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2C37
Biol. Unit 1
Info
Asym.Unit (929 KB)
Biol.Unit 1 (238 KB)
Biol.Unit 2 (238 KB)
Biol.Unit 3 (239 KB)
Biol.Unit 4 (239 KB)
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(1)
Title
:
RNASE PH CORE OF THE ARCHAEAL EXOSOME IN COMPLEX WITH U8 RNA
Authors
:
E. Lorentzen, E. Conti
Date
:
04 Oct 05 (Deposition) - 23 Nov 05 (Release) - 20 Apr 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.80
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X
Biol. Unit 1: A,B,C,D,E,F (1x)
Biol. Unit 2: G,H,I,J,K,L (1x)
Biol. Unit 3: M,N,O,P,Q,R (1x)
Biol. Unit 4: S,T,U,V,W,X (1x)
Keywords
:
Exosome, Rrp41, Rrp42, Exoribonuclease, Rna Degradation, Archaeal, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
E. Lorentzen, E. Conti
Structural Basis Of 3' End Rna Recognition And Exoribonucleolytic Cleavage By An Exosome Rnase Ph Core.
Mol. Cell V. 20 473 2005
[
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Hetero Components
(1, 8)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
1b: CHLORIDE ION (CLb)
1c: CHLORIDE ION (CLc)
1d: CHLORIDE ION (CLd)
1e: CHLORIDE ION (CLe)
1f: CHLORIDE ION (CLf)
1g: CHLORIDE ION (CLg)
1h: CHLORIDE ION (CLh)
1i: CHLORIDE ION (CLi)
1j: CHLORIDE ION (CLj)
1k: CHLORIDE ION (CLk)
1l: CHLORIDE ION (CLl)
2a: SODIUM ION (NAa)
3a: 5-O-PHOSPHONO-BETA-D-RIBOFURANOSE (RP5a)
4a: URIDINE-5'-MONOPHOSPHATE (U5Pa)
4b: URIDINE-5'-MONOPHOSPHATE (U5Pb)
4c: URIDINE-5'-MONOPHOSPHATE (U5Pc)
4d: URIDINE-5'-MONOPHOSPHATE (U5Pd)
4e: URIDINE-5'-MONOPHOSPHATE (U5Pe)
4f: URIDINE-5'-MONOPHOSPHATE (U5Pf)
4g: URIDINE-5'-MONOPHOSPHATE (U5Pg)
4h: URIDINE-5'-MONOPHOSPHATE (U5Ph)
4i: URIDINE-5'-MONOPHOSPHATE (U5Pi)
4j: URIDINE-5'-MONOPHOSPHATE (U5Pj)
4k: URIDINE-5'-MONOPHOSPHATE (U5Pk)
4l: URIDINE-5'-MONOPHOSPHATE (U5Pl)
4m: URIDINE-5'-MONOPHOSPHATE (U5Pm)
4n: URIDINE-5'-MONOPHOSPHATE (U5Pn)
4o: URIDINE-5'-MONOPHOSPHATE (U5Po)
4p: URIDINE-5'-MONOPHOSPHATE (U5Pp)
4q: URIDINE-5'-MONOPHOSPHATE (U5Pq)
4r: URIDINE-5'-MONOPHOSPHATE (U5Pr)
4s: URIDINE-5'-MONOPHOSPHATE (U5Ps)
4t: URIDINE-5'-MONOPHOSPHATE (U5Pt)
4u: URIDINE-5'-MONOPHOSPHATE (U5Pu)
4v: URIDINE-5'-MONOPHOSPHATE (U5Pv)
4w: URIDINE-5'-MONOPHOSPHATE (U5Pw)
4x: URIDINE-5'-MONOPHOSPHATE (U5Px)
4y: URIDINE-5'-MONOPHOSPHATE (U5Py)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CL
-1
Ligand/Ion
CHLORIDE ION
2
NA
-1
Ligand/Ion
SODIUM ION
3
RP5
-1
Ligand/Ion
5-O-PHOSPHONO-BETA-D-RIBOFURANOSE
4
U5P
8
Ligand/Ion
URIDINE-5'-MONOPHOSPHATE
[
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]
Sites
(5, 5)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: BC6 (SOFTWARE)
5: BC7 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
GLY B:137 , SER B:138 , ARG B:139
BINDING SITE FOR RESIDUE CL B 301
2
AC2
SOFTWARE
ARG D:99 , SER D:138
BINDING SITE FOR RESIDUE CL D 301
3
AC3
SOFTWARE
GLY F:137 , SER F:138 , ARG F:139
BINDING SITE FOR RESIDUE CL F 301
4
BC6
SOFTWARE
TYR A:75 , LEU A:84 , ARG A:112 , ASP A:115 , ARG B:98 , ARG B:99 , ASP B:182
BINDING SITE FOR CHAIN B OF RESIDUES 401 TO 404
5
BC7
SOFTWARE
TYR E:75 , LEU E:84 , ARG E:112 , ARG E:119 , THR F:88 , ARG F:98 , ARG F:99 , ALA F:134 , ALA F:136 , GLU F:179 , ASP F:182 , MET F:183
BINDING SITE FOR CHAIN F OF RESIDUES 401 TO 404
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(, 0)
Info
All PROSITE Patterns/Profiles
;
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End label:
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(4, 48)
Info
All SCOP Domains
1a: SCOP_d2c37a2 (A:192-275)
1b: SCOP_d2c37c2 (C:192-275)
1c: SCOP_d2c37e2 (E:192-275)
1d: SCOP_d2c37g2 (G:192-275)
1e: SCOP_d2c37i2 (I:192-275)
1f: SCOP_d2c37k2 (K:192-275)
1g: SCOP_d2c37m2 (M:192-275)
1h: SCOP_d2c37o2 (O:192-275)
1i: SCOP_d2c37q2 (Q:192-275)
1j: SCOP_d2c37s2 (S:192-275)
1k: SCOP_d2c37u2 (U:192-275)
1l: SCOP_d2c37w2 (W:192-275)
2a: SCOP_d2c37b2 (B:156-248)
2b: SCOP_d2c37d2 (D:156-248)
2c: SCOP_d2c37f2 (F:156-248)
2d: SCOP_d2c37h2 (H:156-248)
2e: SCOP_d2c37j2 (J:156-248)
2f: SCOP_d2c37l2 (L:156-248)
2g: SCOP_d2c37n2 (N:156-248)
2h: SCOP_d2c37p2 (P:156-248)
2i: SCOP_d2c37r2 (R:156-248)
2j: SCOP_d2c37t2 (T:156-248)
2k: SCOP_d2c37v2 (V:156-248)
2l: SCOP_d2c37x2 (X:156-248)
3a: SCOP_d2c37a1 (A:1-191)
3b: SCOP_d2c37c1 (C:1-191)
3c: SCOP_d2c37e1 (E:1-191)
3d: SCOP_d2c37g1 (G:1-191)
3e: SCOP_d2c37i1 (I:1-191)
3f: SCOP_d2c37k1 (K:1-191)
3g: SCOP_d2c37m1 (M:1-191)
3h: SCOP_d2c37o1 (O:1-191)
3i: SCOP_d2c37q1 (Q:1-191)
3j: SCOP_d2c37s1 (S:1-191)
3k: SCOP_d2c37u1 (U:1-191)
3l: SCOP_d2c37w1 (W:1-191)
4a: SCOP_d2c37b1 (B:8-155)
4b: SCOP_d2c37d1 (D:2-155)
4c: SCOP_d2c37f1 (F:8-155)
4d: SCOP_d2c37h1 (H:8-155)
4e: SCOP_d2c37j1 (J:8-155)
4f: SCOP_d2c37l1 (L:2-155)
4g: SCOP_d2c37n1 (N:8-155)
4h: SCOP_d2c37p1 (P:1-155)
4i: SCOP_d2c37r1 (R:4-155)
4j: SCOP_d2c37t1 (T:2-155)
4k: SCOP_d2c37v1 (V:5-155)
4l: SCOP_d2c37x1 (X:8-155)
View:
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Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Ribonuclease PH domain 2-like
(52)
Superfamily
:
Ribonuclease PH domain 2-like
(52)
Family
:
automated matches
(11)
Protein domain
:
automated matches
(11)
Sulfolobus solfataricus [TaxId: 2287]
(4)
1a
d2c37a2
A:192-275
1b
d2c37c2
C:192-275
1c
d2c37e2
E:192-275
1d
d2c37g2
G:192-275
1e
d2c37i2
I:192-275
1f
d2c37k2
K:192-275
1g
d2c37m2
M:192-275
1h
d2c37o2
O:192-275
1i
d2c37q2
Q:192-275
1j
d2c37s2
S:192-275
1k
d2c37u2
U:192-275
1l
d2c37w2
W:192-275
Family
:
Ribonuclease PH domain 2-like
(41)
Protein domain
:
Exosome complex exonuclease 1, ECX1
(11)
Sulfolobus solfataricus [TaxId: 2287]
(9)
2a
d2c37b2
B:156-248
2b
d2c37d2
D:156-248
2c
d2c37f2
F:156-248
2d
d2c37h2
H:156-248
2e
d2c37j2
J:156-248
2f
d2c37l2
L:156-248
2g
d2c37n2
N:156-248
2h
d2c37p2
P:156-248
2i
d2c37r2
R:156-248
2j
d2c37t2
T:156-248
2k
d2c37v2
V:156-248
2l
d2c37x2
X:156-248
Fold
:
Ribosomal protein S5 domain 2-like
(306)
Superfamily
:
Ribosomal protein S5 domain 2-like
(306)
Family
:
Ribonuclease PH domain 1-like
(45)
Protein domain
:
automated matches
(6)
Sulfolobus solfataricus [TaxId: 2287]
(4)
3a
d2c37a1
A:1-191
3b
d2c37c1
C:1-191
3c
d2c37e1
E:1-191
3d
d2c37g1
G:1-191
3e
d2c37i1
I:1-191
3f
d2c37k1
K:1-191
3g
d2c37m1
M:1-191
3h
d2c37o1
O:1-191
3i
d2c37q1
Q:1-191
3j
d2c37s1
S:1-191
3k
d2c37u1
U:1-191
3l
d2c37w1
W:1-191
Protein domain
:
Exosome complex exonuclease 1, ECX1
(11)
Sulfolobus solfataricus [TaxId: 2287]
(9)
4a
d2c37b1
B:8-155
4b
d2c37d1
D:2-155
4c
d2c37f1
F:8-155
4d
d2c37h1
H:8-155
4e
d2c37j1
J:8-155
4f
d2c37l1
L:2-155
4g
d2c37n1
N:8-155
4h
d2c37p1
P:1-155
4i
d2c37r1
R:4-155
4j
d2c37t1
T:2-155
4k
d2c37v1
V:5-155
4l
d2c37x1
X:8-155
[
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]
CATH Domains
(0, 0)
Info
all CATH domains
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Pfam Domains
(0, 0)
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Sorry, no Info available
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Asym.Unit (929 KB)
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Header - Biol.Unit 1
Biol.Unit 2 (238 KB)
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Biol.Unit 3 (239 KB)
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