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2CCV
Asym. Unit
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Asym.Unit (47 KB)
Biol.Unit 1 (241 KB)
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(1)
Title
:
STRUCTURE OF HELIX POMATIA AGGLUTININ WITH ZINC AND N-ACETYL-ALPHA-D-GALACTOSEAMINE (GALNAC)
Authors
:
J. -F. Sanchez, J. Lescar, V. Chazalet, A. Audfray, C. Gautier, J. Gagnon, C. Breton, A. Imberty, E. P. Mitchell
Date
:
18 Jan 06 (Deposition) - 15 May 06 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.30
Chains
:
Asym. Unit : A
Biol. Unit 1: A (6x)
Keywords
:
Lectin, Snail, Helix Pomatia
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
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)
Reference
:
J. -F. Sanchez, J. Lescar, V. Chazalet, A. Audfray, J. Gagnon, R. Alvarez, C. Breton, A. Imberty, E. P. Mitchell
Biochemical And Structural Analysis Of Helix Pomatia Agglutinin. A Hexameric Lectin With A Novel Fold.
J. Biol. Chem. V. 281 20171 2006
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Hetero Components
(5, 5)
Info
All Hetero Components
1a: N-ACETYL-2-DEOXY-2-AMINO-GALACTOSE (A2Ga)
2a: ACETATE ION (ACTa)
3a: GLYCEROL (GOLa)
4a: N-ACETYL-D-GLUCOSAMINE (NAGa)
5a: ZINC ION (ZNa)
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No.
Name
Count
Type
Full Name
1
A2G
1
Ligand/Ion
N-ACETYL-2-DEOXY-2-AMINO-GALACTOSE
2
ACT
1
Ligand/Ion
ACETATE ION
3
GOL
1
Ligand/Ion
GLYCEROL
4
NAG
1
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
5
ZN
1
Ligand/Ion
ZINC ION
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Sites
(5, 5)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
GLY A:24 , ARG A:25 , ASP A:26 , ASP A:55 , ASN A:61 , ARG A:63 , TRP A:83 , HIS A:84 , TYR A:89 , GOL A:1102 , ACT A:1103 , HOH A:2098
BINDING SITE FOR RESIDUE A2G A1101
2
AC2
SOFTWARE
ASN A:34 , SER A:70
BINDING SITE FOR RESIDUE NAG A1104
3
AC3
SOFTWARE
HIS A:84 , ACT A:1103
BINDING SITE FOR RESIDUE ZN A1100
4
AC4
SOFTWARE
ARG A:63 , HIS A:84 , ZN A:1100 , A2G A:1101 , GOL A:1102 , HOH A:2069 , HOH A:2093 , HOH A:2099
BINDING SITE FOR RESIDUE ACT A1103
5
AC5
SOFTWARE
ASP A:26 , GLN A:58 , GLN A:60 , ASN A:61 , ARG A:63 , HIS A:84 , ASN A:85 , A2G A:1101 , ACT A:1103
BINDING SITE FOR RESIDUE GOL A1102
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SAPs(SNPs)/Variants
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Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 1)
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All SCOP Domains
1a: SCOP_d2ccva1 (A:1-99)
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Class
:
All beta proteins
(24004)
Fold
:
HPA-like
(4)
Superfamily
:
Agglutinin HPA-like
(4)
Family
:
Agglutinin HPA-like
(4)
Protein domain
:
Agglutinin HPA
(2)
Roman snail (Helix pomatia) [TaxId: 6536]
(2)
1a
d2ccva1
A:1-99
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CATH Domains
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Pfam Domains
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Chain A
Asymmetric Unit 1
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