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2B76
Biol. Unit 1
Info
Asym.Unit (349 KB)
Biol.Unit 1 (170 KB)
Biol.Unit 2 (176 KB)
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(1)
Title
:
E. COLI QUINOL FUMARATE REDUCTASE FRDA E49Q MUTATION
Authors
:
E. Maklashina, T. M. Iverson, Y. Sher, V. Kotlyar, O. Mirza, J. Andrell, J. M. Hudson, F. A. Armstrong, G. Cecchini
Date
:
03 Oct 05 (Deposition) - 21 Feb 06 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.30
Chains
:
Asym. Unit : A,B,C,D,M,N,O,P
Biol. Unit 1: A,B,C,D (1x)
Biol. Unit 2: M,N,O,P (1x)
Keywords
:
Fumarate Reductase, Succinate Dehydrogenase, Electron Transfer, Respiration, Krebs Cycle, Membrane Protein, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
E. Maklashina, T. M. Iverson, Y. Sher, V. Kotlyar, J. Andrell, O. Mirza J. M. Hudson, F. A. Armstrong, R. A. Rothery, J. H. Weiner, G. Cecchini
Fumarate Reductase And Succinate Oxidase Activity Of Escherichia Coli Complex Ii Homologs Are Perturbed Differently By Mutation Of The Flavin Binding Domain
J. Biol. Chem. V. 281 11357 2006
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Hetero Components
(6, 6)
Info
All Hetero Components
1a: FE3-S4 CLUSTER (F3Sa)
1b: FE3-S4 CLUSTER (F3Sb)
2a: FLAVIN-ADENINE DINUCLEOTIDE (FADa)
2b: FLAVIN-ADENINE DINUCLEOTIDE (FADb)
3a: FE2/S2 (INORGANIC) CLUSTER (FESa)
3b: FE2/S2 (INORGANIC) CLUSTER (FESb)
4a: CITRATE ANION (FLCa)
4b: CITRATE ANION (FLCb)
5a: MENAQUINONE-7 (MQ7a)
5b: MENAQUINONE-7 (MQ7b)
6a: IRON/SULFUR CLUSTER (SF4a)
6b: IRON/SULFUR CLUSTER (SF4b)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
F3S
1
Ligand/Ion
FE3-S4 CLUSTER
2
FAD
1
Ligand/Ion
FLAVIN-ADENINE DINUCLEOTIDE
3
FES
1
Ligand/Ion
FE2/S2 (INORGANIC) CLUSTER
4
FLC
1
Ligand/Ion
CITRATE ANION
5
MQ7
1
Ligand/Ion
MENAQUINONE-7
6
SF4
1
Ligand/Ion
IRON/SULFUR CLUSTER
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Sites
(6, 6)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC3 (SOFTWARE)
3: AC4 (SOFTWARE)
4: AC5 (SOFTWARE)
5: AC6 (SOFTWARE)
6: AC7 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
GLN A:230 , HIS A:232 , THR A:244 , GLU A:245 , ARG A:287 , HIS A:355 , ARG A:390 , GLY A:392 , SER A:393 , FAD A:703
BINDING SITE FOR RESIDUE FLC A 702
2
AC3
SOFTWARE
SER B:56 , CYS B:57 , ARG B:58 , CYS B:62 , GLY B:63 , CYS B:65 , CYS B:77
BINDING SITE FOR RESIDUE FES B 244
3
AC4
SOFTWARE
CYS B:158 , GLN B:160 , CYS B:204 , THR B:205 , PHE B:206 , VAL B:207 , GLY B:208 , TYR B:209 , CYS B:210 , ALA B:221
BINDING SITE FOR RESIDUE F3S B 245
4
AC5
SOFTWARE
CYS B:148 , ILE B:149 , CYS B:151 , GLY B:152 , CYS B:154 , CYS B:214
BINDING SITE FOR RESIDUE SF4 B 246
5
AC6
SOFTWARE
GLY A:11 , ALA A:12 , GLY A:14 , ALA A:15 , SER A:36 , LYS A:37 , SER A:43 , HIS A:44 , THR A:45 , ALA A:47 , ALA A:48 , GLN A:49 , GLY A:50 , GLY A:51 , HIS A:155 , VAL A:157 , THR A:192 , GLY A:193 , THR A:203 , ASN A:204 , ASP A:211 , MET A:215 , LEU A:242 , TYR A:356 , GLY A:378 , GLU A:379 , SER A:393 , SER A:395 , LEU A:396 , LEU A:399 , FLC A:702
BINDING SITE FOR RESIDUE FAD A 703
6
AC7
SOFTWARE
GLY C:45 , TRP C:56 , ILE C:123 , ALA C:127 , VAL D:35 , LEU D:49 , PHE D:57 , LEU D:67
BINDING SITE FOR RESIDUE MQ7 D 700
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
View:
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Label:
Sorry, no Info available
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PROSITE Patterns/Profiles
(5, 17)
Info
All PROSITE Patterns/Profiles
1: 2FE2S_FER_2 (B:15-96)
2: FRD_SDH_FAD_BINDING (A:42-51)
3: 2FE2S_FER_1 (B:57-65)
4: 4FE4S_FER_2 (B:139-168)
5: 4FE4S_FER_1 (B:148-159)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
2FE2S_FER_2
PS51085
2Fe-2S ferredoxin-type iron-sulfur binding domain profile.
FRDB_ECO57
16-97
1
B:15-96
-
FRDB_ECOL6
16-97
1
B:15-96
-
FRDB_ECOLI
16-97
1
B:15-96
-
FRDB_SHIFL
16-97
1
B:15-96
-
2
FRD_SDH_FAD_BINDING
PS00504
Fumarate reductase / succinate dehydrogenase FAD-binding site.
FRDA_ECOLI
43-52
1
A:42-51
-
3
2FE2S_FER_1
PS00197
2Fe-2S ferredoxin-type iron-sulfur binding region signature.
FRDB_ECO57
58-66
1
B:57-65
-
FRDB_ECOL6
58-66
1
B:57-65
-
FRDB_ECOLI
58-66
1
B:57-65
-
FRDB_SHIFL
58-66
1
B:57-65
-
4
4FE4S_FER_2
PS51379
4Fe-4S ferredoxin-type iron-sulfur binding domain profile.
FRDB_ECO57
140-169
1
B:139-168
-
FRDB_ECOL6
140-169
1
B:139-168
-
FRDB_ECOLI
140-169
1
B:139-168
-
FRDB_SHIFL
140-169
1
B:139-168
-
5
4FE4S_FER_1
PS00198
4Fe-4S ferredoxin-type iron-sulfur binding region signature.
FRDB_ECO57
149-160
1
B:148-159
-
FRDB_ECOL6
149-160
1
B:148-159
-
FRDB_ECOLI
149-160
1
B:148-159
-
FRDB_SHIFL
149-160
1
B:148-159
-
[
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]
Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(7, 14)
Info
All SCOP Domains
1a: SCOP_d2b76b1 (B:106-243)
1b: SCOP_d2b76n1 (N:106-243)
2a: SCOP_d2b76a1 (A:443-576)
2b: SCOP_d2b76m1 (M:443-571)
3a: SCOP_d2b76b2 (B:1-105)
3b: SCOP_d2b76n2 (N:1-105)
4a: SCOP_d2b76a3 (A:226-357)
4b: SCOP_d2b76m3 (M:226-357)
5a: SCOP_d2b76a2 (A:0-225,A:358-442)
5b: SCOP_d2b76m2 (M:0-225,M:358-442)
6a: SCOP_d2b76c1 (C:1-130)
6b: SCOP_d2b76o1 (O:1-130)
7a: SCOP_d2b76d1 (D:0-118)
7b: SCOP_d2b76p1 (P:0-118)
View:
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Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
Globin-like
(1351)
Superfamily
:
alpha-helical ferredoxin
(43)
Family
:
Fumarate reductase/Succinate dehydogenase iron-sulfur protein, C-terminal domain
(35)
Protein domain
:
Fumarate reductase
(11)
Escherichia coli [TaxId: 562]
(6)
1a
d2b76b1
B:106-243
1b
d2b76n1
N:106-243
Fold
:
Spectrin repeat-like
(186)
Superfamily
:
Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain
(26)
Family
:
Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain
(26)
Protein domain
:
Fumarate reductase
(10)
Escherichia coli [TaxId: 562]
(5)
2a
d2b76a1
A:443-576
2b
d2b76m1
M:443-571
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
beta-Grasp (ubiquitin-like)
(1032)
Superfamily
:
2Fe-2S ferredoxin-like
(174)
Family
:
2Fe-2S ferredoxin domains from multidomain proteins
(82)
Protein domain
:
Fumarate reductase iron-sulfur protein, N-terminal domain
(11)
Escherichia coli [TaxId: 562]
(6)
3a
d2b76b2
B:1-105
3b
d2b76n2
N:1-105
Fold
:
Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain
(45)
Superfamily
:
Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain
(45)
Family
:
Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain
(45)
Protein domain
:
Fumarate reductase
(10)
Escherichia coli [TaxId: 562]
(5)
4a
d2b76a3
A:226-357
4b
d2b76m3
M:226-357
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
FAD/NAD(P)-binding domain
(331)
Superfamily
:
FAD/NAD(P)-binding domain
(331)
Family
:
Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
(45)
Protein domain
:
Fumarate reductase
(10)
Escherichia coli [TaxId: 562]
(5)
5a
d2b76a2
A:0-225,A:358-442
5b
d2b76m2
M:0-225,M:358-442
Class
:
Membrane and cell surface proteins and peptides
(2046)
Fold
:
Heme-binding four-helical bundle
(113)
Superfamily
:
Fumarate reductase respiratory complex transmembrane subunits
(55)
Family
:
Succinate dehydrogenase/Fumarate reductase transmembrane subunits (SdhC/FrdC and SdhD/FrdD)
(48)
Protein domain
:
Fumarate reductase subunit FrdC
(7)
Escherichia coli [TaxId: 562]
(5)
6a
d2b76c1
C:1-130
6b
d2b76o1
O:1-130
Protein domain
:
Fumarate reductase subunit FrdD
(7)
Escherichia coli [TaxId: 562]
(6)
7a
d2b76d1
D:0-118
7b
d2b76p1
P:0-118
[
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]
CATH Domains
(7, 16)
Info
all CATH domains
1a: CATH_2b76A01 (A:0-235,A:352-421)
1b: CATH_2b76M01 (M:0-235,M:352-421)
2a: CATH_2b76A02 (A:236-351)
2b: CATH_2b76M02 (M:236-351)
3a: CATH_2b76B01 (B:2-105)
3b: CATH_2b76N01 (N:2-105)
4a: CATH_2b76A04 (A:542-576)
4b: CATH_2b76M04 (M:542-571)
5a: CATH_2b76B02 (B:106-243)
5b: CATH_2b76N02 (N:106-243)
6a: CATH_2b76D00 (D:0-118)
6b: CATH_2b76C00 (C:1-130)
6c: CATH_2b76O00 (O:1-130)
6d: CATH_2b76P00 (P:0-118)
7a: CATH_2b76A03 (A:422-541)
7b: CATH_2b76M03 (M:422-541)
View:
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Classes
(
)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(bba) Sandwich
(528)
Topology
:
FAD/NAD(P)-binding domain
(373)
Homologous Superfamily
:
[code=3.50.50.60, no name defined]
(373)
Escherichia coli. Organism_taxid: 562.
(10)
1a
2b76A01
A:0-235,A:352-421
1b
2b76M01
M:0-235,M:352-421
Architecture
:
Alpha-Beta Complex
(3881)
Topology
:
Flavocytochrome C3; Chain A, domain 1
(40)
Homologous Superfamily
:
Flavocytochrome C3; Chain A, domain 1
(40)
Escherichia coli. Organism_taxid: 562.
(6)
2a
2b76A02
A:236-351
2b
2b76M02
M:236-351
Architecture
:
Roll
(3276)
Topology
:
Ubiquitin-like (UB roll)
(674)
Homologous Superfamily
:
[code=3.10.20.30, no name defined]
(153)
Escherichia coli. Organism_taxid: 562.
(14)
3a
2b76B01
B:2-105
3b
2b76N01
N:2-105
Class
:
Few Secondary Structures
(1120)
Architecture
:
Irregular
(1120)
Topology
:
Rhinovirus 14, subunit 4
(101)
Homologous Superfamily
:
succinate dehydrogenase protein domain
(23)
Escherichia coli. Organism_taxid: 562.
(5)
4a
2b76A04
A:542-576
4b
2b76M04
M:542-571
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Fumarate Reductase Iron-sulfur Protein; Chain B, domain 2
(33)
Homologous Superfamily
:
Fumarate Reductase Iron-sulfur Protein; Chain B, domain 2
(33)
Escherichia coli. Organism_taxid: 562.
(5)
5a
2b76B02
B:106-243
5b
2b76N02
N:106-243
Architecture
:
Up-down Bundle
(3216)
Topology
:
3 helical TM bundles of succinate and fumarate reductases
(23)
Homologous Superfamily
:
Fumarate reductase respiratory complex transmembrane subunits
(23)
Escherichia coli. Organism_taxid: 562.
(5)
6a
2b76D00
D:0-118
6b
2b76C00
C:1-130
6c
2b76O00
O:1-130
6d
2b76P00
P:0-118
Topology
:
Methane Monooxygenase Hydroxylase; Chain G, domain 1
(192)
Homologous Superfamily
:
[code=1.20.58.100, no name defined]
(37)
Escherichia coli. Organism_taxid: 562.
(8)
7a
2b76A03
A:422-541
7b
2b76M03
M:422-541
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Pfam Domains
(0, 0)
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Asym.Unit (349 KB)
Header - Asym.Unit
Biol.Unit 1 (170 KB)
Header - Biol.Unit 1
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