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2C39
Biol. Unit 4
Info
Asym.Unit (915 KB)
Biol.Unit 1 (235 KB)
Biol.Unit 2 (234 KB)
Biol.Unit 3 (237 KB)
Biol.Unit 4 (233 KB)
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(1)
Title
:
RNASE PH CORE OF THE ARCHAEAL EXOSOME IN COMPLEX WITH ADP
Authors
:
E. Lorentzen, E. Conti
Date
:
05 Oct 05 (Deposition) - 23 Nov 05 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.30
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X
Biol. Unit 1: A,B,C,D,E,F (1x)
Biol. Unit 2: G,H,I,J,K,L (1x)
Biol. Unit 3: M,N,O,P,Q,R (1x)
Biol. Unit 4: S,T,U,V,W,X (1x)
Keywords
:
Exosome, Rnase Ph, Rrp41, Rrp42, Phosphorolytic, Exoribonuclease, Rna Degradation, Archaeal, Hydrolase, Exonuclease, Nuclease
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
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)
Reference
:
E. Lorentzen, E. Conti
Structural Basis Of 3' End Rna Recognition And Exoribonucleolytic Cleavage By An Exosome Rnase Ph Core.
Mol. Cell V. 20 473 2005
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Hetero Components
(1, 3)
Info
All Hetero Components
1a: ADENOSINE-5'-DIPHOSPHATE (ADPa)
1b: ADENOSINE-5'-DIPHOSPHATE (ADPb)
1c: ADENOSINE-5'-DIPHOSPHATE (ADPc)
1d: ADENOSINE-5'-DIPHOSPHATE (ADPd)
1e: ADENOSINE-5'-DIPHOSPHATE (ADPe)
1f: ADENOSINE-5'-DIPHOSPHATE (ADPf)
1g: ADENOSINE-5'-DIPHOSPHATE (ADPg)
1h: ADENOSINE-5'-DIPHOSPHATE (ADPh)
1i: ADENOSINE-5'-DIPHOSPHATE (ADPi)
1j: ADENOSINE-5'-DIPHOSPHATE (ADPj)
1k: ADENOSINE-5'-DIPHOSPHATE (ADPk)
1l: ADENOSINE-5'-DIPHOSPHATE (ADPl)
View:
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Label:
No.
Name
Count
Type
Full Name
1
ADP
3
Ligand/Ion
ADENOSINE-5'-DIPHOSPHATE
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Sites
(4, 4)
Info
All Sites
1: AC9 (SOFTWARE)
2: BC1 (SOFTWARE)
3: BC2 (SOFTWARE)
4: BC3 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC9
SOFTWARE
THR R:88 , ARG R:99 , ALA R:134 , ALA R:136 , GLY R:137 , SER R:138 , ARG R:139 , ASP R:182 , ASP R:188 , MET T:1 , ARG T:2
BINDING SITE FOR RESIDUE ADP R 404
2
BC1
SOFTWARE
MET R:1 , ARG R:2 , THR T:88 , ARG T:99 , LEU T:103 , ALA T:134 , ASP T:135 , ALA T:136 , GLY T:137 , SER T:138 , ARG T:139 , GLU T:179 , ASP T:182 , ASP T:188
BINDING SITE FOR RESIDUE ADP T 404
3
BC2
SOFTWARE
ARG V:99 , ALA V:134 , ALA V:136 , GLY V:137 , SER V:138 , ARG V:139 , GLU V:179 , ASP V:182
BINDING SITE FOR RESIDUE ADP V 404
4
BC3
SOFTWARE
THR X:88 , ARG X:99 , ALA X:136 , GLY X:137 , SER X:138 , ARG X:139 , ASP X:182 , ASP X:188
BINDING SITE FOR RESIDUE ADP X 404
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(4, 46)
Info
All SCOP Domains
1a: SCOP_d2c39b2 (B:156-248)
1b: SCOP_d2c39d2 (D:156-248)
1c: SCOP_d2c39f2 (F:156-248)
1d: SCOP_d2c39j2 (J:156-248)
1e: SCOP_d2c39l2 (L:156-248)
1f: SCOP_d2c39n2 (N:156-248)
1g: SCOP_d2c39p2 (P:156-248)
1h: SCOP_d2c39r2 (R:156-248)
1i: SCOP_d2c39t2 (T:156-248)
1j: SCOP_d2c39v2 (V:156-247)
1k: SCOP_d2c39x2 (X:156-248)
2a: SCOP_d2c39a2 (A:192-275)
2b: SCOP_d2c39k2 (K:192-275)
2c: SCOP_d2c39m2 (M:192-275)
2d: SCOP_d2c39o2 (O:192-275)
2e: SCOP_d2c39q2 (Q:192-275)
2f: SCOP_d2c39s2 (S:192-274)
2g: SCOP_d2c39u2 (U:192-274)
2h: SCOP_d2c39w2 (W:192-275)
2i: SCOP_d2c39c2 (C:192-275)
2j: SCOP_d2c39e2 (E:192-275)
2k: SCOP_d2c39g2 (G:192-275)
2l: SCOP_d2c39i2 (I:192-275)
3a: SCOP_d2c39b1 (B:8-155)
3b: SCOP_d2c39d1 (D:8-155)
3c: SCOP_d2c39f1 (F:8-155)
3d: SCOP_d2c39j1 (J:8-155)
3e: SCOP_d2c39l1 (L:8-155)
3f: SCOP_d2c39n1 (N:10-155)
3g: SCOP_d2c39p1 (P:8-155)
3h: SCOP_d2c39r1 (R:8-155)
3i: SCOP_d2c39t1 (T:8-155)
3j: SCOP_d2c39v1 (V:9-155)
3k: SCOP_d2c39x1 (X:8-155)
4a: SCOP_d2c39a1 (A:1-191)
4b: SCOP_d2c39k1 (K:1-191)
4c: SCOP_d2c39m1 (M:1-191)
4d: SCOP_d2c39o1 (O:1-191)
4e: SCOP_d2c39q1 (Q:1-191)
4f: SCOP_d2c39s1 (S:1-191)
4g: SCOP_d2c39u1 (U:1-191)
4h: SCOP_d2c39w1 (W:1-191)
4i: SCOP_d2c39c1 (C:1-191)
4j: SCOP_d2c39e1 (E:1-191)
4k: SCOP_d2c39g1 (G:1-191)
4l: SCOP_d2c39i1 (I:1-191)
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Protein Domains
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Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Ribonuclease PH domain 2-like
(52)
Superfamily
:
Ribonuclease PH domain 2-like
(52)
Family
:
Ribonuclease PH domain 2-like
(41)
Protein domain
:
Exosome complex exonuclease 1, ECX1
(11)
Sulfolobus solfataricus [TaxId: 2287]
(9)
1a
d2c39b2
B:156-248
1b
d2c39d2
D:156-248
1c
d2c39f2
F:156-248
1d
d2c39j2
J:156-248
1e
d2c39l2
L:156-248
1f
d2c39n2
N:156-248
1g
d2c39p2
P:156-248
1h
d2c39r2
R:156-248
1i
d2c39t2
T:156-248
1j
d2c39v2
V:156-247
1k
d2c39x2
X:156-248
Protein domain
:
Exosome complex exonuclease 2, ECX2
(10)
Sulfolobus solfataricus [TaxId: 2287]
(6)
2a
d2c39a2
A:192-275
2b
d2c39k2
K:192-275
2c
d2c39m2
M:192-275
2d
d2c39o2
O:192-275
2e
d2c39q2
Q:192-275
2f
d2c39s2
S:192-274
2g
d2c39u2
U:192-274
2h
d2c39w2
W:192-275
2i
d2c39c2
C:192-275
2j
d2c39e2
E:192-275
2k
d2c39g2
G:192-275
2l
d2c39i2
I:192-275
Fold
:
Ribosomal protein S5 domain 2-like
(306)
Superfamily
:
Ribosomal protein S5 domain 2-like
(306)
Family
:
Ribonuclease PH domain 1-like
(45)
Protein domain
:
Exosome complex exonuclease 1, ECX1
(11)
Sulfolobus solfataricus [TaxId: 2287]
(9)
3a
d2c39b1
B:8-155
3b
d2c39d1
D:8-155
3c
d2c39f1
F:8-155
3d
d2c39j1
J:8-155
3e
d2c39l1
L:8-155
3f
d2c39n1
N:10-155
3g
d2c39p1
P:8-155
3h
d2c39r1
R:8-155
3i
d2c39t1
T:8-155
3j
d2c39v1
V:9-155
3k
d2c39x1
X:8-155
Protein domain
:
Exosome complex exonuclease 2,ECX2
(10)
Sulfolobus solfataricus [TaxId: 2287]
(6)
4a
d2c39a1
A:1-191
4b
d2c39k1
K:1-191
4c
d2c39m1
M:1-191
4d
d2c39o1
O:1-191
4e
d2c39q1
Q:1-191
4f
d2c39s1
S:1-191
4g
d2c39u1
U:1-191
4h
d2c39w1
W:1-191
4i
d2c39c1
C:1-191
4j
d2c39e1
E:1-191
4k
d2c39g1
G:1-191
4l
d2c39i1
I:1-191
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CATH Domains
(0, 0)
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Pfam Domains
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Asymmetric Unit 1
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