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2BTV
Biol. Unit 1
Info
Asym.Unit (1008 KB)
Biol.Unit 1, α-C (57.6 MB)
Biol.Unit 1 (57.6 MB)
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(1)
Title
:
ATOMIC MODEL FOR BLUETONGUE VIRUS (BTV) CORE
Authors
:
J. M. Grimes, J. N. Burroughs, P. Gouet, J. M. Diprose, R. Malby, S. Zientras, P. P. C. Mertens, D. I. Stuart
Date
:
05 Sep 98 (Deposition) - 30 Sep 98 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.50
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,P,Q,R,S,T
Biol. Unit 1: A,B,C,D,E,F,G,H,I,J,P,Q,R,S,T (60x)
Keywords
:
Virus/Viral Protein, Icosahedral Virus
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
]
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Reference
:
J. M. Grimes, J. N. Burroughs, P. Gouet, J. M. Diprose, R. Malby, S. Zientara, P. P. Mertens, D. I. Stuart
The Atomic Structure Of The Bluetongue Virus Core.
Nature V. 395 470 1998
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
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Sites
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SAPs(SNPs)/Variants
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PROSITE Patterns/Profiles
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Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
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SCOP Domains
(3, 28)
Info
All SCOP Domains
1a: SCOP_d2btvc1 (C:1-120,C:255-349)
1b: SCOP_d2btvg1 (G:1-120,G:255-349)
1c: SCOP_d2btvh1 (H:1-120,H:255-349)
1d: SCOP_d2btvi1 (I:1-120,I:255-349)
1e: SCOP_d2btvj1 (J:1-120,J:255-349)
1f: SCOP_d2btvp1 (P:1-120,P:255-349)
1g: SCOP_d2btvq1 (Q:1-120,Q:255-349)
1h: SCOP_d2btvr1 (R:1-120,R:255-349)
1i: SCOP_d2btvs1 (S:1-120,S:255-349)
1j: SCOP_d2btvt1 (T:1-120,T:255-349)
1k: SCOP_d2btvd1 (D:1-120,D:255-349)
1l: SCOP_d2btve1 (E:1-120,E:255-349)
1m: SCOP_d2btvf1 (F:1-120,F:255-349)
2a: SCOP_d2btvc2 (C:121-254)
2b: SCOP_d2btvg2 (G:121-254)
2c: SCOP_d2btvh2 (H:121-254)
2d: SCOP_d2btvi2 (I:121-254)
2e: SCOP_d2btvj2 (J:121-254)
2f: SCOP_d2btvp2 (P:121-254)
2g: SCOP_d2btvq2 (Q:121-254)
2h: SCOP_d2btvr2 (R:121-254)
2i: SCOP_d2btvs2 (S:121-254)
2j: SCOP_d2btvt2 (T:121-254)
2k: SCOP_d2btvd2 (D:121-254)
2l: SCOP_d2btve2 (E:121-254)
2m: SCOP_d2btvf2 (F:121-254)
3a: SCOP_d2btva_ (A:)
3b: SCOP_d2btvb_ (B:)
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
A virus capsid protein alpha-helical domain
(4)
Superfamily
:
A virus capsid protein alpha-helical domain
(4)
Family
:
Orbivirus capsid
(2)
Protein domain
:
BTV vp7
(2)
Bluetongue virus [TaxId: 40051]
(2)
1a
d2btvc1
C:1-120,C:255-349
1b
d2btvg1
G:1-120,G:255-349
1c
d2btvh1
H:1-120,H:255-349
1d
d2btvi1
I:1-120,I:255-349
1e
d2btvj1
J:1-120,J:255-349
1f
d2btvp1
P:1-120,P:255-349
1g
d2btvq1
Q:1-120,Q:255-349
1h
d2btvr1
R:1-120,R:255-349
1i
d2btvs1
S:1-120,S:255-349
1j
d2btvt1
T:1-120,T:255-349
1k
d2btvd1
D:1-120,D:255-349
1l
d2btve1
E:1-120,E:255-349
1m
d2btvf1
F:1-120,F:255-349
Class
:
All beta proteins
(24004)
Fold
:
Viral protein domain
(195)
Superfamily
:
Viral protein domain
(195)
Family
:
Top domain of virus capsid protein
(5)
Protein domain
:
BTV vp7, central (top) domain
(2)
Bluetongue virus [TaxId: 40051]
(2)
2a
d2btvc2
C:121-254
2b
d2btvg2
G:121-254
2c
d2btvh2
H:121-254
2d
d2btvi2
I:121-254
2e
d2btvj2
J:121-254
2f
d2btvp2
P:121-254
2g
d2btvq2
Q:121-254
2h
d2btvr2
R:121-254
2i
d2btvs2
S:121-254
2j
d2btvt2
T:121-254
2k
d2btvd2
D:121-254
2l
d2btve2
E:121-254
2m
d2btvf2
F:121-254
Class
:
Multi-domain proteins (alpha and beta)
(2421)
Fold
:
Reovirus inner layer core protein p3
(2)
Superfamily
:
Reovirus inner layer core protein p3
(2)
Family
:
Orbivirus core
(1)
Protein domain
:
BTV vp3
(1)
Bluetongue virus, strain 1 [TaxId: 40051]
(1)
3a
d2btva_
A:
3b
d2btvb_
B:
[
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CATH Domains
(3, 39)
Info
all CATH domains
1a: CATH_2btvC01 (C:1-120)
1b: CATH_2btvD01 (D:1-120)
1c: CATH_2btvR01 (R:1-120)
1d: CATH_2btvS01 (S:1-120)
1e: CATH_2btvT01 (T:1-120)
1f: CATH_2btvE01 (E:1-120)
1g: CATH_2btvF01 (F:1-120)
1h: CATH_2btvG01 (G:1-120)
1i: CATH_2btvH01 (H:1-120)
1j: CATH_2btvI01 (I:1-120)
1k: CATH_2btvJ01 (J:1-120)
1l: CATH_2btvP01 (P:1-120)
1m: CATH_2btvQ01 (Q:1-120)
2a: CATH_2btvC03 (C:254-349)
2b: CATH_2btvD03 (D:254-349)
2c: CATH_2btvR03 (R:254-349)
2d: CATH_2btvS03 (S:254-349)
2e: CATH_2btvT03 (T:254-349)
2f: CATH_2btvE03 (E:254-349)
2g: CATH_2btvF03 (F:254-349)
2h: CATH_2btvG03 (G:254-349)
2i: CATH_2btvH03 (H:254-349)
2j: CATH_2btvI03 (I:254-349)
2k: CATH_2btvJ03 (J:254-349)
2l: CATH_2btvP03 (P:254-349)
2m: CATH_2btvQ03 (Q:254-349)
3a: CATH_2btvC02 (C:121-253)
3b: CATH_2btvD02 (D:121-253)
3c: CATH_2btvR02 (R:121-253)
3d: CATH_2btvS02 (S:121-253)
3e: CATH_2btvT02 (T:121-253)
3f: CATH_2btvE02 (E:121-253)
3g: CATH_2btvF02 (F:121-253)
3h: CATH_2btvG02 (G:121-253)
3i: CATH_2btvH02 (H:121-253)
3j: CATH_2btvI02 (I:121-253)
3k: CATH_2btvJ02 (J:121-253)
3l: CATH_2btvP02 (P:121-253)
3m: CATH_2btvQ02 (Q:121-253)
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(
)
Organisms
(
)
(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Bluetongue Virus 10, subunit 1; domain 1
(2)
Homologous Superfamily
:
Bluetongue Virus 10, subunit 1, domain 1
(2)
Bluetongue virus (serotype 1 / isolate south africa). Organism_taxid:10905. Strain: sterotype 1 (south africa).
(1)
1a
2btvC01
C:1-120
1b
2btvD01
D:1-120
1c
2btvR01
R:1-120
1d
2btvS01
S:1-120
1e
2btvT01
T:1-120
1f
2btvE01
E:1-120
1g
2btvF01
F:1-120
1h
2btvG01
G:1-120
1i
2btvH01
H:1-120
1j
2btvI01
I:1-120
1k
2btvJ01
J:1-120
1l
2btvP01
P:1-120
1m
2btvQ01
Q:1-120
Topology
:
Bluetongue Virus 10, subunit 1; domain 3
(2)
Homologous Superfamily
:
Bluetongue Virus 10, subunit 1, domain 3
(2)
Bluetongue virus (serotype 1 / isolate south africa). Organism_taxid:10905. Strain: sterotype 1 (south africa).
(1)
2a
2btvC03
C:254-349
2b
2btvD03
D:254-349
2c
2btvR03
R:254-349
2d
2btvS03
S:254-349
2e
2btvT03
T:254-349
2f
2btvE03
E:254-349
2g
2btvF03
F:254-349
2h
2btvG03
G:254-349
2i
2btvH03
H:254-349
2j
2btvI03
I:254-349
2k
2btvJ03
J:254-349
2l
2btvP03
P:254-349
2m
2btvQ03
Q:254-349
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Jelly Rolls
(1293)
Homologous Superfamily
:
[code=2.60.120.170, no name defined]
(7)
Bluetongue virus (serotype 1 / isolate south africa). Organism_taxid:10905. Strain: sterotype 1 (south africa).
(1)
3a
2btvC02
C:121-253
3b
2btvD02
D:121-253
3c
2btvR02
R:121-253
3d
2btvS02
S:121-253
3e
2btvT02
T:121-253
3f
2btvE02
E:121-253
3g
2btvF02
F:121-253
3h
2btvG02
G:121-253
3i
2btvH02
H:121-253
3j
2btvI02
I:121-253
3k
2btvJ02
J:121-253
3l
2btvP02
P:121-253
3m
2btvQ02
Q:121-253
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Pfam Domains
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