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2BR2
Biol. Unit 4
Info
Asym.Unit (922 KB)
Biol.Unit 1 (236 KB)
Biol.Unit 2 (237 KB)
Biol.Unit 3 (239 KB)
Biol.Unit 4 (237 KB)
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(1)
Title
:
RNASE PH CORE OF THE ARCHAEAL EXOSOME
Authors
:
E. Lorentzen, S. Fribourg, E. Conti
Date
:
30 Apr 05 (Deposition) - 06 Jun 05 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.80
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X
Biol. Unit 1: A,B,C,D,E,F (1x)
Biol. Unit 2: G,H,I,J,K,L (1x)
Biol. Unit 3: M,N,O,P,Q,R (1x)
Biol. Unit 4: S,T,U,V,W,X (1x)
Keywords
:
Exosome, Rnase Ph, Phosphorolytic, Exoribonuclease, Rna Degradation, Archaeal, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
E. Lorentzen, P. Walter, S. Fribourg, E. Evguenieva-Hackenberg, G. Klug, E. Conti
The Archaeal Exosome Core Is A Hexameric Ring Structure With Three Catalytic Subunits.
Nat. Struct. Mol. Biol. V. 12 575 2005
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Hetero Components
(0, 0)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
1b: CHLORIDE ION (CLb)
1c: CHLORIDE ION (CLc)
1d: CHLORIDE ION (CLd)
1e: CHLORIDE ION (CLe)
1f: CHLORIDE ION (CLf)
1g: CHLORIDE ION (CLg)
1h: CHLORIDE ION (CLh)
1i: CHLORIDE ION (CLi)
1j: CHLORIDE ION (CLj)
1k: CHLORIDE ION (CLk)
1l: CHLORIDE ION (CLl)
1m: CHLORIDE ION (CLm)
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Sites
(3, 3)
Info
All Sites
1: BC2 (SOFTWARE)
2: BC3 (SOFTWARE)
3: BC4 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
BC2
SOFTWARE
ARG T:99 , GLY T:137 , SER T:138 , ARG T:139
BINDING SITE FOR RESIDUE CL T1249
2
BC3
SOFTWARE
ARG V:99 , GLY V:137 , SER V:138 , ARG V:139
BINDING SITE FOR RESIDUE CL V1249
3
BC4
SOFTWARE
ARG X:99 , GLY X:137 , SER X:138 , ARG X:139
BINDING SITE FOR RESIDUE CL X1249
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
(, 0)
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(4, 48)
Info
All SCOP Domains
1a: SCOP_d2br2a2 (A:192-275)
1b: SCOP_d2br2c2 (C:192-275)
1c: SCOP_d2br2u2 (U:192-275)
1d: SCOP_d2br2w2 (W:192-275)
1e: SCOP_d2br2e2 (E:192-275)
1f: SCOP_d2br2g2 (G:192-275)
1g: SCOP_d2br2i2 (I:192-275)
1h: SCOP_d2br2k2 (K:192-275)
1i: SCOP_d2br2m2 (M:192-275)
1j: SCOP_d2br2o2 (O:192-275)
1k: SCOP_d2br2q2 (Q:192-275)
1l: SCOP_d2br2s2 (S:192-275)
2a: SCOP_d2br2b2 (B:156-248)
2b: SCOP_d2br2n2 (N:156-248)
2c: SCOP_d2br2p2 (P:156-248)
2d: SCOP_d2br2r2 (R:156-248)
2e: SCOP_d2br2t2 (T:156-248)
2f: SCOP_d2br2v2 (V:156-248)
2g: SCOP_d2br2x2 (X:156-248)
2h: SCOP_d2br2d2 (D:156-248)
2i: SCOP_d2br2f2 (F:156-248)
2j: SCOP_d2br2h2 (H:156-248)
2k: SCOP_d2br2j2 (J:156-248)
2l: SCOP_d2br2l2 (L:156-248)
3a: SCOP_d2br2a1 (A:1-191)
3b: SCOP_d2br2c1 (C:1-191)
3c: SCOP_d2br2u1 (U:1-191)
3d: SCOP_d2br2w1 (W:1-191)
3e: SCOP_d2br2e1 (E:1-191)
3f: SCOP_d2br2g1 (G:1-191)
3g: SCOP_d2br2i1 (I:1-191)
3h: SCOP_d2br2k1 (K:1-191)
3i: SCOP_d2br2m1 (M:1-191)
3j: SCOP_d2br2o1 (O:1-191)
3k: SCOP_d2br2q1 (Q:1-191)
3l: SCOP_d2br2s1 (S:1-191)
4a: SCOP_d2br2b1 (B:8-155)
4b: SCOP_d2br2n1 (N:8-155)
4c: SCOP_d2br2p1 (P:1-155)
4d: SCOP_d2br2r1 (R:4-155)
4e: SCOP_d2br2t1 (T:2-155)
4f: SCOP_d2br2v1 (V:5-155)
4g: SCOP_d2br2x1 (X:8-155)
4h: SCOP_d2br2d1 (D:2-155)
4i: SCOP_d2br2f1 (F:8-155)
4j: SCOP_d2br2h1 (H:8-155)
4k: SCOP_d2br2j1 (J:8-155)
4l: SCOP_d2br2l1 (L:2-155)
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Classes
(
)
(
)
Folds
(
)
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)
Superfamilies
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)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Ribonuclease PH domain 2-like
(52)
Superfamily
:
Ribonuclease PH domain 2-like
(52)
Family
:
automated matches
(11)
Protein domain
:
automated matches
(11)
Sulfolobus solfataricus [TaxId: 2287]
(4)
1a
d2br2a2
A:192-275
1b
d2br2c2
C:192-275
1c
d2br2u2
U:192-275
1d
d2br2w2
W:192-275
1e
d2br2e2
E:192-275
1f
d2br2g2
G:192-275
1g
d2br2i2
I:192-275
1h
d2br2k2
K:192-275
1i
d2br2m2
M:192-275
1j
d2br2o2
O:192-275
1k
d2br2q2
Q:192-275
1l
d2br2s2
S:192-275
Family
:
Ribonuclease PH domain 2-like
(41)
Protein domain
:
Exosome complex exonuclease 1, ECX1
(11)
Sulfolobus solfataricus [TaxId: 2287]
(9)
2a
d2br2b2
B:156-248
2b
d2br2n2
N:156-248
2c
d2br2p2
P:156-248
2d
d2br2r2
R:156-248
2e
d2br2t2
T:156-248
2f
d2br2v2
V:156-248
2g
d2br2x2
X:156-248
2h
d2br2d2
D:156-248
2i
d2br2f2
F:156-248
2j
d2br2h2
H:156-248
2k
d2br2j2
J:156-248
2l
d2br2l2
L:156-248
Fold
:
Ribosomal protein S5 domain 2-like
(306)
Superfamily
:
Ribosomal protein S5 domain 2-like
(306)
Family
:
Ribonuclease PH domain 1-like
(45)
Protein domain
:
automated matches
(6)
Sulfolobus solfataricus [TaxId: 2287]
(4)
3a
d2br2a1
A:1-191
3b
d2br2c1
C:1-191
3c
d2br2u1
U:1-191
3d
d2br2w1
W:1-191
3e
d2br2e1
E:1-191
3f
d2br2g1
G:1-191
3g
d2br2i1
I:1-191
3h
d2br2k1
K:1-191
3i
d2br2m1
M:1-191
3j
d2br2o1
O:1-191
3k
d2br2q1
Q:1-191
3l
d2br2s1
S:1-191
Protein domain
:
Exosome complex exonuclease 1, ECX1
(11)
Sulfolobus solfataricus [TaxId: 2287]
(9)
4a
d2br2b1
B:8-155
4b
d2br2n1
N:8-155
4c
d2br2p1
P:1-155
4d
d2br2r1
R:4-155
4e
d2br2t1
T:2-155
4f
d2br2v1
V:5-155
4g
d2br2x1
X:8-155
4h
d2br2d1
D:2-155
4i
d2br2f1
F:8-155
4j
d2br2h1
H:8-155
4k
d2br2j1
J:8-155
4l
d2br2l1
L:2-155
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CATH Domains
(0, 0)
Info
all CATH domains
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Pfam Domains
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Asym.Unit (922 KB)
Header - Asym.Unit
Biol.Unit 1 (236 KB)
Header - Biol.Unit 1
Biol.Unit 2 (237 KB)
Header - Biol.Unit 2
Biol.Unit 3 (239 KB)
Header - Biol.Unit 3
Biol.Unit 4 (237 KB)
Header - Biol.Unit 4
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