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2BAS
Asym. Unit
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Asym.Unit (149 KB)
Biol.Unit 1 (140 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE BACILLUS SUBTILIS YKUI PROTEIN, WITH AN EAL DOMAIN.
Authors
:
G. Minasov, J. S. Brunzelle, L. Shuvalova, D. J. Miller, F. R. Collart, A. Joachimiak, W. F. Anderson, Midwest Center For Structural Gen (Mcsg)
Date
:
14 Oct 05 (Deposition) - 29 Nov 05 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.61
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Crystal Structure, Ykui Protein, Eal Domain, Structural Genomics, Psi, Protein Structure Initiative, Midwest Center For Structural Genomics, Mcsg, Signaling Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
G. Minasov, S. Padavattan, L. Shuvalova, J. S. Brunzelle, D. J. Miller A. Basle, C. Massa, F. R. Collart, T. Schirmer, W. F. Anderson
Crystal Structures Of Ykui And Its Complex With Second Messenger Cyclic Di-Gmp Suggest Catalytic Mechanism Of Phosphodiester Bond Cleavage By Eal Domains.
J. Biol. Chem. V. 284 13174 2009
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Hetero Components
(2, 20)
Info
All Hetero Components
1a: BETA-MERCAPTOETHANOL (BMEa)
2a: SELENOMETHIONINE (MSEa)
2b: SELENOMETHIONINE (MSEb)
2c: SELENOMETHIONINE (MSEc)
2d: SELENOMETHIONINE (MSEd)
2e: SELENOMETHIONINE (MSEe)
2f: SELENOMETHIONINE (MSEf)
2g: SELENOMETHIONINE (MSEg)
2h: SELENOMETHIONINE (MSEh)
2i: SELENOMETHIONINE (MSEi)
2j: SELENOMETHIONINE (MSEj)
2k: SELENOMETHIONINE (MSEk)
2l: SELENOMETHIONINE (MSEl)
2m: SELENOMETHIONINE (MSEm)
2n: SELENOMETHIONINE (MSEn)
2o: SELENOMETHIONINE (MSEo)
2p: SELENOMETHIONINE (MSEp)
2q: SELENOMETHIONINE (MSEq)
2r: SELENOMETHIONINE (MSEr)
2s: SELENOMETHIONINE (MSEs)
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No.
Name
Count
Type
Full Name
1
BME
1
Ligand/Ion
BETA-MERCAPTOETHANOL
2
MSE
19
Mod. Amino Acid
SELENOMETHIONINE
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Sites
(1, 1)
Info
All Sites
1: AC1 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
CYS A:308 , TYR A:399
BINDING SITE FOR RESIDUE BME A 501
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: EAL (B:1-250)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
EAL
PS50883
EAL domain profile.
YKUI_BACSU
1-250
1
B:1-250
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 4)
Info
All SCOP Domains
1a: SCOP_d2basa2 (A:263-407)
1b: SCOP_d2basb2 (B:263-400)
2a: SCOP_d2basa1 (A:2-262)
2b: SCOP_d2basb1 (B:0-262)
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Protein Domains
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(
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Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Profilin-like
(304)
Superfamily
:
Sensory domain-like
(15)
Family
:
YkuI C-terminal domain-like
(5)
Protein domain
:
Hypothetical protein YkuI, C-terminal domain
(2)
Bacillus subtilis [TaxId: 1423]
(2)
1a
d2basa2
A:263-407
1b
d2basb2
B:263-400
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
TIM beta/alpha-barrel
(3956)
Superfamily
:
EAL domain-like
(2)
Family
:
EAL domain
(2)
Protein domain
:
Hypothetical protein YkuI, N-terminal domain
(2)
Bacillus subtilis [TaxId: 1423]
(2)
2a
d2basa1
A:2-262
2b
d2basb1
B:0-262
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CATH Domains
(3, 6)
Info
all CATH domains
1a: CATH_2basA03 (A:292-407)
1b: CATH_2basB03 (B:292-400)
2a: CATH_2basB01 (B:0-229)
2b: CATH_2basA01 (A:2-229)
3a: CATH_2basA02 (A:246-291)
3b: CATH_2basB02 (B:246-291)
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Organisms
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Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Beta-Lactamase
(202)
Homologous Superfamily
:
[code=3.30.450.20, no name defined]
(117)
Bacillus subtilis. Organism_taxid: 1423.
(1)
1a
2basA03
A:292-407
1b
2basB03
B:292-400
Architecture
:
Alpha-Beta Barrel
(2994)
Topology
:
TIM Barrel
(2806)
Homologous Superfamily
:
EAL domain-like
(4)
Bacillus subtilis. Organism_taxid: 1423.
(1)
2a
2basB01
B:0-229
2b
2basA01
A:2-229
Class
:
Mainly Alpha
(13335)
Architecture
:
Up-down Bundle
(3216)
Topology
:
Single alpha-helices involved in coiled-coils or other helix-helix interfaces
(552)
Homologous Superfamily
:
[code=1.20.5.170, no name defined]
(60)
Bacillus subtilis. Organism_taxid: 1423.
(1)
3a
2basA02
A:246-291
3b
2basB02
B:246-291
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Pfam Domains
(0, 0)
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Asymmetric Unit 1
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