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2C35
Asym. Unit
Info
Asym.Unit (193 KB)
Biol.Unit 1 (50 KB)
Biol.Unit 2 (49 KB)
Biol.Unit 3 (50 KB)
Biol.Unit 4 (50 KB)
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(1)
Title
:
SUBUNITS RPB4 AND RPB7 OF HUMAN RNA POLYMERASE II
Authors
:
H. Meka, F. Werner, S. C. Cordell, S. Onesti, P. Brick
Date
:
04 Oct 05 (Deposition) - 18 Nov 05 (Release) - 27 Mar 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.70
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Biol. Unit 3: E,F (1x)
Biol. Unit 4: G,H (1x)
Keywords
:
Transcription, Rna Polymerase Ii, Polymerase, Nucleotidyltransferase
(Keyword Search:
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Reference
:
H. Meka, F. Werner, S. C. Cordell, S. Onesti, P. Brick
Crystal Structure And Rna Binding Of The Rpb4/Rpb7 Subunits Of Human Rna Polymerase Ii.
Nucleic Acids Res. V. 33 6435 2005
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Hetero Components
(0, 0)
Info
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Sites
(0, 0)
Info
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
Info
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;
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Exons
(12, 48)
Info
All Exons
Exon 1.1a (A:14-25 | C:14-25 | E:14-25 | G:14...)
Exon 1.3 (A:25-85 | C:25-85 | E:25-85 | G:25...)
Exon 1.4 (A:85-117 | C:85-117 | E:85-117 | G...)
Exon 1.5e (A:117-142 | C:117-142 | E:117-139 ...)
Exon 2.1a (B:1-4 | D:1-4 | F:1-4 | H:1-4)
Exon 2.1g (B:5-41 | D:5-41 | F:5-41 | H:5-41)
Exon 2.1m (B:41-94 | D:41-94 | F:41-94 | H:41...)
Exon 2.2 (B:95-111 | D:95-111 | F:95-111 | H...)
Exon 2.3b (B:112-133 | D:112-133 | F:112-133 ...)
Exon 2.4 (B:134-157 | D:134-157 | F:134-157 ...)
Exon 2.5 (B:158-169 | D:158-169 | F:158-169 ...)
Exon 2.6d (B:169-171 | D:169-171 | F:169-171 ...)
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All Exon Boundaries
01: Boundary -/1.1a
02: Boundary 1.1a/1.3
03: Boundary 1.3/1.4
04: Boundary 1.4/1.5e
05: Boundary 1.5e/-
06: Boundary -/2.1a
07: Boundary 2.1a/2.1g
08: Boundary 2.1g/2.1m
09: Boundary 2.1m/2.2
10: Boundary 2.2/2.3b
11: Boundary 2.3b/2.4
12: Boundary 2.4/2.5
13: Boundary 2.5/2.6d
14: Boundary 2.6d/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000272645
1a
ENSE00001907079
chr2:
128615731-128615602
130
RPB4_HUMAN
1-25
25
4
A:14-25
C:14-25
E:14-25
G:14-25
12
12
12
12
1.3
ENST00000272645
3
ENSE00001594013
chr2:
128610679-128610499
181
RPB4_HUMAN
25-85
61
4
A:25-85
C:25-85
E:25-85
G:25-85
61
61
61
61
1.4
ENST00000272645
4
ENSE00001137843
chr2:
128608259-128608164
96
RPB4_HUMAN
85-117
33
4
A:85-117
C:85-117
E:85-117
G:85-117
33
33
33
33
1.5e
ENST00000272645
5e
ENSE00001337644
chr2:
128605759-128603896
1864
RPB4_HUMAN
117-142
26
4
A:117-142
C:117-142
E:117-139
G:117-139
26
26
23
23
2.1a
ENST00000301788
1a
ENSE00001381367
chr11:
62529016-62529132
117
RPB7_HUMAN
1-4
4
4
B:1-4
D:1-4
F:1-4
H:1-4
4
4
4
4
2.1g
ENST00000301788
1g
ENSE00001119240
chr11:
62529267-62529376
110
RPB7_HUMAN
5-41
37
4
B:5-41
D:5-41
F:5-41
H:5-41
37
37
37
37
2.1m
ENST00000301788
1m
ENSE00001119237
chr11:
62530339-62530498
160
RPB7_HUMAN
41-94
54
4
B:41-94
D:41-94
F:41-94
H:41-94
54
54
54
54
2.2
ENST00000301788
2
ENSE00001119236
chr11:
62532654-62532704
51
RPB7_HUMAN
95-111
17
4
B:95-111
D:95-111
F:95-111
H:95-111
17
17
17
17
2.3b
ENST00000301788
3b
ENSE00001119239
chr11:
62532812-62532877
66
RPB7_HUMAN
112-133
22
4
B:112-133
D:112-133
F:112-133
H:112-133
22
22
22
22
2.4
ENST00000301788
4
ENSE00001119243
chr11:
62533125-62533196
72
RPB7_HUMAN
134-157
24
4
B:134-157
D:134-157
F:134-157
H:134-157
24
24
24
24
2.5
ENST00000301788
5
ENSE00001319561
chr11:
62533715-62533748
34
RPB7_HUMAN
158-169
12
4
B:158-169
D:158-169
F:158-169
H:158-169
12
12
12
12
2.6d
ENST00000301788
6d
ENSE00002175738
chr11:
62533966-62534182
217
RPB7_HUMAN
169-172
4
4
B:169-171
D:169-171
F:169-171
H:169-171
3
3
3
3
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SCOP Domains
(3, 12)
Info
All SCOP Domains
1a: SCOP_d2c35a1 (A:14-142)
1b: SCOP_d2c35c_ (C:)
1c: SCOP_d2c35e_ (E:)
1d: SCOP_d2c35g_ (G:)
2a: SCOP_d2c35b1 (B:78-171)
2b: SCOP_d2c35d1 (D:78-171)
2c: SCOP_d2c35f1 (F:78-171)
2d: SCOP_d2c35h1 (H:78-171)
3a: SCOP_d2c35b2 (B:1-77)
3b: SCOP_d2c35d2 (D:1-77)
3c: SCOP_d2c35f2 (F:1-77)
3d: SCOP_d2c35h2 (H:1-77)
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Protein Domains
(
)
(
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Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
SAM domain-like
(639)
Superfamily
:
HRDC-like
(16)
Family
:
RNA polymerase II subunit RBP4 (RpoF)
(3)
Protein domain
:
RNA polymerase II subunit RBP4 (RpoF)
(3)
Human (Homo sapiens) [TaxId: 9606]
(1)
1a
d2c35a1
A:14-142
1b
d2c35c_
C:
1c
d2c35e_
E:
1d
d2c35g_
G:
Class
:
All beta proteins
(24004)
Fold
:
OB-fold
(1179)
Superfamily
:
Nucleic acid-binding proteins
(590)
Family
:
Cold shock DNA-binding domain-like
(310)
Protein domain
:
C-terminal domain of RNA polymerase II subunit RBP7 (RpoE)
(8)
Human (Homo sapiens) [TaxId: 9606]
(1)
2a
d2c35b1
B:78-171
2b
d2c35d1
D:78-171
2c
d2c35f1
F:78-171
2d
d2c35h1
H:78-171
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Dodecin subunit-like
(56)
Superfamily
:
N-terminal, heterodimerisation domain of RBP7 (RpoE)
(8)
Family
:
N-terminal, heterodimerisation domain of RBP7 (RpoE)
(8)
Protein domain
:
N-terminal, heterodimerisation domain of RBP7 (RpoE)
(8)
Human (Homo sapiens) [TaxId: 9606]
(1)
3a
d2c35b2
B:1-77
3b
d2c35d2
D:1-77
3c
d2c35f2
F:1-77
3d
d2c35h2
H:1-77
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CATH Domains
(2, 8)
Info
all CATH domains
1a: CATH_2c35B01 (B:1-80)
1b: CATH_2c35D01 (D:1-80)
1c: CATH_2c35F01 (F:1-80)
1d: CATH_2c35H01 (H:1-80)
2a: CATH_2c35B02 (B:81-171)
2b: CATH_2c35D02 (D:81-171)
2c: CATH_2c35F02 (F:81-171)
2d: CATH_2c35H02 (H:81-171)
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Organisms
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(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Dna Ligase; domain 1
(375)
Homologous Superfamily
:
DNA-directed RNA polymerase ii subunit; domain 1
(30)
Human (Homo sapiens)
(1)
1a
2c35B01
B:1-80
1b
2c35D01
D:1-80
1c
2c35F01
F:1-80
1d
2c35H01
H:1-80
Class
:
Mainly Beta
(13760)
Architecture
:
Beta Barrel
(4804)
Topology
:
OB fold (Dihydrolipoamide Acetyltransferase, E2P)
(1040)
Homologous Superfamily
:
Nucleic acid-binding proteins
(483)
Human (Homo sapiens)
(27)
2a
2c35B02
B:81-171
2b
2c35D02
D:81-171
2c
2c35F02
F:81-171
2d
2c35H02
H:81-171
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Pfam Domains
(0, 0)
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