PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
No precomputed SNP/Variant structure found.
Calculating the structure may take several minutes.
PLEASE WAIT...
Getting 'PROSITE' information from database.
PLEASE WAIT...
Getting 'Exon' information from database.
2C46
Asym. Unit
Info
Asym.Unit (141 KB)
Biol.Unit 1 (134 KB)
Biol.Unit 2 (37 KB)
Biol.Unit 3 (38 KB)
Biol.Unit 4 (35 KB)
Biol.Unit 5 (33 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
(1)
Title
:
CRYSTAL STRUCTURE OF THE HUMAN RNA GUANYLYLTRANSFERASE AND 5'-PHOSPHATASE
Authors
:
J. Debreczeni, C. Johansson, E. Longman, O. Gileadi, P. Savitskysmee, G. Bunkoczi, E. Ugochukwu, F. Von Delft, M. Sundstrom, J. Weigelt, C. Arrowsmith, A. Edwards, S. Knapp
Date
:
15 Oct 05 (Deposition) - 01 Nov 05 (Release) - 05 Dec 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.60
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D (1x)
Biol. Unit 2: A (1x)
Biol. Unit 3: B (1x)
Biol. Unit 4: C (1x)
Biol. Unit 5: D (1x)
Keywords
:
Phosphatase, Transferase, Hydrolase, Mrna Processing, Multifunctional Enzyme, Nucleotidyltransferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. Debreczeni, C. Johansson, E. Longman, O. Gileadi, P. Savitskysmee C. Smee, G. Bunkoczi, E. Ugochukwu, F. Von Delft, M. Sundstrom, J. Weigelt, C. Arrowsmith, A. Edwards, S. Knapp
Crystal Structure Of The Human Rna Guanylyltransferase And 5'-Phosphatase
To Be Published
[
close entry info
]
Hetero Components
(0, 0)
Info
All Hetero Components
View:
Select:
Label:
Sorry, no Info available
[
close Hetero component info
]
Sites
(0, 0)
Info
All Sites
View:
Select:
Label:
Sorry, no Info available
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(2, 8)
Info
All PROSITE Patterns/Profiles
1: TYR_PHOSPHATASE_2 (A:104-171,B:104-171,C:104-171,D:10...)
2: TYR_PHOSPHATASE_1 (A:124-134,B:124-134,C:124-134,D:12...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
TYR_PHOSPHATASE_2
PS50056
Tyrosine specific protein phosphatases family profile.
MCE1_HUMAN
104-171
4
A:104-171
B:104-171
C:104-171
D:104-171
2
TYR_PHOSPHATASE_1
PS00383
Tyrosine specific protein phosphatases active site.
MCE1_HUMAN
124-134
4
A:124-134
B:124-134
C:124-134
D:124-134
[
close PROSITE info
]
Exons
(6, 24)
Info
All Exons
Exon 1.1b (A:1-22 | B:-2-22 | C:-2-22 | D:4-2...)
Exon 1.2 (A:22-58 | B:22-58 | C:22-58 | D:22...)
Exon 1.3 (A:59-93 | B:59-93 | C:59-93 | D:59...)
Exon 1.4 (A:93-123 (gaps) | B:93-123 (gaps) ...)
Exon 1.5 (A:123-148 | B:123-148 | C:123-148 ...)
Exon 1.6 (A:148-199 | B:148-199 | C:148-199 ...)
View:
Select:
Label:
All Exon Boundaries
1: Boundary -/1.1b
2: Boundary 1.1b/1.2
3: Boundary 1.2/1.3
4: Boundary 1.3/1.4
5: Boundary 1.4/1.5
6: Boundary 1.5/1.6
7: Boundary 1.6/1.7
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1b
ENST00000369485
1b
ENSE00001829011
chr6:
89673315-89673065
251
MCE1_HUMAN
1-22
22
4
A:1-22
B:-2-22
C:-2-22
D:4-22
22
22
22
19
1.2
ENST00000369485
2
ENSE00000760359
chr6:
89650899-89650790
110
MCE1_HUMAN
22-58
37
4
A:22-58
B:22-58
C:22-58
D:22-56
37
37
37
35
1.3
ENST00000369485
3
ENSE00000760358
chr6:
89638986-89638883
104
MCE1_HUMAN
59-93
35
4
A:59-93
B:59-93
C:59-93
D:59-93
35
35
35
35
1.4
ENST00000369485
4
ENSE00000798181
chr6:
89638792-89638704
89
MCE1_HUMAN
93-123
31
4
A:93-123 (gaps)
B:93-123 (gaps)
C:93-123 (gaps)
D:93-123 (gaps)
31
31
31
31
1.5
ENST00000369485
5
ENSE00000918695
chr6:
89616159-89616084
76
MCE1_HUMAN
123-148
26
4
A:123-148
B:123-148
C:123-148
D:123-148
26
26
26
26
1.6
ENST00000369485
6
ENSE00000798180
chr6:
89614674-89614434
241
MCE1_HUMAN
148-228
81
4
A:148-199
B:148-199
C:148-199
D:148-200
52
52
52
53
1.7
ENST00000369485
7
ENSE00000918694
chr6:
89601634-89601525
110
MCE1_HUMAN
229-265
37
0
-
-
1.8
ENST00000369485
8
ENSE00000918693
chr6:
89600315-89600214
102
MCE1_HUMAN
265-299
35
0
-
-
1.9
ENST00000369485
9
ENSE00000760356
chr6:
89563483-89563348
136
MCE1_HUMAN
299-344
46
0
-
-
1.10
ENST00000369485
10
ENSE00000760355
chr6:
89559545-89559474
72
MCE1_HUMAN
345-368
24
0
-
-
1.11
ENST00000369485
11
ENSE00000760354
chr6:
89554240-89554076
165
MCE1_HUMAN
369-423
55
0
-
-
1.12
ENST00000369485
12
ENSE00000760353
chr6:
89511351-89511283
69
MCE1_HUMAN
424-446
23
0
-
-
1.13
ENST00000369485
13
ENSE00000760352
chr6:
89479593-89479493
101
MCE1_HUMAN
447-480
34
0
-
-
1.14a
ENST00000369485
14a
ENSE00000760351
chr6:
89388138-89388072
67
MCE1_HUMAN
480-502
23
0
-
-
1.15
ENST00000369485
15
ENSE00000760350
chr6:
89324114-89323991
124
MCE1_HUMAN
503-544
42
0
-
-
1.16b
ENST00000369485
16b
ENSE00001823083
chr6:
89322601-89319985
2617
MCE1_HUMAN
544-597
54
0
-
-
[
close EXON info
]
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d2c46a_ (A:)
1b: SCOP_d2c46b_ (B:)
1c: SCOP_d2c46c_ (C:)
1d: SCOP_d2c46d_ (D:)
View:
Select:
Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
(Phosphotyrosine protein) phosphatases II
(296)
Superfamily
:
(Phosphotyrosine protein) phosphatases II
(296)
Family
:
Dual specificity phosphatase-like
(27)
Protein domain
:
automated matches
(8)
Human (Homo sapiens) [TaxId: 9606]
(6)
1a
d2c46a_
A:
1b
d2c46b_
B:
1c
d2c46c_
C:
1d
d2c46d_
D:
[
close SCOP info
]
CATH Domains
(1, 4)
Info
all CATH domains
1a: CATH_2c46B00 (B:-6-199)
1b: CATH_2c46A00 (A:-5-199)
1c: CATH_2c46C00 (C:-6-199)
1d: CATH_2c46D00 (D:4-200)
View:
Select:
Label:
Classes
(
)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Alpha-Beta Complex
(3881)
Topology
:
Protein-Tyrosine Phosphatase; Chain A
(262)
Homologous Superfamily
:
Protein tyrosine phosphatase superfamily
(228)
Human (Homo sapiens)
(196)
1a
2c46B00
B:-6-199
1b
2c46A00
A:-5-199
1c
2c46C00
C:-6-199
1d
2c46D00
D:4-200
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Chain B
Chain C
Chain D
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (141 KB)
Header - Asym.Unit
Biol.Unit 1 (134 KB)
Header - Biol.Unit 1
Biol.Unit 2 (37 KB)
Header - Biol.Unit 2
Biol.Unit 3 (38 KB)
Header - Biol.Unit 3
Biol.Unit 4 (35 KB)
Header - Biol.Unit 4
Biol.Unit 5 (33 KB)
Header - Biol.Unit 5
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
2C46
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help