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2BP1
Asym. Unit
Info
Asym.Unit (223 KB)
Biol.Unit 1 (110 KB)
Biol.Unit 2 (110 KB)
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Title
:
STRUCTURE OF THE AFLATOXIN ALDEHYDE REDUCTASE IN COMPLEX WITH NADPH
Authors
:
J. E. Debreczeni, P. Lukacik, K. Kavanagh, E. Dubinina, J. Bray, S. Cole A. Haroniti, A. Edwards, C. Arrowsmith, M. Sundstrom, F. Von Delft, O U. Oppermann
Date
:
17 Apr 05 (Deposition) - 11 May 05 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.40
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Keywords
:
Oxidoreductase, Aldo-Keto Reductase Family 7, Ssa Reductase, Tim Barrel
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. E. Debreczeni, P. Lukacik, K. Kavanagh, E. Dubinina, J. Bray, S. Colebrook, A. Haroniti, A. Edwards, C. Arrowsmith, M. Sundstrom, F. Von Delft, O. Gileadi, U. Oppermann
Structure Of The Aflatoxin Aldehyde Reductase In Complex With Nadph
To Be Published
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Hetero Components
(2, 8)
Info
All Hetero Components
1a: CITRATE ANION (FLCa)
1b: CITRATE ANION (FLCb)
1c: CITRATE ANION (FLCc)
1d: CITRATE ANION (FLCd)
2a: NADPH DIHYDRO-NICOTINAMIDE-ADENINE... (NDPa)
2b: NADPH DIHYDRO-NICOTINAMIDE-ADENINE... (NDPb)
2c: NADPH DIHYDRO-NICOTINAMIDE-ADENINE... (NDPc)
2d: NADPH DIHYDRO-NICOTINAMIDE-ADENINE... (NDPd)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
FLC
4
Ligand/Ion
CITRATE ANION
2
NDP
4
Ligand/Ion
NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
[
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Sites
(8, 8)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
8: AC8 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
MET A:46 , MET A:77 , TYR A:78 , HIS A:142 , TRP A:257 , TYR A:261 , ARG A:264 , ARG A:360 , NDP A:1361
BINDING SITE FOR RESIDUE FLC A1362
2
AC2
SOFTWARE
MET B:46 , MET B:77 , TYR B:78 , HIS B:142 , TRP B:257 , THR B:260 , TYR B:261 , ARG B:264 , ARG B:360 , NDP B:1361
BINDING SITE FOR RESIDUE FLC B1362
3
AC3
SOFTWARE
MET C:46 , MET C:77 , TYR C:78 , HIS C:142 , TRP C:257 , TYR C:261 , ARG C:264 , ARG C:360 , NDP C:1361
BINDING SITE FOR RESIDUE FLC C1362
4
AC4
SOFTWARE
MET D:46 , MET D:77 , TYR D:78 , HIS D:142 , TYR D:261 , ARG D:264 , ARG D:360 , NDP D:1361
BINDING SITE FOR RESIDUE FLC D1362
5
AC5
SOFTWARE
GLY A:44 , THR A:45 , MET A:46 , ARG A:51 , ASP A:73 , TYR A:78 , HIS A:142 , SER A:172 , ASN A:173 , GLN A:198 , TYR A:226 , ASN A:227 , PRO A:228 , LEU A:229 , ALA A:230 , GLY A:231 , GLY A:232 , THR A:235 , LYS A:237 , TYR A:238 , ARG A:251 , TYR A:261 , ILE A:315 , GLY A:317 , MET A:318 , SER A:319 , GLN A:323 , GLN A:326 , ASN A:327 , FLC A:1362 , HOH A:2118 , HOH A:2123 , HOH A:2147 , HOH A:2148 , HOH A:2149 , HOH A:2150
BINDING SITE FOR RESIDUE NDP A1361
6
AC6
SOFTWARE
GLY B:44 , THR B:45 , MET B:46 , ASP B:73 , TYR B:78 , HIS B:142 , SER B:172 , ASN B:173 , GLN B:198 , TYR B:226 , ASN B:227 , PRO B:228 , LEU B:229 , ALA B:230 , GLY B:231 , GLY B:232 , THR B:235 , LYS B:237 , TYR B:238 , ARG B:251 , TYR B:261 , ILE B:315 , GLY B:317 , MET B:318 , SER B:319 , GLN B:323 , GLN B:326 , ASN B:327 , FLC B:1362 , HOH B:2079 , HOH B:2140 , HOH B:2141 , HOH B:2142 , HOH B:2143 , HOH B:2144
BINDING SITE FOR RESIDUE NDP B1361
7
AC7
SOFTWARE
GLY C:44 , THR C:45 , MET C:46 , ASP C:73 , TYR C:78 , SER C:172 , ASN C:173 , GLN C:198 , TYR C:226 , ASN C:227 , PRO C:228 , LEU C:229 , ALA C:230 , GLY C:231 , GLY C:232 , THR C:235 , LYS C:237 , TYR C:238 , GLY C:250 , ARG C:251 , TYR C:261 , ILE C:315 , GLY C:317 , MET C:318 , SER C:319 , GLN C:323 , GLN C:326 , ASN C:327 , ARG C:360 , FLC C:1362 , HOH C:2080 , HOH C:2142 , HOH C:2143 , HOH C:2144 , HOH C:2145
BINDING SITE FOR RESIDUE NDP C1361
8
AC8
SOFTWARE
GLY D:44 , THR D:45 , MET D:46 , ASP D:73 , TYR D:78 , SER D:172 , ASN D:173 , GLN D:198 , TYR D:226 , ASN D:227 , PRO D:228 , LEU D:229 , ALA D:230 , GLY D:231 , GLY D:232 , LYS D:237 , TYR D:238 , GLY D:250 , ARG D:251 , TYR D:261 , ILE D:315 , GLY D:317 , MET D:318 , SER D:319 , GLN D:323 , GLN D:326 , ASN D:327 , ARG D:360 , FLC D:1362 , HOH D:2067 , HOH D:2099 , HOH D:2100 , HOH D:2101
BINDING SITE FOR RESIDUE NDP D1361
[
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]
SAPs(SNPs)/Variants
(7, 28)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_048209 (V136M, chain A/B/C/D, )
2: VAR_017413 (A143T, chain A/B/C/D, )
3: VAR_017414 (Q158H, chain A/B/C/D, )
4: VAR_060222 (E181K, chain A/B/C/D, )
5: VAR_048210 (G199S, chain A/B/C/D, )
6: VAR_017415 (C215Y, chain A/B/C/D, )
7: VAR_048211 (S256N, chain A/B/C/D, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_048209
V
135
M
ARK72_HUMAN
Polymorphism
6670759
A/B/C/D
V
136
M
2
UniProt
VAR_017413
A
142
T
ARK72_HUMAN
Polymorphism
1043657
A/B/C/D
A
143
T
3
UniProt
VAR_017414
Q
157
H
ARK72_HUMAN
Polymorphism
859208
A/B/C/D
Q
158
H
4
UniProt
VAR_060222
E
180
K
ARK72_HUMAN
Polymorphism
859210
A/B/C/D
E
181
K
5
UniProt
VAR_048210
G
198
S
ARK72_HUMAN
Polymorphism
2231200
A/B/C/D
G
199
S
6
UniProt
VAR_017415
C
214
Y
ARK72_HUMAN
Polymorphism
2235794
A/B/C/D
C
215
Y
7
UniProt
VAR_048211
S
255
N
ARK72_HUMAN
Polymorphism
2231203
A/B/C/D
S
256
N
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
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]
PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
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End label:
Sorry, no Info available
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Exons
(7, 28)
Info
All Exons
Exon 1.1a (A:38-101 | B:38-101 (gaps) | C:38-...)
Exon 1.2a (A:101-163 | B:101-163 | C:101-163 ...)
Exon 1.3a (A:164-198 | B:164-198 | C:164-198 ...)
Exon 1.4 (A:199-231 | B:199-231 | C:199-231 ...)
Exon 1.5 (A:231-264 | B:231-264 | C:231-264 ...)
Exon 1.6 (A:264-307 | B:264-307 | C:264-307 ...)
Exon 1.7e (A:308-360 | B:308-360 | C:308-360 ...)
View:
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All Exon Boundaries
1: Boundary -/1.1a
2: Boundary 1.1a/1.2a
3: Boundary 1.2a/1.3a
4: Boundary 1.3a/1.4
5: Boundary 1.4/1.5
6: Boundary 1.5/1.6
7: Boundary 1.6/1.7e
8: Boundary 1.7e/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000235835
1a
ENSE00000872932
chr1:
19638640-19638321
320
ARK72_HUMAN
1-100
100
4
A:38-101
B:38-101 (gaps)
C:38-101 (gaps)
D:38-101
64
64
64
64
1.2a
ENST00000235835
2a
ENSE00001601047
chr1:
19635136-19634949
188
ARK72_HUMAN
100-162
63
4
A:101-163
B:101-163
C:101-163
D:101-163
63
63
63
63
1.3a
ENST00000235835
3a
ENSE00001736745
chr1:
19634756-19634652
105
ARK72_HUMAN
163-197
35
4
A:164-198
B:164-198
C:164-198
D:164-198
35
35
35
35
1.4
ENST00000235835
4
ENSE00001617062
chr1:
19633904-19633808
97
ARK72_HUMAN
198-230
33
4
A:199-231
B:199-231
C:199-231
D:199-231
33
33
33
33
1.5
ENST00000235835
5
ENSE00001647259
chr1:
19633595-19633496
100
ARK72_HUMAN
230-263
34
4
A:231-264
B:231-264
C:231-264
D:231-264
34
34
34
34
1.6
ENST00000235835
6
ENSE00001610778
chr1:
19632641-19632512
130
ARK72_HUMAN
263-306
44
4
A:264-307
B:264-307
C:264-307
D:264-307
44
44
44
44
1.7e
ENST00000235835
7e
ENSE00001188305
chr1:
19630880-19630459
422
ARK72_HUMAN
307-359
53
4
A:308-360
B:308-360
C:308-360
D:308-360
53
53
53
53
[
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]
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d2bp1a_ (A:)
1b: SCOP_d2bp1b_ (B:)
1c: SCOP_d2bp1c_ (C:)
1d: SCOP_d2bp1d_ (D:)
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(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
TIM beta/alpha-barrel
(3956)
Superfamily
:
NAD(P)-linked oxidoreductase
(286)
Family
:
Aldo-keto reductases (NADP)
(251)
Protein domain
:
automated matches
(62)
Human (Homo sapiens) [TaxId: 9606]
(48)
1a
d2bp1a_
A:
1b
d2bp1b_
B:
1c
d2bp1c_
C:
1d
d2bp1d_
D:
[
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CATH Domains
(1, 4)
Info
all CATH domains
1a: CATH_2bp1B00 (B:38-360)
1b: CATH_2bp1C00 (C:38-360)
1c: CATH_2bp1A00 (A:38-360)
1d: CATH_2bp1D00 (D:38-360)
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(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Alpha-Beta Barrel
(2994)
Topology
:
TIM Barrel
(2806)
Homologous Superfamily
:
NADP-dependent oxidoreductase
(181)
Human (Homo sapiens)
(116)
1a
2bp1B00
B:38-360
1b
2bp1C00
C:38-360
1c
2bp1A00
A:38-360
1d
2bp1D00
D:38-360
[
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
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Chain D
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