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2BEO
Asym. Unit
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Asym.Unit (89 KB)
Biol.Unit 1 (83 KB)
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(1)
Title
:
PRFA, TRANSCRIPTIONAL REGULATOR IN LISTERIA MONOCYTOGENES
Authors
:
M. Eiting, G. Hagelueken, W. -D. Schubert, D. W. Heinz
Date
:
26 Nov 04 (Deposition) - 14 Apr 05 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.70
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Transcription, Bacterial Infection, Human Pathogen, Transcriptional Regulator, Activator, Virulence
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. Eiting, G. Hagelueken, W. -D. Schubert, D. W. Heinz
The Mutation G145S In Prfa, A Key Virulence Regulator Of Listeria Monocytogenes, Increases Dna-Binding Affinity By Stabilizing The Hth Motif
Mol. Microbiol. V. 56 433 2005
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Hetero Components
(4, 5)
Info
All Hetero Components
1a: ACETAMIDE (ACMa)
2a: CHLORIDE ION (CLa)
2b: CHLORIDE ION (CLb)
3a: GLUTAMINE (GLNa)
4a: TETRAETHYLENE GLYCOL (PG4a)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ACM
1
Ligand/Ion
ACETAMIDE
2
CL
2
Ligand/Ion
CHLORIDE ION
3
GLN
1
Mod. Amino Acid
GLUTAMINE
4
PG4
1
Ligand/Ion
TETRAETHYLENE GLYCOL
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Sites
(5, 5)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
GLN A:61 , TYR A:62 , TYR A:126
BINDING SITE FOR RESIDUE CL A1238
2
AC2
SOFTWARE
GLN B:61 , TYR B:62 , TYR B:126
BINDING SITE FOR RESIDUE CL B1238
3
AC3
SOFTWARE
GLN A:61 , TYR A:62 , LYS A:64 , ALA A:66 , PHE A:67 , GLN A:123 , TYR A:126 , PG4 A:1239
BINDING SITE FOR RESIDUE GLN A1240
4
AC4
SOFTWARE
TYR A:62 , TYR A:126 , GLN A:146 , LEU A:150 , GLN A:1240
BINDING SITE FOR RESIDUE PG4 A1239
5
AC5
SOFTWARE
GLN B:61 , TYR B:62 , GLN B:123 , TYR B:126
BINDING SITE FOR RESIDUE ACM B1239
[
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SAPs(SNPs)/Variants
(1, 2)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_PRFA_LISMO_001 (G145S, chain A/B, )
View:
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Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_PRFA_LISMO_001
*
G
145
S
PRFA_LISMO
---
---
A/B
G
145
S
* ID not provided by source
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(2, 4)
Info
All PROSITE Patterns/Profiles
1: HTH_CRP_2 (A:137-212,B:137-212)
2: HTH_CRP_1 (A:169-193,B:169-193)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
HTH_CRP_2
PS51063
Crp-type HTH domain profile.
PRFA_LISMO
137-212
2
A:137-212
B:137-212
2
HTH_CRP_1
PS00042
Crp-type HTH domain signature.
PRFA_LISMO
169-193
2
A:169-193
B:169-193
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Exons
(0, 0)
Info
All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 4)
Info
All SCOP Domains
1a: SCOP_d2beoa1 (A:138-237)
1b: SCOP_d2beob1 (B:138-237)
2a: SCOP_d2beoa2 (A:2-137)
2b: SCOP_d2beob2 (B:2-137)
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Protein Domains
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Class
:
All alpha proteins
(14657)
Fold
:
DNA/RNA-binding 3-helical bundle
(1299)
Superfamily
:
Winged helix DNA-binding domain
(576)
Family
:
CAP C-terminal domain-like
(39)
Protein domain
:
automated matches
(2)
Listeria monocytogenes [TaxId: 169963]
(2)
1a
d2beoa1
A:138-237
1b
d2beob1
B:138-237
Class
:
All beta proteins
(24004)
Fold
:
Double-stranded beta-helix
(580)
Superfamily
:
cAMP-binding domain-like
(99)
Family
:
Listeriolysin regulatory protein PrfA, N-terminal domain
(3)
Protein domain
:
automated matches
(2)
Listeria monocytogenes [TaxId: 169963]
(2)
2a
d2beoa2
A:2-137
2b
d2beob2
B:2-137
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CATH Domains
(2, 4)
Info
all CATH domains
1a: CATH_2beoA02 (A:137-237)
1b: CATH_2beoB02 (B:137-237)
2a: CATH_2beoA01 (A:2-109)
2b: CATH_2beoB01 (B:2-109)
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Organisms
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Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Arc Repressor Mutant, subunit A
(1030)
Homologous Superfamily
:
'winged helix' repressor DNA binding domain
(507)
Listeria monocytogenes. Organism_taxid: 169963. Strain: egd-e.
(2)
1a
2beoA02
A:137-237
1b
2beoB02
B:137-237
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Jelly Rolls
(1293)
Homologous Superfamily
:
Jelly Rolls
(177)
Listeria monocytogenes. Organism_taxid: 169963. Strain: egd-e.
(2)
2a
2beoA01
A:2-109
2b
2beoB01
B:2-109
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Pfam Domains
(0, 0)
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all PFAM domains
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Asymmetric Unit 1
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