARI1B_HUMAN
1171-1217
47
0
-
-
1.17
ENST00000350026
17
ENSE00001142072
chr6:
157511172-157511344
173
ARI1B_HUMAN
1217-1275
59
0
-
-
1.18
ENST00000350026
18
ENSE00001142064
chr6:
157517299-157517449
151
ARI1B_HUMAN
1275-1325
51
0
-
-
1.19
ENST00000350026
19
ENSE00001142057
chr6:
157519945-157520041
97
ARI1B_HUMAN
1325-1357
33
0
-
-
1.20a
ENST00000350026
20a
ENSE00000975829
chr6:
157521839-157522622
784
ARI1B_HUMAN
1358-1619
262
0
-
-
1.21
ENST00000350026
21
ENSE00001142049
chr6:
157525000-157525130
131
ARI1B_HUMAN
1619-1662
44
0
-
-
1.22c
ENST00000350026
22c
ENSE00002020018
chr6:
157527301-157530284
2984
ARI1B_HUMAN
1663-2236
574
0
-
-
[
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SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d2cxya_ (A:)
View:
Select:
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Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
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)
(
)
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(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
DNA/RNA-binding 3-helical bundle
(1299)
Superfamily
:
ARID-like
(14)
Family
:
ARID domain
(12)
Protein domain
:
automated matches
(5)
Human (Homo sapiens) [TaxId: 9606]
(4)
1a
d2cxya_
A:
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CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_2cxyA00 (A:1-114)
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)
(
)
Organisms
(
)
(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
DNA polymerase; domain 1
(617)
Homologous Superfamily
:
[code=1.10.150.60, no name defined]
(11)
Human (Homo sapiens)
(7)
1a
2cxyA00
A:1-114
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Chain A
Asymmetric Unit 1
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Asym.Unit (26 KB)
Header - Asym.Unit
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Header - Biol.Unit 1
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