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2BEC
Asym. Unit
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Asym.Unit (40 KB)
Biol.Unit 1 (36 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF CHP2 IN COMPLEX WITH ITS BINDING REGION IN NHE1 AND INSIGHTS INTO THE MECHANISM OF PH REGULATION
Authors
:
Y. Ben Ammar, S. Takeda, T. Hisamitsu, H. Mori, S. Wakabayashi
Date
:
24 Oct 05 (Deposition) - 27 Jun 06 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.70
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Calcineurin-Homologous Protein, Calcium-Binding Protein, Nhe1 Regulating Protein, Metal Binding Protein/Transport Protein Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Y. Ben Ammar, S. Takeda, T. Hisamitsu, H. Mori, S. Wakabayashi
Crystal Structure Of Chp2 Complexed With Nhe1-Cytosolic Region And An Implication For Ph Regulation
Embo J. V. 25 2315 2006
(for further references see the
PDB file header
)
[
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Hetero Components
(1, 2)
Info
All Hetero Components
1a: YTTRIUM (III) ION (YT3a)
1b: YTTRIUM (III) ION (YT3b)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
YT3
2
Ligand/Ion
YTTRIUM (III) ION
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Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASP A:165 , ASP A:167 , ASP A:169 , ALA A:171 , GLU A:176
BINDING SITE FOR RESIDUE YT3 A 1201
2
AC2
SOFTWARE
ASP A:95 , ASP A:124 , ASP A:126 , ASP A:128 , LYS A:130 , GLU A:135
BINDING SITE FOR RESIDUE YT3 A 1202
[
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SAPs(SNPs)/Variants
(1, 1)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_048664 (R127P, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_048664
R
127
P
CHP2_HUMAN
Polymorphism
35641939
A
R
127
P
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(2, 5)
Info
All PROSITE Patterns/Profiles
1: EF_HAND_2 (A:26-61|A:111-146|A:152-187)
2: EF_HAND_1 (A:124-136|A:165-177)
;
View:
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Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
EF_HAND_2
PS50222
EF-hand calcium-binding domain profile.
CHP2_HUMAN
26-61
111-146
152-187
3
A:26-61
A:111-146
A:152-187
2
EF_HAND_1
PS00018
EF-hand calcium-binding domain.
CHP2_HUMAN
124-136
165-177
2
A:124-136
A:165-177
[
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Exons
(9, 9)
Info
All Exons
Exon 1.8b (B:516-525)
Exon 1.9b (B:526-540)
Exon 2.1 (A:11-23)
Exon 2.2 (A:23-47)
Exon 2.3 (A:47-74)
Exon 2.4 (A:74-118 (gaps))
Exon 2.5 (A:118-138)
Exon 2.6 (A:139-179)
Exon 2.7 (A:180-196)
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All Exon Boundaries
01: Boundary 1.7a/1.8b
02: Boundary 1.8b/1.9b
03: Boundary 1.9b/1.10
04: Boundary -/2.1
05: Boundary 2.1/2.2
06: Boundary 2.2/2.3
07: Boundary 2.3/2.4
08: Boundary 2.4/2.5
09: Boundary 2.5/2.6
10: Boundary 2.6/2.7
11: Boundary 2.7/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.3a
ENST00000263980
3a
ENSE00001322091
chr1:
27481401-27480474
928
SL9A1_HUMAN
1-118
118
0
-
-
1.4b
ENST00000263980
4b
ENSE00000956128
chr1:
27440777-27440317
461
SL9A1_HUMAN
118-271
154
0
-
-
1.5
ENST00000263980
5
ENSE00000902176
chr1:
27436268-27436018
251
SL9A1_HUMAN
272-355
84
0
-
-
1.6
ENST00000263980
6
ENSE00000956129
chr1:
27434356-27434139
218
SL9A1_HUMAN
355-428
74
0
-
-
1.7a
ENST00000263980
7a
ENSE00000956130
chr1:
27432578-27432376
203
SL9A1_HUMAN
428-495
68
0
-
-
1.8b
ENST00000263980
8b
ENSE00000760795
chr1:
27429803-27429714
90
SL9A1_HUMAN
496-525
30
1
B:516-525
10
1.9b
ENST00000263980
9b
ENSE00000760796
chr1:
27429234-27429164
71
SL9A1_HUMAN
526-549
24
1
B:526-540
15
1.10
ENST00000263980
10
ENSE00001614589
chr1:
27429049-27428876
174
SL9A1_HUMAN
549-607
59
0
-
-
1.11
ENST00000263980
11
ENSE00000760801
chr1:
27428621-27428507
115
SL9A1_HUMAN
607-645
39
0
-
-
1.12
ENST00000263980
12
ENSE00000760804
chr1:
27428317-27428216
102
SL9A1_HUMAN
646-679
34
0
-
-
1.13
ENST00000263980
13
ENSE00000760806
chr1:
27427766-27427694
73
SL9A1_HUMAN
680-704
25
0
-
-
1.14b
ENST00000263980
14b
ENSE00001462442
chr1:
27427135-27425306
1830
SL9A1_HUMAN
704-815
112
0
-
-
2.1
ENST00000300113
1
ENSE00001175714
chr16:
23765948-23766437
490
CHP2_HUMAN
1-23
23
1
A:11-23
13
2.2
ENST00000300113
2
ENSE00001175706
chr16:
23766982-23767054
73
CHP2_HUMAN
23-47
25
1
A:23-47
25
2.3
ENST00000300113
3
ENSE00001175702
chr16:
23767168-23767248
81
CHP2_HUMAN
47-74
28
1
A:47-74
28
2.4
ENST00000300113
4
ENSE00001175699
chr16:
23767384-23767514
131
CHP2_HUMAN
74-118
45
1
A:74-118 (gaps)
45
2.5
ENST00000300113
5
ENSE00001175695
chr16:
23767709-23767770
62
CHP2_HUMAN
118-138
21
1
A:118-138
21
2.6
ENST00000300113
6
ENSE00001175689
chr16:
23768522-23768644
123
CHP2_HUMAN
139-179
41
1
A:139-179
41
2.7
ENST00000300113
7
ENSE00001290337
chr16:
23768851-23770272
1422
CHP2_HUMAN
180-196
17
1
A:180-196
17
[
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SCOP Domains
(0, 0)
Info
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CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_2becA00 (A:11-196)
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(
)
(
)
Organisms
(
)
(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Recoverin; domain 1
(474)
Homologous Superfamily
:
EF-hand
(412)
Human (Homo sapiens)
(106)
1a
2becA00
A:11-196
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Pfam Domains
(0, 0)
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Asymmetric Unit 1
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