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2C8N
Asym. Unit
Info
Asym.Unit (487 KB)
Biol.Unit 1 (88 KB)
Biol.Unit 2 (88 KB)
Biol.Unit 3 (87 KB)
Biol.Unit 4 (86 KB)
Biol.Unit 5 (86 KB)
Biol.Unit 6 (87 KB)
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(1)
Title
:
THE STRUCTURE OF A FAMILY 51 ARABINOFURANOSIDASE, ARAF51, FROM CLOSTRIDIUM THERMOCELLUM IN COMPLEX WITH 1,3-LINKED ARABINOSIDE OF XYLOBIOSE.
Authors
:
E. J. Taylor, N. L. Smith, J. P. Turkenburg, S. D'Souza, H. J. Gilbert, G. J. Davies
Date
:
06 Dec 05 (Deposition) - 14 Dec 05 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.90
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: D (1x)
Biol. Unit 5: E (1x)
Biol. Unit 6: F (1x)
Keywords
:
Arabinofuranosidase, Glycosidase, Mechanism, Xylan, Arabinan, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
E. J. Taylor, N. L. Smith, J. P. Turkenburg, S. D'Souza, H. J. Gilbert, G. J. Davies
Structural Insight Into The Ligand Specificity Of A Thermostable Family 51 Arabinofuranosidase, Araf51, From Clostridium Thermocellum.
Biochem. J. V. 395 31 2006
[
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Hetero Components
(3, 21)
Info
All Hetero Components
1a: ALPHA-L-ARABINOFURANOSE (AHRa)
1b: ALPHA-L-ARABINOFURANOSE (AHRb)
1c: ALPHA-L-ARABINOFURANOSE (AHRc)
1d: ALPHA-L-ARABINOFURANOSE (AHRd)
1e: ALPHA-L-ARABINOFURANOSE (AHRe)
1f: ALPHA-L-ARABINOFURANOSE (AHRf)
2a: 1,2-ETHANEDIOL (EDOa)
2b: 1,2-ETHANEDIOL (EDOb)
2c: 1,2-ETHANEDIOL (EDOc)
2d: 1,2-ETHANEDIOL (EDOd)
2e: 1,2-ETHANEDIOL (EDOe)
2f: 1,2-ETHANEDIOL (EDOf)
2g: 1,2-ETHANEDIOL (EDOg)
2h: 1,2-ETHANEDIOL (EDOh)
2i: 1,2-ETHANEDIOL (EDOi)
3a: XYLOPYRANOSE (XYSa)
3b: XYLOPYRANOSE (XYSb)
3c: XYLOPYRANOSE (XYSc)
3d: XYLOPYRANOSE (XYSd)
3e: XYLOPYRANOSE (XYSe)
3f: XYLOPYRANOSE (XYSf)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
AHR
6
Ligand/Ion
ALPHA-L-ARABINOFURANOSE
2
EDO
9
Ligand/Ion
1,2-ETHANEDIOL
3
XYS
6
Ligand/Ion
XYLOPYRANOSE
[
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Sites
(21, 21)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
PHE A:25 , GLU A:27 , GLY A:71 , ASN A:72 , TRP A:97 , ASN A:172 , TYR A:244 , GLU A:292 , TRP A:296 , GLN A:352 , XYS A:999
BINDING SITE FOR RESIDUE AHR A 998
02
AC2
SOFTWARE
ASN A:72 , SER A:214 , AHR A:998
BINDING SITE FOR RESIDUE XYS A 999
03
AC3
SOFTWARE
GLU B:27 , GLY B:71 , ASN B:72 , ASN B:172 , TYR B:244 , GLU B:292 , LEU B:319 , GLN B:352 , XYS B:999
BINDING SITE FOR RESIDUE AHR B 998
04
AC4
SOFTWARE
ASN B:72 , TRP B:296 , AHR B:998
BINDING SITE FOR RESIDUE XYS B 999
05
AC5
SOFTWARE
GLU C:27 , ASN C:72 , TRP C:97 , ASN C:172 , TYR C:244 , GLU C:292 , TRP C:296 , GLN C:352 , XYS C:999
BINDING SITE FOR RESIDUE AHR C 998
06
AC6
SOFTWARE
ASN C:72 , TRP C:296 , AHR C:998
BINDING SITE FOR RESIDUE XYS C 999
07
AC7
SOFTWARE
GLU D:27 , GLY D:71 , ASN D:72 , TRP D:97 , ASN D:172 , TYR D:244 , GLU D:292 , TRP D:296 , GLN D:352 , XYS D:999
BINDING SITE FOR RESIDUE AHR D 998
08
AC8
SOFTWARE
ASN D:72 , TRP D:296 , AHR D:998
BINDING SITE FOR RESIDUE XYS D 999
09
AC9
SOFTWARE
GLU E:27 , GLY E:71 , ASN E:72 , TRP E:97 , ASN E:172 , TYR E:244 , GLU E:292 , TRP E:296 , GLN E:352 , XYS E:999
BINDING SITE FOR RESIDUE AHR E 998
10
BC1
SOFTWARE
ASN E:72 , TRP E:178 , TRP E:296 , AHR E:998
BINDING SITE FOR RESIDUE XYS E 999
11
BC2
SOFTWARE
GLU F:27 , GLY F:71 , ASN F:72 , TRP F:97 , ASN F:172 , TYR F:244 , GLU F:292 , TRP F:296 , GLN F:352 , XYS F:999
BINDING SITE FOR RESIDUE AHR F 998
12
BC3
SOFTWARE
ASN F:72 , TRP F:178 , SER F:214 , TRP F:296 , AHR F:998
BINDING SITE FOR RESIDUE XYS F 999
13
BC4
SOFTWARE
GLN A:223 , TYR A:275 , TYR D:275
BINDING SITE FOR RESIDUE EDO A1503
14
BC5
SOFTWARE
ASP A:81 , LYS F:149
BINDING SITE FOR RESIDUE EDO A1504
15
BC6
SOFTWARE
LYS A:149 , ARG B:92
BINDING SITE FOR RESIDUE EDO B1503
16
BC7
SOFTWARE
GLN B:223 , TYR B:275 , GLN C:223 , TYR C:275
BINDING SITE FOR RESIDUE EDO C1503
17
BC8
SOFTWARE
ASP C:81 , ARG C:92 , LYS E:149
BINDING SITE FOR RESIDUE EDO C1504
18
BC9
SOFTWARE
LYS C:149 , ASP D:81 , ARG D:92
BINDING SITE FOR RESIDUE EDO D1503
19
CC1
SOFTWARE
TYR E:275 , TYR F:275
BINDING SITE FOR RESIDUE EDO E1503
20
CC2
SOFTWARE
LYS D:149 , ASP E:81 , ARG E:92 , HOH E:2040
BINDING SITE FOR RESIDUE EDO E1504
21
CC3
SOFTWARE
LYS B:149 , PHE F:78 , ASP F:81 , ARG F:92
BINDING SITE FOR RESIDUE EDO F1503
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 12)
Info
All SCOP Domains
1a: SCOP_d2c8na1 (A:2-16,A:387-502)
1b: SCOP_d2c8nb1 (B:3-16,B:387-502)
1c: SCOP_d2c8nc1 (C:4-16,C:387-502)
1d: SCOP_d2c8nd1 (D:4-16,D:387-502)
1e: SCOP_d2c8ne1 (E:3-16,E:387-502)
1f: SCOP_d2c8nf1 (F:3-16,F:387-502)
2a: SCOP_d2c8na2 (A:17-386)
2b: SCOP_d2c8nb2 (B:17-386)
2c: SCOP_d2c8nc2 (C:17-386)
2d: SCOP_d2c8nd2 (D:17-386)
2e: SCOP_d2c8ne2 (E:17-386)
2f: SCOP_d2c8nf2 (F:17-386)
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Classes
(
)
(
)
Folds
(
)
(
)
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(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Glycosyl hydrolase domain
(397)
Superfamily
:
Glycosyl hydrolase domain
(397)
Family
:
Composite domain of glycosyl hydrolase families 5, 30, 39 and 51
(30)
Protein domain
:
Alpha-l-arabinofuranosidase
(6)
Clostridium thermocellum [TaxId: 1515]
(2)
1a
d2c8na1
A:2-16,A:387-502
1b
d2c8nb1
B:3-16,B:387-502
1c
d2c8nc1
C:4-16,C:387-502
1d
d2c8nd1
D:4-16,D:387-502
1e
d2c8ne1
E:3-16,E:387-502
1f
d2c8nf1
F:3-16,F:387-502
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
TIM beta/alpha-barrel
(3956)
Superfamily
:
(Trans)glycosidases
(1191)
Family
:
beta-glycanases
(284)
Protein domain
:
Alpha-L-arabinofuranosidase, catalytic domain
(6)
Clostridium thermocellum [TaxId: 1515]
(2)
2a
d2c8na2
A:17-386
2b
d2c8nb2
B:17-386
2c
d2c8nc2
C:17-386
2d
d2c8nd2
D:17-386
2e
d2c8ne2
E:17-386
2f
d2c8nf2
F:17-386
[
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]
CATH Domains
(0, 0)
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Pfam Domains
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Asym.Unit (487 KB)
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