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2C7E
Asym. Unit
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Asym.Unit (1.1 MB)
Biol.Unit 1, α-C (1.1 MB)
Biol.Unit 1 (1.1 MB)
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(1)
Title
:
REVISED ATOMIC STRUCTURE FITTING INTO A GROEL(D398A)-ATP7 CRYO-EM MAP (EMD 1047)
Authors
:
N. A. Ranson, G. W. Farr, A. M. Roseman, B. Gowen, W. A. Fenton, A. L. Horwich, H. R. Saibil
Date
:
22 Nov 05 (Deposition) - 16 Feb 06 (Release) - 21 Apr 10 (Revision)
Method
:
ELECTRON MICROSCOPY
Resolution
:
9.70
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L,M,N
Biol. Unit 1: A,B,C,D,E,F,G,H,I,J,K,L,M,N (1x)
Keywords
:
Cell Cycle, Atp-Binding, Chaperone, Chaperonin, D398A, Hp60 Class, Cell Division, Nucleotide-Binding, Phosphorylation
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
N. A. Ranson, G. W. Farr, A. M. Roseman, B. Gowen, W. A. Fenton, A. L. Horwich, H. R. Saibil
Atp-Bound States Of Groel Captured By Cryo- Electron Microscopy
Cell(Cambridge, Mass. ) V. 107 869 2001
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Hetero Components
(3, 21)
Info
All Hetero Components
1a: ADENOSINE-5'-TRIPHOSPHATE (ATPa)
1b: ADENOSINE-5'-TRIPHOSPHATE (ATPb)
1c: ADENOSINE-5'-TRIPHOSPHATE (ATPc)
1d: ADENOSINE-5'-TRIPHOSPHATE (ATPd)
1e: ADENOSINE-5'-TRIPHOSPHATE (ATPe)
1f: ADENOSINE-5'-TRIPHOSPHATE (ATPf)
1g: ADENOSINE-5'-TRIPHOSPHATE (ATPg)
2a: POTASSIUM ION (Ka)
2b: POTASSIUM ION (Kb)
2c: POTASSIUM ION (Kc)
2d: POTASSIUM ION (Kd)
2e: POTASSIUM ION (Ke)
2f: POTASSIUM ION (Kf)
2g: POTASSIUM ION (Kg)
3a: MAGNESIUM ION (MGa)
3b: MAGNESIUM ION (MGb)
3c: MAGNESIUM ION (MGc)
3d: MAGNESIUM ION (MGd)
3e: MAGNESIUM ION (MGe)
3f: MAGNESIUM ION (MGf)
3g: MAGNESIUM ION (MGg)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ATP
7
Ligand/Ion
ADENOSINE-5'-TRIPHOSPHATE
2
K
7
Ligand/Ion
POTASSIUM ION
3
MG
7
Ligand/Ion
MAGNESIUM ION
[
close Hetero Component info
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Sites
(21, 21)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
THR A:30 , LYS A:51 , ATP A:551 , HOH A:2001 , HOH A:2002 , HOH A:2003 , HOH A:2004
BINDING SITE FOR RESIDUE K A 549
02
AC2
SOFTWARE
ASP A:87 , ATP A:551 , HOH A:2005 , HOH A:2006
BINDING SITE FOR RESIDUE MG A 550
03
AC3
SOFTWARE
HOH A:2007 , HOH A:2008 , HOH A:2009 , HOH A:2010 , THR B:30 , LYS B:51 , ATP B:551
BINDING SITE FOR RESIDUE K B 549
04
AC4
SOFTWARE
HOH A:2011 , HOH A:2012 , ASP B:87 , ATP B:551
BINDING SITE FOR RESIDUE MG B 550
05
AC5
SOFTWARE
HOH A:2013 , HOH A:2014 , HOH A:2015 , HOH A:2016 , THR C:30 , LYS C:51 , ATP C:551
BINDING SITE FOR RESIDUE K C 549
06
AC6
SOFTWARE
HOH A:2017 , HOH A:2018 , ASP C:87 , ATP C:551
BINDING SITE FOR RESIDUE MG C 550
07
AC7
SOFTWARE
HOH A:2019 , HOH A:2020 , HOH A:2021 , HOH A:2022 , THR D:30 , LYS D:51 , ATP D:551
BINDING SITE FOR RESIDUE K D 549
08
AC8
SOFTWARE
HOH A:2023 , HOH A:2024 , ASP D:87 , ATP D:551
BINDING SITE FOR RESIDUE MG D 550
09
AC9
SOFTWARE
HOH A:2025 , HOH A:2026 , HOH A:2027 , HOH A:2028 , THR E:30 , LYS E:51 , ATP E:551
BINDING SITE FOR RESIDUE K E 549
10
BC1
SOFTWARE
HOH A:2029 , HOH A:2030 , ASP E:87 , ATP E:551
BINDING SITE FOR RESIDUE MG E 550
11
BC2
SOFTWARE
HOH A:2031 , HOH A:2032 , HOH A:2033 , HOH A:2034 , THR F:30 , LYS F:51 , ATP F:551
BINDING SITE FOR RESIDUE K F 549
12
BC3
SOFTWARE
HOH A:2035 , HOH A:2036 , ASP F:87 , ATP F:551
BINDING SITE FOR RESIDUE MG F 550
13
BC4
SOFTWARE
HOH A:2037 , HOH A:2038 , HOH A:2039 , HOH A:2040 , THR G:30 , LYS G:51 , ATP G:551
BINDING SITE FOR RESIDUE K G 549
14
BC5
SOFTWARE
HOH A:2041 , HOH A:2042 , ASP G:87 , ATP G:551
BINDING SITE FOR RESIDUE MG G 550
15
BC6
SOFTWARE
THR A:30 , LEU A:31 , GLY A:32 , PRO A:33 , GLY A:53 , ASP A:87 , GLY A:88 , THR A:89 , THR A:90 , THR A:91 , GLY A:414 , GLY A:415 , TYR A:478 , ASN A:479 , ALA A:480 , ALA A:481 , ILE A:493 , ASP A:495 , K A:549 , MG A:550 , HOH A:2001 , HOH A:2004 , HOH A:2006
BINDING SITE FOR RESIDUE ATP A 551
16
BC7
SOFTWARE
HOH A:2007 , HOH A:2010 , HOH A:2012 , THR B:30 , LEU B:31 , GLY B:32 , PRO B:33 , GLY B:53 , ASP B:87 , GLY B:88 , THR B:89 , THR B:90 , THR B:91 , GLY B:414 , GLY B:415 , TYR B:478 , ASN B:479 , ALA B:480 , ALA B:481 , ILE B:493 , ASP B:495 , K B:549 , MG B:550
BINDING SITE FOR RESIDUE ATP B 551
17
BC8
SOFTWARE
HOH A:2013 , HOH A:2016 , HOH A:2018 , THR C:30 , LEU C:31 , GLY C:32 , PRO C:33 , GLY C:53 , ASP C:87 , GLY C:88 , THR C:89 , THR C:90 , THR C:91 , GLY C:414 , GLY C:415 , TYR C:478 , ASN C:479 , ALA C:480 , ALA C:481 , ILE C:493 , ASP C:495 , K C:549 , MG C:550
BINDING SITE FOR RESIDUE ATP C 551
18
BC9
SOFTWARE
HOH A:2019 , HOH A:2022 , HOH A:2024 , THR D:30 , LEU D:31 , GLY D:32 , PRO D:33 , GLY D:53 , ASP D:87 , GLY D:88 , THR D:89 , THR D:90 , THR D:91 , GLY D:414 , GLY D:415 , TYR D:478 , ASN D:479 , ALA D:480 , ALA D:481 , ILE D:493 , ASP D:495 , K D:549 , MG D:550
BINDING SITE FOR RESIDUE ATP D 551
19
CC1
SOFTWARE
HOH A:2025 , HOH A:2028 , HOH A:2030 , THR E:30 , LEU E:31 , GLY E:32 , PRO E:33 , GLY E:53 , ASP E:87 , GLY E:88 , THR E:89 , THR E:90 , THR E:91 , GLY E:414 , GLY E:415 , TYR E:478 , ASN E:479 , ALA E:480 , ALA E:481 , ILE E:493 , ASP E:495 , K E:549 , MG E:550
BINDING SITE FOR RESIDUE ATP E 551
20
CC2
SOFTWARE
HOH A:2031 , HOH A:2034 , HOH A:2036 , THR F:30 , LEU F:31 , GLY F:32 , PRO F:33 , GLY F:53 , ASP F:87 , GLY F:88 , THR F:89 , THR F:90 , THR F:91 , GLY F:414 , GLY F:415 , TYR F:478 , ASN F:479 , ALA F:480 , ALA F:481 , ILE F:493 , ASP F:495 , K F:549 , MG F:550
BINDING SITE FOR RESIDUE ATP F 551
21
CC3
SOFTWARE
HOH A:2037 , HOH A:2040 , HOH A:2042 , THR G:30 , LEU G:31 , GLY G:32 , PRO G:33 , GLY G:53 , ASP G:87 , GLY G:88 , THR G:89 , THR G:90 , THR G:91 , GLY G:414 , GLY G:415 , TYR G:478 , ASN G:479 , ALA G:480 , ALA G:481 , ILE G:493 , ASP G:495 , K G:549 , MG G:550
BINDING SITE FOR RESIDUE ATP G 551
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
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PROSITE Patterns/Profiles
(1, 14)
Info
All PROSITE Patterns/Profiles
1: CHAPERONINS_CPN60 (A:405-416,B:405-416,C:405-416,D:40...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
CHAPERONINS_CPN60
PS00296
Chaperonins cpn60 signature.
CH60_SHIFL
405-416
14
A:405-416
B:405-416
C:405-416
D:405-416
E:405-416
F:405-416
G:405-416
H:405-416
I:405-416
J:405-416
K:405-416
L:405-416
M:405-416
N:405-416
CH60_ECOL6
405-416
14
A:405-416
B:405-416
C:405-416
D:405-416
E:405-416
F:405-416
G:405-416
H:405-416
I:405-416
J:405-416
K:405-416
L:405-416
M:405-416
N:405-416
CH60_ECOLI
405-416
14
A:405-416
B:405-416
C:405-416
D:405-416
E:405-416
F:405-416
G:405-416
H:405-416
I:405-416
J:405-416
K:405-416
L:405-416
M:405-416
N:405-416
CH60_ECO57
405-416
14
A:405-416
B:405-416
C:405-416
D:405-416
E:405-416
F:405-416
G:405-416
H:405-416
I:405-416
J:405-416
K:405-416
L:405-416
M:405-416
N:405-416
[
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]
Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 14)
Info
All SCOP Domains
1a: SCOP_d2c7ea_ (A:)
1b: SCOP_d2c7eb_ (B:)
1c: SCOP_d2c7ek_ (K:)
1d: SCOP_d2c7el_ (L:)
1e: SCOP_d2c7em_ (M:)
1f: SCOP_d2c7en_ (N:)
1g: SCOP_d2c7ec_ (C:)
1h: SCOP_d2c7ed_ (D:)
1i: SCOP_d2c7ee_ (E:)
1j: SCOP_d2c7ef_ (F:)
1k: SCOP_d2c7eg_ (G:)
1l: SCOP_d2c7eh_ (H:)
1m: SCOP_d2c7ei_ (I:)
1n: SCOP_d2c7ej_ (J:)
View:
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Classes
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)
(
)
Folds
(
)
(
)
Superfamilies
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)
(
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(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Low resolution protein structures
(283)
Fold
:
GroE chaperon
(3)
Superfamily
:
GroE chaperon
(3)
Family
:
GroE chaperon
(3)
Protein domain
:
GroE chaperon
(3)
Escherichia coli [TaxId: 562]
(3)
1a
d2c7ea_
A:
1b
d2c7eb_
B:
1c
d2c7ek_
K:
1d
d2c7el_
L:
1e
d2c7em_
M:
1f
d2c7en_
N:
1g
d2c7ec_
C:
1h
d2c7ed_
D:
1i
d2c7ee_
E:
1j
d2c7ef_
F:
1k
d2c7eg_
G:
1l
d2c7eh_
H:
1m
d2c7ei_
I:
1n
d2c7ej_
J:
[
close SCOP info
]
CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
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Sorry, no Info available
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Chain K
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select residue range 5 to 10 in all chains
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