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2BKM
Asym. Unit
Info
Asym.Unit (57 KB)
Biol.Unit 1 (27 KB)
Biol.Unit 2 (27 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE TRUNCATED HEMOGLOBIN FROM GEOBACILLUS STEAROTHERMOPHILUS
Authors
:
A. Ilari, P. Kjelgaard, C. Von Wachenfeldt, A. Boffi, E. Chiancone
Date
:
08 Feb 06 (Deposition) - 29 Nov 06 (Release) - 12 Jul 17 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.50
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Hypothetical Protein, Oxygen Transport, Transport, Oxygen Storage
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. Ilari, P. Kjelgaard, C. Von Wachenfeldt, B. Catacchio, E. Chiancone, A. Boffi
Crystal Structure And Ligand Binding Properties Of The Truncated Hemoglobin From Geobacillus Stearothermophilus
Arch. Biochem. Biophys. V. 457 85 2007
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Hetero Components
(3, 6)
Info
All Hetero Components
1a: ACETATE ION (ACTa)
1b: ACETATE ION (ACTb)
2a: PROTOPORPHYRIN IX CONTAINING FE (HEMa)
2b: PROTOPORPHYRIN IX CONTAINING FE (HEMb)
3a: OXYGEN MOLECULE (OXYa)
3b: OXYGEN MOLECULE (OXYb)
View:
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Label:
No.
Name
Count
Type
Full Name
1
ACT
2
Ligand/Ion
ACETATE ION
2
HEM
2
Ligand/Ion
PROTOPORPHYRIN IX CONTAINING FE
3
OXY
2
Ligand/Ion
OXYGEN MOLECULE
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Sites
(6, 6)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
PHE A:25 , TYR A:26 , PHE A:39 , THR A:46 , GLN A:50 , TRP A:90 , OXY A:201 , HEM A:202
BINDING SITE FOR RESIDUE ACT L1133
2
AC2
SOFTWARE
PHE B:25 , TYR B:26 , PHE B:39 , THR B:46 , GLN B:50 , TRP B:90 , OXY B:201 , HEM B:202
BINDING SITE FOR RESIDUE ACT L1134
3
AC3
SOFTWARE
TYR A:26 , PHE A:39 , GLN A:50 , TRP A:90 , HEM A:202 , ACT A:203
BINDING SITE FOR RESIDUE OXY A1131
4
AC4
SOFTWARE
ILE A:38 , PHE A:39 , THR A:46 , LYS A:49 , GLN A:50 , PHE A:53 , TYR A:64 , HIS A:77 , PHE A:80 , ALA A:87 , TRP A:90 , LEU A:115 , OXY A:201 , HOH A:340 , HOH A:353 , HOH A:341 , ACT A:203
BINDING SITE FOR RESIDUE HEM A1132
5
AC5
SOFTWARE
TYR B:26 , PHE B:39 , GLN B:50 , TRP B:90 , HEM B:202 , ACT B:203
BINDING SITE FOR RESIDUE OXY B1131
6
AC6
SOFTWARE
ILE B:38 , PHE B:39 , THR B:46 , LYS B:49 , GLN B:50 , PHE B:53 , TYR B:64 , LEU B:73 , ARG B:76 , HIS B:77 , PHE B:80 , TRP B:90 , LEU B:115 , THR B:118 , OXY B:201 , HOH B:355 , HOH B:325 , ACT B:203
BINDING SITE FOR RESIDUE HEM B1132
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d2bkma_ (A:)
1b: SCOP_d2bkmb_ (B:)
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Protein Domains
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)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
Globin-like
(1351)
Superfamily
:
Globin-like
(1308)
Family
:
Truncated hemoglobin
(27)
Protein domain
:
automated matches
(5)
Geobacillus stearothermophilus [TaxId: 1422]
(1)
1a
d2bkma_
A:
1b
d2bkmb_
B:
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_2bkmA00 (A:3-130)
1b: CATH_2bkmB00 (B:3-130)
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Organisms
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)
(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Globin-like
(786)
Homologous Superfamily
:
Globins
(743)
Geobacillus stearothermophilus. Organism_taxid: 1422.
(1)
1a
2bkmA00
A:3-130
1b
2bkmB00
B:3-130
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Pfam Domains
(0, 0)
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Asym.Unit (57 KB)
Header - Asym.Unit
Biol.Unit 1 (27 KB)
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