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2B6A
Asym. Unit
Info
Asym.Unit (167 KB)
Biol.Unit 1 (161 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF HIV-1 REVERSE TRANSCRIPTASE (RT) IN COMPLEX WITH THR-50
Authors
:
M. L. Morningstar, T. Roth, M. K. Smith, M. Zajac, K. Watson, R. W. Buckheit, K. Das, W. Zhang, E. Arnold, C. J. Michejda
Date
:
30 Sep 05 (Deposition) - 01 Nov 05 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.65
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Aids, Hiv, Drug Design, Reverse Transcriptase, Rt, Protein- Inhibitor Complex, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. L. Morningstar, T. Roth, M. K. Smith, M. Zajac, K. Watson, R. W. Buckheit, K. Das, W. Zhang, E. Arnold, C. J. Michejda
Crystal Structure Of Hiv-1 Reverse Transcriptase (Rt) In Complex With Thr-50
To Be Published
(for further references see the
PDB file header
)
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Hetero Components
(1, 1)
Info
All Hetero Components
1a: 1-(2,6-DIFLUOROBENZYL)-2-(2,6-DIFL... (T50a)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
T50
1
Ligand/Ion
1-(2,6-DIFLUOROBENZYL)-2-(2,6-DIFLUOROPHENYL)-4-METHYL-1H-BENZIMIDAZOLE
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Sites
(1, 1)
Info
All Sites
1: AC1 (SOFTWARE)
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
LEU A:100 , LYS A:101 , VAL A:106 , VAL A:179 , TYR A:181 , TYR A:188 , VAL A:189 , TRP A:229 , HIS A:235 , TYR A:318 , GLU B:138
BINDING SITE FOR RESIDUE T50 A 561
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SAPs(SNPs)/Variants
(5, 6)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_POL_HV1B1_003 (K172R, chain A/B, )
2: VAR_POL_HV1B1_004 (K451R, chain A, )
3: VAR_POL_HV1B1_005 (V458L, chain A, )
4: VAR_POL_HV1B1_006 (K512Q, chain A, )
5: VAR_POL_HV1B1_007 (E529Q, chain A, )
View:
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dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_POL_HV1B1_003
*
K
771
R
POL_HV1B1
---
---
A/B
K
172
R
2
UniProt
VAR_POL_HV1B1_004
*
K
1050
R
POL_HV1B1
---
---
A
K
451
R
3
UniProt
VAR_POL_HV1B1_005
*
V
1057
L
POL_HV1B1
---
---
A
V
458
L
4
UniProt
VAR_POL_HV1B1_006
*
K
1111
Q
POL_HV1B1
---
---
A
K
512
Q
5
UniProt
VAR_POL_HV1B1_007
*
E
1128
Q
POL_HV1B1
---
---
A
E
529
Q
* ID not provided by source
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(2, 3)
Info
All PROSITE Patterns/Profiles
1: RT_POL (A:44-234,B:44-234)
2: RNASE_H (A:434-557)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
RT_POL
PS50878
Reverse transcriptase (RT) catalytic domain profile.
POL_HV1B1
643-833
2
A:44-234
B:44-234
2
RNASE_H
PS50879
RNase H domain profile.
POL_HV1B1
1033-1156
1
A:434-557
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 3)
Info
All SCOP Domains
1a: SCOP_d2b6aa2 (A:430-558)
2a: SCOP_d2b6aa1 (A:1-429)
2b: SCOP_d2b6ab_ (B:)
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)
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)
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)
Protein Domains
(
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(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Ribonuclease H-like motif
(1424)
Superfamily
:
Ribonuclease H-like
(775)
Family
:
Ribonuclease H
(190)
Protein domain
:
HIV RNase H (Domain of reverse transcriptase)
(110)
Human immunodeficiency virus type 1 [TaxId: 11676]
(101)
1a
d2b6aa2
A:430-558
Class
:
Multi-domain proteins (alpha and beta)
(2421)
Fold
:
DNA/RNA polymerases
(850)
Superfamily
:
DNA/RNA polymerases
(850)
Family
:
Reverse transcriptase
(217)
Protein domain
:
HIV-1 reverse transcriptase
(161)
Human immunodeficiency virus type 1 [TaxId: 11676]
(138)
2a
d2b6aa1
A:1-429
2b
d2b6ab_
B:
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CATH Domains
(3, 9)
Info
all CATH domains
1a: CATH_2b6aB02 (B:99-123,B:165-233)
1b: CATH_2b6aA04 (A:320-426)
1c: CATH_2b6aB04 (B:320-426)
1d: CATH_2b6aA02 (A:91-115,A:157-225)
1e: CATH_2b6aA03 (A:226-319)
1f: CATH_2b6aB03 (B:234-319)
2a: CATH_2b6aA05 (A:427-558)
3a: CATH_2b6aA01 (A:1-90,A:116-156)
3b: CATH_2b6aB01 (B:9-98,B:124-164)
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)
(
)
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(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Alpha-Beta Plaits
(1688)
Homologous Superfamily
:
[code=3.30.70.270, no name defined]
(278)
Human immunodeficiency virus 1. Organism_taxid: 11676.
(27)
1a
2b6aB02
B:99-123,B:165-233
1b
2b6aA04
A:320-426
1c
2b6aB04
B:320-426
1d
2b6aA02
A:91-115,A:157-225
1e
2b6aA03
A:226-319
1f
2b6aB03
B:234-319
Topology
:
Nucleotidyltransferase; domain 5
(788)
Homologous Superfamily
:
[code=3.30.420.10, no name defined]
(372)
Human immunodeficiency virus 1. Organism_taxid: 11676.
(29)
2a
2b6aA05
A:427-558
Architecture
:
Roll
(3276)
Topology
:
HIV Type 1 Reverse Transcriptase; Chain A, domain 1
(164)
Homologous Superfamily
:
HIV Type 1 Reverse Transcriptase, subunit A, domain 1
(164)
Human immunodeficiency virus 1. Organism_taxid: 11676.
(27)
3a
2b6aA01
A:1-90,A:116-156
3b
2b6aB01
B:9-98,B:124-164
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Pfam Domains
(0, 0)
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Asymmetric Unit 1
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Asym.Unit (167 KB)
Header - Asym.Unit
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Header - Biol.Unit 1
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