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2BZE
Asym. Unit
Info
Asym.Unit (1.0 MB)
Biol.Unit 1 (42 KB)
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Models
(25 )
Title
:
NMR STRUCTURE OF HUMAN RTF1 PLUS3 DOMAIN.
Authors
:
V. Truffault, T. Diercks, E. Ab, R. N. De Jong, M. A. Daniels, R. Kaptein G. E. Folkers, Structural Proteomics In Europe (Spine)
Date
:
16 Aug 05 (Deposition) - 03 Jan 07 (Release) - 24 May 17 (Revision)
Method
:
SOLUTION NMR
Resolution
:
NOT APPLICABLE
Chains
:
Asym. Unit : A (25 x)
Biol. Unit 1: A (1x)
Keywords
:
Human Rtf1 Plus3 Domain, Transcription, Elongation, Paf1 Complex, Histone H3 Methylation, H2B Ubiquitination, Cdc73, Leo1, Ctr9, Plus3 Domain, Transcription Regulation, Structural Proteomics In Europe, Spine, Structural Genomics
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
R. N. De Jong, V. Truffault, T. Diercks, E. Ab, M. A. Daniels, R. Kaptein, G. E. Folkers
Structure And Dna Binding Of The Human Rtf1 Plus3 Domain.
Structure V. 16 149 2008
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Hetero Components
(0, 0)
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Sites
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SAPs(SNPs)/Variants
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PROSITE Patterns/Profiles
(1, 1)
Info
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1: PLUS3 (A:345-476)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PLUS3
PS51360
Plus3 domain profile.
RTF1_HUMAN
353-484
1
A:345-476
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Exons
(6, 6)
Info
All Exons
Exon 1.5 (A:-21--20)
Exon 1.7 (A:-19--9)
Exon 1.9 (A:-8-393)
Exon 1.10b (A:394-421)
Exon 1.11 (A:421-450)
Exon 1.12 (A:451-476)
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1: Boundary 1.4b/1.5
2: Boundary 1.5/1.6
3: Boundary 1.6/1.7
4: Boundary 1.7/1.8
5: Boundary 1.8/1.9
6: Boundary 1.9/1.10b
7: Boundary 1.10b/1.11
8: Boundary 1.11/1.12
9: Boundary 1.12/1.13
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000389629
1a
ENSE00002188164
chr15:
41709302-41709511
210
RTF1_HUMAN
1-66
66
0
-
-
1.2
ENST00000389629
2
ENSE00001685099
chr15:
41730519-41730629
111
RTF1_HUMAN
67-103
37
0
-
-
1.4b
ENST00000389629
4b
ENSE00001644351
chr15:
41745099-41745246
148
RTF1_HUMAN
104-153
50
0
-
-
1.5
ENST00000389629
5
ENSE00000931009
chr15:
41749870-41750074
205
RTF1_HUMAN
153-221
69
1
A:-21--20
2
1.6
ENST00000389629
6
ENSE00001029847
chr15:
41756969-41757083
115
RTF1_HUMAN
221-259
39
0
-
-
1.7
ENST00000389629
7
ENSE00000931011
chr15:
41758339-41758450
112
RTF1_HUMAN
260-297
38
1
A:-19--9
11
1.8
ENST00000389629
8
ENSE00000931012
chr15:
41762455-41762590
136
RTF1_HUMAN
297-342
46
0
-
-
1.9
ENST00000389629
9
ENSE00000931013
chr15:
41763370-41763547
178
RTF1_HUMAN
342-401
60
1
A:-8-393
57
1.10b
ENST00000389629
10b
ENSE00000931014
chr15:
41766818-41766900
83
RTF1_HUMAN
402-429
28
1
A:394-421
28
1.11
ENST00000389629
11
ENSE00001152999
chr15:
41767723-41767810
88
RTF1_HUMAN
429-458
30
1
A:421-450
30
1.12
ENST00000389629
12
ENSE00001152995
chr15:
41767910-41768017
108
RTF1_HUMAN
459-494
36
1
A:451-476
26
1.13
ENST00000389629
13
ENSE00001152991
chr15:
41768644-41768721
78
RTF1_HUMAN
495-520
26
0
-
-
1.14b
ENST00000389629
14b
ENSE00001152986
chr15:
41769363-41769484
122
RTF1_HUMAN
521-561
41
0
-
-
1.15
ENST00000389629
15
ENSE00001152980
chr15:
41769656-41769713
58
RTF1_HUMAN
561-580
20
0
-
-
1.16
ENST00000389629
16
ENSE00000931020
chr15:
41770746-41770823
78
RTF1_HUMAN
581-606
26
0
-
-
1.17
ENST00000389629
17
ENSE00001506418
chr15:
41771301-41771396
96
RTF1_HUMAN
607-638
32
0
-
-
1.18
ENST00000389629
18
ENSE00000931022
chr15:
41772412-41772523
112
RTF1_HUMAN
639-676
38
0
-
-
1.19b
ENST00000389629
19b
ENSE00001944328
chr15:
41772779-41775761
2983
RTF1_HUMAN
676-710
35
0
-
-
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SCOP Domains
(1, 1)
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All SCOP Domains
1a: SCOP_d2bzea1 (A:345-476)
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Class
:
All beta proteins
(24004)
Fold
:
SH3-like barrel
(1035)
Superfamily
:
Plus3-like
(4)
Family
:
Plus3
(4)
Protein domain
:
RNA polymerase-associated protein RTF1 homolog
(3)
Human (Homo sapiens) [TaxId: 9606]
(3)
1a
d2bzea1
A:345-476
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Chain A
Asymmetric Unit 1
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