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2CPE
Asym. Unit
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Asym.Unit (558 KB)
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Models
(20 )
Title
:
SOLUTION STRUCTURE OF THE RNA RECOGNITION MOTIF OF EWING SARCOMA(EWS) PROTEIN
Authors
:
T. Nagata, Y. Muto, M. Inoue, T. Kigawa, T. Terada, M. Shirouzu, S. Yokoyama, Riken Structural Genomics/Proteomics Initiative (Rsgi)
Date
:
19 May 05 (Deposition) - 19 Nov 05 (Release) - 24 Feb 09 (Revision)
Method
:
SOLUTION NMR
Resolution
:
NOT APPLICABLE
Chains
:
Asym. Unit : A (20 x)
Keywords
:
Rna Recognition Motif, Rrm, Rnp, Structural Genomics, Nppsfa, National Project On Protein Structural And Functional Analyses, Riken Structural Genomics/Proteomics Initiative, Rsgi, Oncoprotein
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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Reference
:
T. Nagata, Y. Muto, M. Inoue, T. Kigawa, T. Terada, M. Shirouzu, S. Yokoyama
Solution Structure Of The Rna Recognition Motif Of Ewing Sarcoma(Ews) Protein
To Be Published
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
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Sites
(0, 0)
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SAPs(SNPs)/Variants
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: RRM (A:361-447)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
RRM
PS50102
Eukaryotic RNA Recognition Motif (RRM) profile.
EWS_HUMAN
361-447
1
A:361-447
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Exons
(6, 6)
Info
All Exons
Exon 1.10d (A:346-346)
Exon 1.10k (A:346-352)
Exon 1.11a (A:353-388)
Exon 1.12b (A:389-432)
Exon 1.13 (A:432-454)
Exon 1.14a (A:455-458)
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All Exon Boundaries
1: Boundary 1.9c/1.10d
2: Boundary 1.10d/1.10k
3: Boundary 1.10k/1.10n
4: Boundary 1.10n/1.11a
5: Boundary 1.11a/1.12b
6: Boundary 1.12b/1.13
7: Boundary 1.13/1.14a
8: Boundary 1.14a/1.14e
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1b
ENST00000397938
1b
ENSE00001884360
chr22:
29664007-29664338
332
EWS_HUMAN
1-5
5
0
-
-
1.3
ENST00000397938
3
ENSE00001301837
chr22:
29668205-29668241
37
EWS_HUMAN
5-17
13
0
-
-
1.4a
ENST00000397938
4a
ENSE00001326177
chr22:
29668369-29668420
52
EWS_HUMAN
17-34
18
0
-
-
1.5c
ENST00000397938
5c
ENSE00001310992
chr22:
29669730-29669853
124
EWS_HUMAN
35-76
42
0
-
-
1.7c
ENST00000397938
7c
ENSE00001297760
chr22:
29674019-29674205
187
EWS_HUMAN
76-138
63
0
-
-
1.8c
ENST00000397938
8c
ENSE00002164144
chr22:
29678379-29678546
168
EWS_HUMAN
138-194
57
0
-
-
1.9c
ENST00000397938
9c
ENSE00002186154
chr22:
29682912-29683123
212
EWS_HUMAN
194-265
72
0
-
-
1.10d
ENST00000397938
10d
ENSE00001787873
chr22:
29684595-29684775
181
EWS_HUMAN
265-325
61
1
A:346-346
1
1.10k
ENST00000397938
10k
ENSE00001300293
chr22:
29687551-29687588
38
EWS_HUMAN
325-338
14
1
A:346-352
7
1.10n
ENST00000397938
10n
ENSE00001645450
chr22:
29688126-29688158
33
EWS_HUMAN
338-349
12
0
-
-
1.11a
ENST00000397938
11a
ENSE00001803203
chr22:
29688477-29688595
119
EWS_HUMAN
349-388
40
1
A:353-388
36
1.12b
ENST00000397938
12b
ENSE00001668989
chr22:
29692229-29692358
130
EWS_HUMAN
389-432
44
1
A:389-432
44
1.13
ENST00000397938
13
ENSE00001774808
chr22:
29693817-29693939
123
EWS_HUMAN
432-473
42
1
A:432-454
23
1.14a
ENST00000397938
14a
ENSE00001666604
chr22:
29694723-29694885
163
EWS_HUMAN
473-527
55
1
A:455-458
4
1.14e
ENST00000397938
14e
ENSE00001785831
chr22:
29695224-29695321
98
EWS_HUMAN
527-560
34
0
-
-
1.14f
ENST00000397938
14f
ENSE00001689746
chr22:
29695589-29695841
253
EWS_HUMAN
560-644
85
0
-
-
1.15d
ENST00000397938
15d
ENSE00001530851
chr22:
29696112-29696515
404
EWS_HUMAN
644-656
13
0
-
-
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SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d2cpea1 (A:353-453)
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Protein Domains
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Organisms
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Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Ferredoxin-like
(1795)
Superfamily
:
RNA-binding domain, RBD
(289)
Family
:
Canonical RBD
(214)
Protein domain
:
RNA-binding protein EWS
(1)
Human (Homo sapiens) [TaxId: 9606]
(1)
1a
d2cpea1
A:353-453
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Chain A
Asymmetric Unit 1
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